Gcaud2353.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2353.t1
Unique NameGcaud2353.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length130
Homology
BLAST of Gcaud2353.t1 vs. uniprot
Match: A0A2V3J1E3_9FLOR (Nuclear transport factor 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1E3_9FLOR)

HSP 1 Score: 189 bits (480), Expect = 6.470e-60
Identity = 87/129 (67.44%), Postives = 111/129 (86.05%), Query Frame = 0
Query:    1 MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            M+ +++QIG AFV +YY+IFD+NRENLR LYK+ S+L+FEG+ C+G D I+NKLTSL L++V+H+I ++D Q T AVQPNGIL+SVSGNLVLDNEQNP+KFAQCF+LLP   +G +FWV NDIFRLNYG
Sbjct:    1 MADQMEQIGTAFVNYYYSIFDSNRENLRPLYKDQSVLTFEGQKCMGADEIMNKLTSLGLKQVKHKIITMDVQPTLAVQPNGILVSVSGNLVLDNEQNPVKFAQCFYLLP---EGSNFWVQNDIFRLNYG 126          
BLAST of Gcaud2353.t1 vs. uniprot
Match: M2Y8E2_GALSU (Nuclear transport factor, putative n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8E2_GALSU)

HSP 1 Score: 167 bits (423), Expect = 6.040e-51
Identity = 74/124 (59.68%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    6 DQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            +Q+G+AFVQHYYN FD++R NL  LY+E+S+L+FEGE  +G   I+ KL++LP QKV+HQI + DCQ T   QP+GIL+ V+GNL++D+ QNP+KF+QCF+LLP S +  S+WVHND+FRLNYG
Sbjct:   25 EQVGEAFVQHYYNTFDSSRSNLGPLYRENSMLTFEGEKYMGVQQIVGKLSALPFQKVQHQIVTCDCQPTQT-QPSGILVFVNGNLLVDDSQNPLKFSQCFYLLPDSTNAASYWVHNDMFRLNYG 147          
BLAST of Gcaud2353.t1 vs. uniprot
Match: R7QSP7_CHOCR (Nuclear transport factor 2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSP7_CHOCR)

HSP 1 Score: 166 bits (420), Expect = 9.800e-51
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 0
Query:    1 MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            M++    +G+AF + YY++FD+NR  L  LY+E S+LSFEG   +G   I+NKL  LP Q+V+H+I + DCQ T AVQPNGILISVSGNLV+D+  NPMKFAQCF LLP      +FWVHNDIFRLN G
Sbjct:    1 MTTSFQSVGEAFTKTYYSLFDSNRSQLLPLYREQSMLSFEGSQFMGAQAIVNKLVELPFQRVKHEIVTCDCQPTMAVQPNGILISVSGNLVIDDNVNPMKFAQCFHLLPDPASPNNFWVHNDIFRLNLG 129          
BLAST of Gcaud2353.t1 vs. uniprot
Match: A0A7S0ZAF8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAF8_9RHOD)

HSP 1 Score: 152 bits (383), Expect = 5.200e-45
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 0
Query:    8 IGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            +G++FV HYY  FDTNR NL  LY+++S+LSFEGE  +G   II KL SLP QKV HQI + DCQ   A QPNGIL+ VSGNLV+D+  NPMKF+Q F LL    +  S++VHND+FRLNYG
Sbjct:   15 VGESFVAHYYQNFDTNRANLAPLYRDNSMLSFEGEQFMGIQPIIQKLVSLPFQKVVHQIVTCDCQPVLASQPNGILVFVSGNLVVDDSPNPMKFSQTFNLLSDPSNPNSYFVHNDLFRLNYG 136          
BLAST of Gcaud2353.t1 vs. uniprot
Match: A0A7S3AB15_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AB15_9RHOD)

HSP 1 Score: 148 bits (373), Expect = 1.270e-43
Identity = 69/129 (53.49%), Postives = 93/129 (72.09%), Query Frame = 0
Query:    1 MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            M  +  QIG+AFV+HYY+ FDTNR  L SLY+ +S+LSFEGE  +G + I+ KL +L  Q+V+HQ+T+ D Q   A QPN IL+ VSG L++D+  NP+KF+Q F L+P  G    +WVHND+FRLNYG
Sbjct:    1 MGDQYQQIGEAFVKHYYSTFDTNRAGLVSLYQGNSMLSFEGETFMGAEAIVQKLANLSFQRVQHQVTTFDVQPVVAAQPNSILVFVSGQLLVDDSTNPIKFSQTFHLMPKEG---GYWVHNDMFRLNYG 126          
BLAST of Gcaud2353.t1 vs. uniprot
Match: A0A5J4YZW0_PORPP (Nuclear transport factor 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZW0_PORPP)

HSP 1 Score: 147 bits (371), Expect = 3.070e-43
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 0
Query:    4 EVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            +  Q+G+AFV HYY  FD+NR  L  LY+++S+L+FEGE  +GP  I+ KL  LP Q V HQ+ + DCQ     QPNGI++ VSGNLV+D+  N MKF+Q F LLP   +  SF+VHND+FRLNYG
Sbjct:    7 QFQQVGEAFVAHYYQNFDSNRGGLAPLYRDTSMLTFEGEQFMGPQAIVQKLQGLPFQTVVHQVVTCDCQPVIGSQPNGIVVFVSGNLVVDDSPNAMKFSQTFNLLPDPANPSSFFVHNDLFRLNYG 132          
BLAST of Gcaud2353.t1 vs. uniprot
Match: M1V7U4_CYAM1 (Similar to nuclear transport factor 2 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7U4_CYAM1)

HSP 1 Score: 140 bits (353), Expect = 1.620e-40
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 0
Query:    8 IGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            + +AFV HYY++FDT+R  L +LY+E S+L+FEG  C+G   I  KL SLP QKVRHQ+ + D Q       NG+L+ V+G+L +D+   P+KFAQ F LLP  G+   FWV+ND+FRLNYG
Sbjct:   10 LAEAFVNHYYSVFDTDRTQLAALYREVSMLTFEGNACMGASAITEKLVSLPFQKVRHQVVTCDAQPVLPESLNGVLVFVNGDLTVDDSNQPIKFAQVFHLLPDQGNPGMFWVYNDLFRLNYG 131          
BLAST of Gcaud2353.t1 vs. uniprot
Match: A0A200QRR3_9MAGN (Nuclear transport factor 2 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QRR3_9MAGN)

HSP 1 Score: 136 bits (343), Expect = 4.480e-39
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0
Query:    1 MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNYG 129
            M  E++ +G+AFV HYYN+FDTNR +L SLY+ +SILSFEG+  +G ++I  KL  LP  + +H IT++DCQ  P+  P GIL+ VSGNL L  E++ +KF+Q F L+P    G  F V NDIFRLNYG
Sbjct:    1 MEGEIESVGRAFVNHYYNLFDTNRSSLFSLYQPTSILSFEGQTIVGGEHIATKLIQLPFDQCQHFITTIDCQ--PSSFPGGILVFVSGNLQLSGEEHHLKFSQLFHLIPTQ-QGNIF-VANDIFRLNYG 125          
BLAST of Gcaud2353.t1 vs. uniprot
Match: UPI00053F3212 (nuclear transport factor 2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3212)

HSP 1 Score: 136 bits (343), Expect = 4.480e-39
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 0
Query:    6 DQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNG--ILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNY 128
            +Q+ KAFV HYY  FDTNR  L +L++E+S+LSFEG+  +G  NI+ KLTSLP ++ +H IT++DCQ +    PNG  +++ VSGNL L  EQ+P+KF+Q F+LLP      SF+V NDIFRLNY
Sbjct:    5 EQVAKAFVDHYYTTFDTNRAGLSNLHQENSMLSFEGQKFLGGQNIVGKLTSLPFEQCKHSITTIDCQLSG---PNGTTLIVFVSGNLQLAGEQHPLKFSQMFYLLPTPQG--SFYVQNDIFRLNY 124          
BLAST of Gcaud2353.t1 vs. uniprot
Match: A0A251SAD2_HELAN (Putative NTF2-like domain-containing protein n=2 Tax=Asteroideae TaxID=102804 RepID=A0A251SAD2_HELAN)

HSP 1 Score: 135 bits (341), Expect = 8.490e-39
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 0
Query:    6 DQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNIINKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMKFAQCFFLLPISGDGKSFWVHNDIFRLNY 128
            D + KAFV HYY+ FDTNR  L +LY+ESS+L+FEG+   G  NI+NKLTSLP  + +H IT++DCQ  P+    G+L+ VSGNL L  EQ+ +KF+Q F L+P      SF+V+NDIFRLNY
Sbjct:    4 DALSKAFVDHYYSTFDTNRSGLSTLYQESSMLTFEGQKTQGSQNIVNKLTSLPFDQCKHTITTVDCQ--PSGPSGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQG--SFYVYNDIFRLNY 122          
The following BLAST results are available for this feature:
BLAST of Gcaud2353.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1E3_9FLOR6.470e-6067.44Nuclear transport factor 2 n=1 Tax=Gracilariopsis ... [more]
M2Y8E2_GALSU6.040e-5159.68Nuclear transport factor, putative n=1 Tax=Galdier... [more]
R7QSP7_CHOCR9.800e-5158.91Nuclear transport factor 2 n=1 Tax=Chondrus crispu... [more]
A0A7S0ZAF8_9RHOD5.200e-4559.84Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S3AB15_9RHOD1.270e-4353.49Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YZW0_PORPP3.070e-4353.97Nuclear transport factor 2 n=1 Tax=Porphyridium pu... [more]
M1V7U4_CYAM11.620e-4051.64Similar to nuclear transport factor 2 n=1 Tax=Cyan... [more]
A0A200QRR3_9MAGN4.480e-3952.71Nuclear transport factor 2 n=1 Tax=Macleaya cordat... [more]
UPI00053F32124.480e-3953.60nuclear transport factor 2 n=1 Tax=Beta vulgaris s... [more]
A0A251SAD2_HELAN8.490e-3954.47Putative NTF2-like domain-containing protein n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.50coord: 1..129
e-value: 7.0E-39
score: 134.8
IPR002075Nuclear transport factor 2 domainPFAMPF02136NTF2coord: 8..126
e-value: 8.0E-31
score: 107.1
IPR045875Nuclear transport factor 2/Mtr2PANTHERPTHR12612NUCLEAR TRANSPORT FACTOR 2coord: 1..128
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 8..126
score: 32.570057
IPR018222Nuclear transport factor 2, eukaryoteCDDcd00780NTF2coord: 5..128
e-value: 4.03621E-43
score: 135.873
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 5..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:45052..45664 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2353.t1Gcaud2353.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 45052..45664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2353.t1 ID=Gcaud2353.t1|Name=Gcaud2353.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=130bp
MSSEVDQIGKAFVQHYYNIFDTNRENLRSLYKESSILSFEGEMCIGPDNI
INKLTSLPLQKVRHQITSLDCQYTPAVQPNGILISVSGNLVLDNEQNPMK
FAQCFFLLPISGDGKSFWVHNDIFRLNYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002075NTF2_dom
IPR045875NTF2/Mtr2
IPR018222Nuclear_transport_factor_2_euk
IPR032710NTF2-like_dom_sf