Gcaud2343.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2343.t1
Unique NameGcaud2343.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length234
Homology
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BLAST of Gcaud2343.t1 vs. uniprot
Match: A0A2V3J024_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J024_9FLOR)

HSP 1 Score: 248 bits (632), Expect = 3.130e-79
Identity = 133/236 (56.36%), Postives = 173/236 (73.31%), Query Frame = 0 
Query:    5 TTTLHRRHCAAQPVSSRSPSPLETPTTDPKSNS--TQVPKQKESKGGVVEQGPESGTESSPKVPDIPSTSWTSIGFEPEDANDPNKWKKFAWKYVGAVLLFFVSYKTLHWYVDRIEEEGKQRKKSLEESREFSNELKNDKNGSLGVSSMFQNAVE-----QNADFKRVMESVPESGLQTSSELDELYRYRDELDARLRELRKQGRTPEIDAEKKEVKLELKSLASEISILEKKKKS 233
            T  L  R+CAAQP  SR P   + P ++  S +  +  P+ +  K   +++  E+ TE + K+PDIPS SWTSIGFEP+D NDP+KWKKFAWKY GAVL+FF+SYKTLHWYVDRIEEEGKQ+KK +EE+REFS+E+K   +  LG S +   + E     Q+AD  +++++  E+ +QTSSELDELYRYR EL+ +LR+LRK+GRTPEIDAEKKEVKL+LK L  +I  LE KKKS
Sbjct:   36 TALLQSRYCAAQPAPSRPPRTNDNPQSESTSQAKLSPQPETRTDKDSSIDKPAETATEPAAKIPDIPSNSWTSIGFEPQDENDPHKWKKFAWKYAGAVLVFFISYKTLHWYVDRIEEEGKQQKKGMEEAREFSDEMKKQGSSPLGASILPDGSKELRRDEQHADLLKMLDTAKENEIQTSSELDELYRYRGELEEKLRDLRKRGRTPEIDAEKKEVKLDLKELTKDIHALEAKKKS 271
The following BLAST results are available for this feature:
BLAST of Gcaud2343.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J024_9FLOR3.130e-7956.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
NoneNo IPR availableCOILSCoilCoilcoord: 210..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:26454..27155 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2343.t1Gcaud2343.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 26454..27155 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2343.t1 ID=Gcaud2343.t1|Name=Gcaud2343.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=234bp
LEPSTTTLHRRHCAAQPVSSRSPSPLETPTTDPKSNSTQVPKQKESKGGV
VEQGPESGTESSPKVPDIPSTSWTSIGFEPEDANDPNKWKKFAWKYVGAV
LLFFVSYKTLHWYVDRIEEEGKQRKKSLEESREFSNELKNDKNGSLGVSS
MFQNAVEQNADFKRVMESVPESGLQTSSELDELYRYRDELDARLRELRKQ
GRTPEIDAEKKEVKLELKSLASEISILEKKKKS*
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