Gcaud2330.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2330.t1
Unique NameGcaud2330.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Homology
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A2V3J4H8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H8_9FLOR)

HSP 1 Score: 211 bits (536), Expect = 3.920e-67
Identity = 104/161 (64.60%), Postives = 126/161 (78.26%), Query Frame = 0
Query:    9 FFALAIALQTAQASFFCTGRGGPRLVTINPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLGSPVTTLVSTGSLALEGLLAEIELDVAVSKSFVRRLVC 169
            F AL     T QA++FC      R+  INPPTLFDP+PFGFS I VD KN VAH+AGQ AINQTG+I+G+TL EQL+E E N++FAL+ VE+ I+DI RVNAFI+N DP T  ++FM TG RLGSPVTTL+STG+LA+EGLL EIELD  VS+SFVRRL+C
Sbjct:    8 FLALIFCFHTTQATWFCLRTNNKRVRIINPPTLFDPVPFGFSHIAVDTKNFVAHVAGQVAINQTGAIIGDTLAEQLVETERNLLFALDAVEADISDITRVNAFILNFDPRTDLSTFMMTGKRLGSPVTTLISTGALAIEGLLVEIELDAVVSRSFVRRLIC 168          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A2V3IR41_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR41_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 5.540e-46
Identity = 92/174 (52.87%), Postives = 114/174 (65.52%), Query Frame = 0
Query:    1 MHFHLLLRFFALAIALQTAQASFFCTGRGGPRLVTINPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTS----AASFMETGMRLGSPVTTLVSTGSLALEGLLAEIELDVAVSKSFVRRLVCT 170
            MH   +    AL   LQ A A  +C  R   RLV INPPTL DP+PFG+SQI+VD +NAVAH+AGQ AINQTGS+VGET  EQL +   N+  ALE VE+ I DIL+     V+LDPST+    AAS M  G    +P   + S+ SL   G+L EI++DVAV +SFVRRLVC+
Sbjct:    1 MHIRSVFILLALLFVLQAADADAYCWRRQRRRLVRINPPTLLDPVPFGYSQIVVDTRNAVAHVAGQNAINQTGSLVGETFAEQLEQTLRNVELALEAVEADINDILKSILITVDLDPSTAEDILAASLMNAGGP--APPGIVFSSDSLLEPGVLVEIQVDVAVPESFVRRLVCS 172          
BLAST of Gcaud2330.t1 vs. uniprot
Match: UPI0019183523 (RidA family protein n=1 Tax=Psychrobacter fulvigenes TaxID=533323 RepID=UPI0019183523)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   35 TINPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGET-LPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLGS---PVTTLVSTGSLALEGLLAEIELDVAV 159
            TINP  ++D L FGFS     +   V H AGQ A ++ G+ VG+  L +Q  ++ NN+   L+   ++ AD++R+  +IV+L+P+         G   G    PV TL+   SLA+ GLL EIE+   V
Sbjct:    5 TINPSAMYDSLQFGFSHATKAQGKTVIHCAGQLAWDKDGNTVGKNDLAKQTEQVFNNLHTVLQESGATPADVVRMRTYIVDLEPANLEVVGKAIGKFYGEITPPVNTLIGVQSLAMPGLLIEIEMTAMV 133          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A7M3M6S7_9ACTN (Endoribonuclease L-PSP n=2 Tax=Streptomyces sp. SAJ15 TaxID=2011095 RepID=A0A7M3M6S7_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 6.850e-12
Identity = 41/124 (33.06%), Postives = 61/124 (49.19%), Query Frame = 0
Query:   33 LVTINPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLGS--PVTTLVSTGSLALEGLLAEIE 154
            L   NP  L DP+PFG+S ++  R + V HIAGQ   +  G +V E    Q+     ++  ALE V    + ++R+  +IV+ D     A         G   P  TL+   SLAL G+L E++
Sbjct:    3 LTITNPAALHDPVPFGYSHVVAARPSEVVHIAGQYGSDAQGGVVAEDFATQVETAFTHLGTALEAVGLDFSHVVRLGTYIVDHDTDKLEALVGPIRKIWGDRPPAQTLIGVASLALPGMLFEVD 126          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A5N8XK75_9ACTN (RidA family protein n=1 Tax=Streptomyces spongiae TaxID=565072 RepID=A0A5N8XK75_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 4.000e-10
Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:   36 INPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNL-DPSTSAASFMETGMRLGSP 134
            +NPP L  P   GFS  +V   + V  +AGQTA++  G +VG+TLPEQ      N++ ALE    + AD+ RV  +  ++ D  T AA       RL  P
Sbjct:    6 VNPPELSPPT--GFSHAVVATGSRVVFLAGQTALDTDGKVVGDTLPEQFERALTNLLTALEATGGTPADLARVTVYATDVSDYRTHAAELGLIWRRLAGP 103          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A0N1GQ03_9ACTN (Endoribonuclease L-PSP n=6 Tax=Actinomycetia TaxID=1760 RepID=A0A0N1GQ03_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.100e-9
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 0
Query:   36 INPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLGS 133
            +NPP L  PL  GFS  +V     +  +AGQTA++  G IVGE+LPEQ      N++ AL     + +D+ RV  ++      T  A++ +    LG+
Sbjct:    6 VNPPELSPPL--GFSHAVVAAGERIVFLAGQTALDADGKIVGESLPEQFTRALTNLLAALTAAGGTASDLARVTVYV------TDVAAYRDKASELGA 95          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A0Q9AVU7_9ACTN (Enamine deaminase RidA n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A0Q9AVU7_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.130e-9
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0
Query:   36 INPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLGS 133
            +NPP L  P   GFS  +V   + +  +AGQTA++  GS+VGE+LPEQ      N++ AL     + +D+ RV  ++      T  A++ E    LG+
Sbjct:    6 VNPPGLSPPT--GFSHAVVATGSRIVFLAGQTALDADGSVVGESLPEQFARALTNLLTALTAAGGTASDLARVTVYV------TDVAAYREHAAELGA 95          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A7H1B4F0_9ACTN (RidA family protein n=1 Tax=Streptomyces xanthii TaxID=2768069 RepID=A0A7H1B4F0_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 2.410e-9
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 0
Query:   31 PRLVTINPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLG 132
            P +  +NPPTL  P   GFS  +V     +  +AGQTA++  G IVG+TLP Q  +   N++ AL T   + AD+ RV  +      +T  A++      LG
Sbjct:    6 PHVDRVNPPTLSPPT--GFSHAVVATGTRLVLLAGQTALDTDGKIVGDTLPAQFTQALTNLLTALHTTGGTPADLARVTIY------TTDVAAYRTHARELG 99          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A1H4ZVM9_9ACTN (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=9 Tax=Streptomyces TaxID=1883 RepID=A0A1H4ZVM9_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 3.030e-9
Identity = 44/123 (35.77%), Postives = 61/123 (49.59%), Query Frame = 0
Query:   36 INPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDP-STSAASFMETGMRL-GSPVTTLVSTGSLALEGLLAEIELD 156
            INPP L  P   GFS  +V   + V  +AGQTA++  G +VGETLPEQ      N++ AL     + AD+ RV  +  ++    T AA       RL G     +   G++ L    A +ELD
Sbjct:    6 INPPELSPPT--GFSHAVVATGSRVVFLAGQTALDSDGKVVGETLPEQFERALTNLLTALAAAGGTPADLARVTVYATDVAAYRTHAAELGRIWSRLAGRNYPAMAVVGAVRLWDEEAMVELD 126          
BLAST of Gcaud2330.t1 vs. uniprot
Match: A0A1C2DJV4_9HYPH (Enamine deaminase RidA n=5 Tax=Mesorhizobium TaxID=68287 RepID=A0A1C2DJV4_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 3.100e-9
Identity = 40/127 (31.50%), Postives = 57/127 (44.88%), Query Frame = 0
Query:   36 INPPTLFDPLPFGFSQIIVDRKNAVAHIAGQTAINQTGSIVGE-TLPEQLMEIENNIMFALETVESSIADILRVNAFIVNLDPSTSAASFMETGMRLGSPV---TTLVSTGSLALEGLLAEIELDVA 158
            INP +++  LPFGFS  +        H+AGQ A N  G +VG   L  Q  +   N+   L  V +  AD++R+  ++VN  P        E     G       TL+   +LA+   L EIE   A
Sbjct:    6 INPDSMYQSLPFGFSHAVEQNSGRTLHLAGQVAWNSAGELVGPGDLATQARQALANLKAVLAEVGAMPADVVRLRTYVVNHTPDKLGPITAEIAAFFGDAAPAANTLIGVQTLAMPEFLIEIEATAA 132          
The following BLAST results are available for this feature:
BLAST of Gcaud2330.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4H8_9FLOR3.920e-6764.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IR41_9FLOR5.540e-4652.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
UPI00191835231.100e-1436.43RidA family protein n=1 Tax=Psychrobacter fulvigen... [more]
A0A7M3M6S7_9ACTN6.850e-1233.06Endoribonuclease L-PSP n=2 Tax=Streptomyces sp. SA... [more]
A0A5N8XK75_9ACTN4.000e-1038.00RidA family protein n=1 Tax=Streptomyces spongiae ... [more]
A0A0N1GQ03_9ACTN1.100e-934.69Endoribonuclease L-PSP n=6 Tax=Actinomycetia TaxID... [more]
A0A0Q9AVU7_9ACTN1.130e-934.69Enamine deaminase RidA n=2 Tax=unclassified Strept... [more]
A0A7H1B4F0_9ACTN2.410e-935.29RidA family protein n=1 Tax=Streptomyces xanthii T... [more]
A0A1H4ZVM9_9ACTN3.030e-935.77Enamine deaminase RidA, house cleaning of reactive... [more]
A0A1C2DJV4_9HYPH3.100e-931.50Enamine deaminase RidA n=5 Tax=Mesorhizobium TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 49..158
e-value: 7.3E-12
score: 45.3
IPR006175YjgF/YER057c/UK114 familyPANTHERPTHR118032-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDAcoord: 36..155
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 33..161
e-value: 3.7E-12
score: 48.3
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 34..160
NoneNo IPR availablePANTHERPTHR11803:SF34BLL5130 PROTEINcoord: 36..155
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 49..154
e-value: 4.42106E-8
score: 46.7827

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1080_length_14143_cov_5.034515contigNODE_1080_length_14143_cov_5.034515:7063..7575 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2330.t1Gcaud2330.t1Gracilaria caudata M_176_S67 malemRNANODE_1080_length_14143_cov_5.034515 7063..7575 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2330.t1 ID=Gcaud2330.t1|Name=Gcaud2330.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MHFHLLLRFFALAIALQTAQASFFCTGRGGPRLVTINPPTLFDPLPFGFS
QIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVES
SIADILRVNAFIVNLDPSTSAASFMETGMRLGSPVTTLVSTGSLALEGLL
AEIELDVAVSKSFVRRLVCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006175YjgF/YER057c/UK114
IPR035959RutC-like_sf