Gcaud2328.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2328.t1
Unique NameGcaud2328.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length211
Homology
BLAST of Gcaud2328.t1 vs. uniprot
Match: A0A2V3J5L8_9FLOR (Ras-related protein Rab-2A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5L8_9FLOR)

HSP 1 Score: 403 bits (1035), Expect = 7.680e-142
Identity = 201/210 (95.71%), Postives = 205/210 (97.62%), Query Frame = 0
Query:    1 MSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTISLLDDATTETKSGCC 210
            MSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTI+LVGNKADLEHRREV  ESGEAFA+EHGLLFLETSAKNNTNVE+AFLTTA KIYEKVKAGDLDLS+ERHGVKVGASSN ISLLDDATTETKS CC
Sbjct:    1 MSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIILVGNKADLEHRREVSTESGEAFAREHGLLFLETSAKNNTNVEQAFLTTAAKIYEKVKAGDLDLSTERHGVKVGASSNAISLLDDATTETKSACC 210          
BLAST of Gcaud2328.t1 vs. uniprot
Match: A0A5J4Z8C3_PORPP (Ras-related protein Rab-2A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8C3_PORPP)

HSP 1 Score: 339 bits (870), Expect = 5.510e-115
Identity = 167/211 (79.15%), Postives = 190/211 (90.05%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTISLLDDATTET---KSGCC 210
            SYAYLFKYIIIGDTGVGKSCLLLQFTD+RFTPIHDLTIGVEFGARIVT+ED QLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRK+TF H+ SWL+DA+ HS S+MTI+LVGNKADLEHRREVP+E+GEAFAK+HGLLF+ETSAK+N NV+EAF+ TA  IYEKVK G LDL+SE+HGVK+G ++N +SL D+  T +   KS CC
Sbjct:   56 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFTPIHDLTIGVEFGARIVTIEDTQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKDTFAHLESWLEDARQHSHSNMTIILVGNKADLEHRREVPRENGEAFAKQHGLLFIETSAKDNINVDEAFMQTAGMIYEKVKEGTLDLNSEQHGVKLGGTAN-VSLFDEKATASDASKSSCC 265          
BLAST of Gcaud2328.t1 vs. uniprot
Match: A0A7S0ZE95_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE95_9RHOD)

HSP 1 Score: 330 bits (845), Expect = 2.990e-113
Identity = 158/185 (85.41%), Postives = 175/185 (94.59%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVK 187
            SYAYLFKYIIIGDTG GKSCLLLQFTD+RFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETF H+LSWL+DA+ HS S+MTI+LVGNK+DL+HRREVP+E GEAFAKEHGLLF+ETSAK+N NV++AF+ TA+ IYEKVK G LDL+SE+HGVK
Sbjct:    2 SYAYLFKYIIIGDTGAGKSCLLLQFTDKRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFAHLLSWLEDARQHSHSNMTIILVGNKSDLDHRREVPREQGEAFAKEHGLLFIETSAKDNINVDDAFMQTASAIYEKVKEGTLDLNSEQHGVK 186          
BLAST of Gcaud2328.t1 vs. uniprot
Match: A0A830HTH3_9CHLO (Rab-2A protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HTH3_9CHLO)

HSP 1 Score: 311 bits (796), Expect = 2.150e-105
Identity = 148/211 (70.14%), Postives = 178/211 (84.36%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTI---SLLDDATTETKSGCC 210
            SYAYLFKYIIIGDTGVGKSCLLLQFTD+RF P+HDLTIGVEFGAR+VT++ KQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR+ETF H+ SWL+DAK H++++MTI+L+GNK+DL HRR+V  E GEAFAKEHGL+F+ETSAK   NVE+AF+ TA KI+EK+++G  D+S+E +G+KVG    T+        A T  KS CC
Sbjct:    2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFHHLASWLEDAKQHANANMTIMLIGNKSDLTHRRQVSTEEGEAFAKEHGLVFMETSAKTAHNVEDAFINTARKIHEKIESGIFDVSNESYGIKVGLGGGTVRPGEAQASAATPAKSNCC 212          
BLAST of Gcaud2328.t1 vs. uniprot
Match: A0A7S3FHX7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FHX7_9VIRI)

HSP 1 Score: 307 bits (787), Expect = 5.410e-104
Identity = 148/212 (69.81%), Postives = 178/212 (83.96%), Query Frame = 0
Query:    4 YAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVG-----ASSNTISLLDDATTETKSGCC 210
            YAYLFKYIIIGDTGVGKSCLLLQFTD+RF P+HDLTIGVEFGA++VT++ K +KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR+ETF+H+ SWL+DA+ H++S+MTI+L+GNKADL HRR+V  E GE FAKE+GL+F+ETSAK   NVEEAF+ TATKIYEK++ G  D+S+E +G+KVG     A   TI+   D    +KS CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAKMVTIDSKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNMTIMLIGNKADLNHRRQVSTEEGEQFAKENGLIFMETSAKTAANVEEAFVGTATKIYEKIQEGVFDVSNESYGIKVGYGAGGAGGGTINPGRDQAPSSKSSCC 214          
BLAST of Gcaud2328.t1 vs. uniprot
Match: M2WUX3_GALSU (Rab family, other n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WUX3_GALSU)

HSP 1 Score: 306 bits (783), Expect = 1.790e-103
Identity = 150/208 (72.12%), Postives = 175/208 (84.13%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTISLLDDATTETKSGCC 210
            SYAYLFK+IIIGD+GVGKSCLLLQFTD+RF PIHDLTIGVEFGA+IV ++ K +KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR+ETF+H+ +WL+DA+ +SS DMT+VLVGNK DLEHRR+V KE GEAFA+ HGL FLETSAK   +VEE F   A  IYEK+K G LDL+ +  GVKVGA++NTI L  +   E +SGCC
Sbjct:    2 SYAYLFKFIIIGDSGVGKSCLLLQFTDKRFQPIHDLTIGVEFGAKIVQMDGKTIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQYSSPDMTVVLVGNKCDLEHRRQVSKEEGEAFARAHGLSFLETSAKTAFHVEETFTEAARTIYEKIKQGKLDLNGDFQGVKVGATANTIQLQQNNQDE-RSGCC 208          
BLAST of Gcaud2328.t1 vs. uniprot
Match: A0A1Y1XI96_9FUNG (Ras-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XI96_9FUNG)

HSP 1 Score: 305 bits (782), Expect = 2.720e-103
Identity = 141/193 (73.06%), Postives = 172/193 (89.12%), Query Frame = 0
Query:    1 MSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSN 193
            M+SYAYLFKYIIIGDTGVGKSCLLLQFTD+RF P HDLTIGVEFGAR +TV++K +KLQ+WDTAGQESFRSITRSYYRGAAGALLVYDITR+ETF+H+  WL+DA+ HS+ ++TI+L+GNK+DLE +R V KE GEAFAKEHGL FLETSAK + NVEEAF+ TA +IYEK+++G L++ +E HG+KVG S++
Sbjct:    1 MTSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPAHDLTIGVEFGARFITVDNKSIKLQVWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFEHLAKWLEDAREHSNDNITILLIGNKSDLEGKRAVSKEEGEAFAKEHGLFFLETSAKTSANVEEAFINTAERIYEKIQSGVLNVKNESHGIKVGVSNS 193          
BLAST of Gcaud2328.t1 vs. uniprot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A n=64 Tax=Amniota TaxID=32524 RepID=RAB2A_HUMAN)

HSP 1 Score: 305 bits (780), Expect = 5.880e-103
Identity = 142/211 (67.30%), Postives = 180/211 (85.31%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVG---ASSNTISLLDDATTETKSGCC 210
            +YAYLFKYIIIGDTGVGKSCLLLQFTD+RF P+HDLTIGVEFGAR++T++ KQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR++TF+H+ +WL+DA+ HS+S+M I+L+GNK+DLE RREV KE GEAFA+EHGL+F+ETSAK  +NVEEAF+ TA +IYEK++ G  D+++E +G+K+G   A++N     +    +   GCC
Sbjct:    2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of Gcaud2328.t1 vs. uniprot
Match: UPI0003316FCC (ras-related protein Rab-2B isoform X1 n=2 Tax=Sorex araneus TaxID=42254 RepID=UPI0003316FCC)

HSP 1 Score: 305 bits (780), Expect = 6.750e-103
Identity = 143/206 (69.42%), Postives = 177/206 (85.92%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTISLLDDATTETKSG 208
            +YAYLFKYIIIGDTGVGKSCLLLQFTD+RF P+HDLTIGVEFGAR+VT++ KQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR+ETF+H+ SWL+DA+ HSSS+M I+L+GNK+DLE RR+V KE GEAFA+EHGL+F+ETSAK   NVEEAF+ TA +IY K++ G  D+S+E +G+K+G   +  + +  +T +  SG
Sbjct:    2 TYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKKEEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVSNEANGIKIGPQQSISTPVGPSTPQRNSG 207          
BLAST of Gcaud2328.t1 vs. uniprot
Match: R1DKC2_EMIHU (Rab2, rab family GTPase n=2 Tax=Eukaryota TaxID=2759 RepID=R1DKC2_EMIHU)

HSP 1 Score: 304 bits (779), Expect = 7.270e-103
Identity = 146/208 (70.19%), Postives = 179/208 (86.06%), Query Frame = 0
Query:    3 SYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILSWLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTISLLDDATTETKSGCC 210
            SYAYLFKYIIIGDTGVGKSCLLLQFTD+RF  +HDLTIGVEFGAR+VT++ KQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR+ETF+H+ SWL DA+ HS+S+MTI+L+GNK+D+EHRR V  E GEAFA+EHGL+FLETSAK   NVE+AF++TA +IYEK++ G  D+++E  G+KVG ++   +L   A  ++ SGCC
Sbjct:    2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQQVHDLTIGVEFGARMVTLDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLDDARTHSNSNMTIMLIGNKSDMEHRRAVTAEEGEAFAQEHGLIFLETSAKTAANVEDAFISTAKRIYEKIQQGVFDVTNESFGIKVGMAAAGPNLYAPAPKQS-SGCC 208          
The following BLAST results are available for this feature:
BLAST of Gcaud2328.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5L8_9FLOR7.680e-14295.71Ras-related protein Rab-2A n=1 Tax=Gracilariopsis ... [more]
A0A5J4Z8C3_PORPP5.510e-11579.15Ras-related protein Rab-2A n=1 Tax=Porphyridium pu... [more]
A0A7S0ZE95_9RHOD2.990e-11385.41Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A830HTH3_9CHLO2.150e-10570.14Rab-2A protein n=1 Tax=Pycnococcus provasolii TaxI... [more]
A0A7S3FHX7_9VIRI5.410e-10469.81Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
M2WUX3_GALSU1.790e-10372.12Rab family, other n=1 Tax=Galdieria sulphuraria Ta... [more]
A0A1Y1XI96_9FUNG2.720e-10373.06Ras-domain-containing protein n=1 Tax=Basidiobolus... [more]
RAB2A_HUMAN5.880e-10367.30Ras-related protein Rab-2A n=64 Tax=Amniota TaxID=... [more]
UPI0003316FCC6.750e-10369.42ras-related protein Rab-2B isoform X1 n=2 Tax=Sore... [more]
R1DKC2_EMIHU7.270e-10370.19Rab2, rab family GTPase n=2 Tax=Eukaryota TaxID=27... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 8..29
score: 51.86
coord: 146..168
score: 46.73
coord: 111..124
score: 51.52
coord: 49..71
score: 50.95
coord: 31..47
score: 32.83
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 13..205
e-value: 2.5E-7
score: 40.3
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 8..171
e-value: 5.0E-103
score: 358.2
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 5..171
e-value: 1.5E-35
score: 134.1
NoneNo IPR availablePANTHERPTHR47979:SF12RAS-RELATED PROTEIN RAB-2Acoord: 3..196
NoneNo IPR availablePANTHERPTHR47979DRAB11-RELATEDcoord: 3..196
NoneNo IPR availablePROSITEPS51420RHOcoord: 1..169
score: 8.912954
NoneNo IPR availablePROSITEPS51419RABcoord: 3..210
score: 35.756485
NoneNo IPR availableCDDcd01866Rab2coord: 4..171
e-value: 3.3726E-115
score: 323.605
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 10..172
e-value: 1.9E-10
score: 14.7
IPR001806Small GTPasePFAMPF00071Rascoord: 9..169
e-value: 2.8E-60
score: 202.6
IPR001806Small GTPasePROSITEPS51421RAScoord: 2..198
score: 19.767303
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 8..162
e-value: 3.2E-29
score: 99.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..193
e-value: 7.7E-70
score: 236.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1080_length_14143_cov_5.034515contigNODE_1080_length_14143_cov_5.034515:3384..4162 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2328.t1Gcaud2328.t1Gracilaria caudata M_176_S67 malemRNANODE_1080_length_14143_cov_5.034515 3384..4162 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2328.t1 ID=Gcaud2328.t1|Name=Gcaud2328.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=211bp
MSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVT
VEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILS
WLQDAKAHSSSDMTIVLVGNKADLEHRREVPKESGEAFAKEHGLLFLETS
AKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNTISLLDD
ATTETKSGCC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase