Gcaud2308.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2308.t1
Unique NameGcaud2308.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length420
Homology
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A2V3ITA6_9FLOR (General transcription factor IIH subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITA6_9FLOR)

HSP 1 Score: 724 bits (1870), Expect = 5.500e-262
Identity = 335/418 (80.14%), Postives = 385/418 (92.11%), Query Frame = 0
Query:    1 MLVDVDKDDEDIKRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGCKTMLRKEKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGCGNQTIRNQS 418
            MLVDVDKD+E+ +RIREGYAWESSKIRSWEQIEEDPETGRLKSYQI+ Q A++KIRDDGPSGVRRG+IRFCV+++DMSQSLR+TDLKPSRADLV+DS+Q F++EFFDQNPISQLSV+ TRDG+ALRLS FSSNEKHHIEA+QKASR+GPGGN SLQN+LTV+ +NLASVPPYGMKEII++YGSLSTCDPGDIH+TI++LVSEKIRCSAIGLGAEL+ILR LTK+  GTYVIARNEEHFR+SW+ HV+PPPT NRQVSASLIRMGFPMLERLEQP LYCNNPNLKGRFGYHCPRCSAW SE+PSECALCGLTLVSSPHLARSYHHLFPVP+F+ + ++  + L+ +G   D H +R+TELL+ +S RCTGCKT++RK+ AL LLCPKCLNVFCI+CDSFIHDSLHHCPGCGNQ + N S
Sbjct:    9 MLVDVDKDEEETRRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIEDQIARRKIRDDGPSGVRRGVIRFCVVVIDMSQSLRATDLKPSRADLVVDSIQCFVREFFDQNPISQLSVVTTRDGQALRLSNFSSNEKHHIEAIQKASRLGPGGNPSLQNALTVSNSNLASVPPYGMKEIIVSYGSLSTCDPGDIHKTIDTLVSEKIRCSAIGLGAELHILRVLTKRTNGTYVIARNEEHFRESWSSHVVPPPTTNRQVSASLIRMGFPMLERLEQPALYCNNPNLKGRFGYHCPRCSAWTSELPSECALCGLTLVSSPHLARSYHHLFPVPKFIALKDQSLEDLRLSGLEADKHEQRITELLSVESARCTGCKTLMRKDNALHLLCPKCLNVFCIECDSFIHDSLHHCPGCGNQGVLNHS 426          
BLAST of Gcaud2308.t1 vs. uniprot
Match: R7Q7Q8_CHOCR (General transcription factor IIH subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q8_CHOCR)

HSP 1 Score: 585 bits (1507), Expect = 8.220e-207
Identity = 268/400 (67.00%), Postives = 334/400 (83.50%), Query Frame = 0
Query:   11 DIKRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGCKTMLRKEKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGCG 410
            ++KR +E YAWESS +RSW+QIEEDPETG+LKS+  + Q A+K+ RDDG +GVRRGIIRFCV+I+DMS+ +R+TDLKPSRADL  +SV SF KE+FDQNPISQLSV+MTRD +A++LS+FSSNEKHHIEA++KA R+GP G ASLQN+L +A  NL++VPPY MKE+I+ YGSLSTCDPGDIH TI  L S K+RCSA+GLGAEL+ILR LTK   GTY IA NEEHFRDS   HVIPPPT  +QVSASLIRMG+P+L+R+++PTLYCNNP+++GR GY+CPRCS W+SE+P EC LCGLTLVSSPHLARSYHHLFPVP+F++++  + D L+     ++A   +  +LL  D +RCTGC  +L KE +LRLLCP C+ VFC+DCD+F+HDSLHHCPGCG
Sbjct:   22 ELKRAKEAYAWESSNVRSWDQIEEDPETGKLKSFVREKQIARKRSRDDGFTGVRRGIIRFCVLIIDMSEHVRATDLKPSRADLFCESVSSFAKEYFDQNPISQLSVVMTRDYEAIKLSSFSSNEKHHIEAMRKALRLGPSGAASLQNALKIANKNLSTVPPYAMKEVIVCYGSLSTCDPGDIHATINLLASSKVRCSAVGLGAELHILRVLTKSTNGTYSIAMNEEHFRDSLGSHVIPPPTTTKQVSASLIRMGYPILQRIDEPTLYCNNPSVRGRLGYNCPRCSGWLSEMPCECTLCGLTLVSSPHLARSYHHLFPVPKFISLETSDLD-LRLQSKEDEAKFAKAMKLLPIDVLRCTGCAKLLEKEASLRLLCPSCVKVFCVDCDAFVHDSLHHCPGCG 420          
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A7S3EFP8_9RHOD (General transcription factor IIH subunit n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EFP8_9RHOD)

HSP 1 Score: 342 bits (878), Expect = 1.130e-111
Identity = 185/422 (43.84%), Postives = 255/422 (60.43%), Query Frame = 0
Query:    3 VDVDKDDEDIKRIRE-----GYAWESSKIRSWEQIEEDPETGRLKSYQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHI-EAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCN-NPNLKG-----RFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGC-KTMLRKEKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGCGN 411
            +D+DKDDE  +  +E     GYAWES   RSWE+I+ED E+GR+++   D    +++ R     G++RGI+R+ V+ +D S+S+  +D+KPSR   V+   + F++EFF+QNPI+ L+++ T  G A +++   S+ +    E    A +    G ASLQN L ++K  L  VPPYG KE+I+ + SLST DPGDI  T  SL    IRCS +GL AE+YILR + KK GG Y +A NEEHF +    HV PPP  +  + ASL+ MGFP L+ L+    Y + N N KG     + GY CPRC +W+S++P EC LCGLTL++SPHLARSYHHLFP+P F                      + VT    + + RC GC K  L  +   +  C  C NVFC +CD FIHDSLH+CPGC +
Sbjct:    6 LDIDKDDEFTREEQEAKKKKGYAWESQD-RSWERIQED-ESGRIRAVGADDPATRRQRRQALIPGIKRGIVRYAVLAIDASESMNDSDMKPSRGIAVLTICEQFVQEFFEQNPIAHLAIVATFRGSATQVAAIGSSPQALCSELSTMAEKASFRGEASLQNLLELSKAILDPVPPYGSKEVIMVFSSLSTTDPGDIKATTNSLKENGIRCSIVGLAAEVYILRQVCKKTGGEYHVATNEEHFHELVNAHVPPPPLASDTLKASLVEMGFPKLKVLKSSKQYFDANVNPKGGRSSGKIGYECPRCKSWLSDVPVECVLCGLTLITSPHLARSYHHLFPIPAF----------------------KEVTATDTSGAARCKGCCKRFLSGDSKAQ--CTSCKNVFCEECDIFIHDSLHNCPGCNS 401          
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A1X6P7L4_PORUM (VWFA domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7L4_PORUM)

HSP 1 Score: 339 bits (870), Expect = 1.350e-111
Identity = 165/323 (51.08%), Postives = 222/323 (68.73%), Query Frame = 0
Query:    6 DKDDEDIKRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGR-FGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFP 327
            D DD  ++    GYAWE+   RSWEQI+EDP TGRLKS     QRA+K+ RDDG  GVRRG+IR+ V++VD+S ++ +TD  PSR + V  +  +FI+ FFD+NPISQL+++  RDG A  LST +S+ + H +A+  A   G  G+ASL+N + +A   LA +P YG +E+++ +G L+TCDPGD+   ++ L ++ +R S +G+ AE+YIL  L+K+ GG Y +A  E HF +   GHV PPPTV   V  +LIRMGFP+L  L  P   C + NL  R  GY CPRC AWI+ +P+EC LCGLTLVSSPHLARSYHHLFP
Sbjct:    3 DDDDAPVEAASRGYAWEARFERSWEQIQEDPRTGRLKSLAAVTQRARKRRRDDGVRGVRRGMIRYAVLVVDLSAAMAATDWSPSRGEAVASAADTFIRAFFDENPISQLALVALRDGVAELLSTLNSSPRSHCDALATAVAGGCYGDASLENGVRLAAAVLAPIPAYGTREVLVLFGGLATCDPGDVRAAMDGLAADGMRASVVGIDAEVYILSLLSKRTGGMYAVATGEAHFGELLAGHVTPPPTVGDGVPPTLIRMGFPLLRALPAPRP-CFDDNLAARRVGYVCPRCEAWIAHVPAECVLCGLTLVSSPHLARSYHHLFP 324          
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A5J4YXZ9_PORPP (General transcription factor IIH subunit n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXZ9_PORPP)

HSP 1 Score: 340 bits (873), Expect = 4.650e-111
Identity = 177/405 (43.70%), Postives = 255/405 (62.96%), Query Frame = 0
Query:   19 YAWESSKIRSWEQIEEDPETGRLKS-----YQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGL-GAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERL--EQPTLYCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGC-KTMLRKEKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGCGNQTI 414
            YAWE++  RSW++I+EDP+TGRL +      Q+  +R +  +R+     VRRG++RF V+ +D S+S+  TD++PSRA++V+ + Q F++EF+DQNPISQL +I TR+G A  LS   SN   HI+A+  +  +G  G ASLQN L      L ++P Y  +EI++ +GS++TCDPGD+H TI  L  +KI  S + + GAE+Y+L+  + + GG + +  NEEH        + PP      ++ SLIRMGFP+L  +  + P   C N  ++ R GY CPRCSAW+S++P EC LCGLTL+SSPHLARSYHHLFPVPRF         T +S     +A  +R           C+ C +++    +++   CP+C   FCI+CDSFIH+SLH+CPGC N  I
Sbjct:    6 YAWEANFERSWDKIQEDPQTGRLSASEGIAQQLARKRRRDSLRETLRGKVRRGMMRFMVLALDFSRSMNLTDMRPSRAEVVVGAAQLFVREFYDQNPISQLIIIATRNGVATVLSPLGSNPVAHIKALSDSLAVGTFGEASLQNLLVQGLAILDALPLYASREILVVFGSIATCDPGDVHATIGELREKKITVSIVCVAGAEVYVLKSASHETGGKHFVPMNEEHLHLHMQMFLQPPQVRADTLAPSLIRMGFPVLRTITSDLPPKKCLNDLIERRVGYECPRCSAWLSDVPIECVLCGLTLLSSPHLARSYHHLFPVPRF---------TEKSVSGAAEADQQRA----------CSACLRSLAAGGESVAAECPRCSEEFCIECDSFIHESLHNCPGCENGGI 391          
BLAST of Gcaud2308.t1 vs. uniprot
Match: M2Y5R3_GALSU (General transcription factor IIH subunit n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y5R3_GALSU)

HSP 1 Score: 335 bits (860), Expect = 4.690e-109
Identity = 171/391 (43.73%), Postives = 238/391 (60.87%), Query Frame = 0
Query:   19 YAWESSKIRSWEQIEEDPETGRLKSYQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGCKTMLRKEKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGC 409
            Y+WE   +RSWE +EED ETG++K      +   K+ R +    VRRG+IRF V+I+D+S+  + TD+KPSR ++ +   Q F+  +F++NPISQL+V++ RDG A +LS+  SN + H E V+ A++ G  GN SLQN L VA + L S+P YG +E++I Y S+S+CDPGDI QTIE L  E+IRC+ IG+ AELYIL+ L  +  G+Y +  NE H  +     V+P   +      +L+RMGFP L+  ++P +  N+  L+ +  + CPRC     EIP EC LCGL LVSS  LARSYHHLFPV  F  ++E +    QS+  PN                 C  CK     E +   +CP C N+FC  CD FIHD L++CPGC
Sbjct:   13 YSWEQDIVRSWETLEED-ETGKIKDLSSFERSRVKRKRKNTQQNVRRGLIRFLVLILDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVLRDGVAEKLSSMGSNPRQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLILYNSISSCDPGDIRQTIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLLELLEDFVVPSALIENNTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYGEIPIECVLCGLILVSSSQLARSYHHLFPVANFHELEEDKYK--QSHFQPN----------------YCFACKGTFPFEGSEYFVCPNCQNIFCGICDIFIHDGLNNCPGC 383          
BLAST of Gcaud2308.t1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 2.940e-108
Identity = 175/404 (43.32%), Postives = 245/404 (60.64%), Query Frame = 0
Query:   18 GYAWESSKIRSWEQIEEDPETGRLKSYQIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQ---VSASLIRMGFPMLERLEQPTL-YCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSER-------VTELLNNDSVRCTGCKTMLRKEKAL-RLLCPKCLNVFCIDCDSFIHDSLHHCPGC 409
            GYAWE    R+WE +EED E G +K+ +   +R ++  R  G   ++RG+IR+  + +D+S+++   D++PSR  + +  VQ F+  +FDQNP+SQL +++TR+G+A +++  S N K H+EA+ K S     G ASLQN L +A  +L +VP YG +E+++ Y SLSTCDPGDIH+TI  L + K+R S +GLGAE+++LR LT++  G Y IA +E H+R+S      PPPT   +   + A L+RMGFP   +   P+L Y  N       GY CPRC    SE+PSEC +C L LVSSPHLARSYHHLFPVP+F  +    P                        TE  +  S  C GC   LR    L R  CP+C + FC+DCD ++HDSLH+CPGC
Sbjct:   14 GYAWEKGFERTWEGVEED-EHGNIKTREEGQRRNRRVRRRVGGESIKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDS--DTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGC---LRDLSGLPRYRCPECRSAFCLDCDMYVHDSLHNCPGC 411          
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A1X2GE48_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GE48_9FUNG)

HSP 1 Score: 321 bits (822), Expect = 2.500e-103
Identity = 173/395 (43.80%), Postives = 233/395 (58.99%), Query Frame = 0
Query:   18 GYAWESSKIRSWEQIEEDPETGRLKSY--QIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGCKTMLRK-EKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGC 409
            GY+WE    RSW+ ++ED E GRL S   Q+  QR +++   D    ++RGIIR   ++VD+S+++   DL+PSR +L I   Q FI EFFDQNPISQL +I+T DG A +L+  S N   H  A+Q  S +   G  SLQN+L +A+ ++  VP +G KEII+ +GSL+TCDPGDIH+TI+SL  E +R S +GL AE+ I + ++    G+Y +  NE HF+D     V PPP    + +ASL+ MGFP    +E  T  C         GY CPRC + + E+PS+C +CGLTLVSSPHLARSYHHLFPV  F  +  R+P                        +  C  C     K + A +  CPKC   FC DCD FIH+ LH+CPGC
Sbjct:   29 GYSWEEEYKRSWDVLQEDAE-GRLSSVVAQLQQQRKRRRHLKD-TDVIQRGIIRHVFLVVDLSEAMNDKDLRPSRIELTIMYAQQFITEFFDQNPISQLGIIVTHDGIAEKLTELSGNPSDHTRALQNKSNIETSGEPSLQNALQLARASMVGVPNHGSKEIIMVFGSLTTCDPGDIHETIDSLQREMVRVSIVGLAAEVQICKVISHATKGSYGVILNEAHFKDLLFEAVPPPPVAPNKSTASLVTMGFPK-RLMEHHTSLCVCHAKLTSGGYICPRCKSKVCELPSDCDICGLTLVSSPHLARSYHHLFPVDNFDEI--RQP----------------------GHTTHCYSCLAYFDKNDLAGQFTCPKCKKEFCADCDLFIHEVLHNCPGC 396          
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A4P9XPD2_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XPD2_9FUNG)

HSP 1 Score: 321 bits (823), Expect = 2.670e-103
Identity = 172/417 (41.25%), Postives = 255/417 (61.15%), Query Frame = 0
Query:    8 DDEDIKRIREGYAWESSKIRSWEQIEEDPETGRLKSY--QIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTL-YCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGCKTM---------LRKEKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGCGNQ 412
            DDED  +  +G AWE  K RSW+ ++ED E G L+S    I  Q+ ++++  D  + ++RGIIRF  +++D+S ++   DL+PSR DL +   +SFI E+FDQNPISQL +I+TRDG A +L+  S N   HI A+++       G  SLQN+L  A+++L+ VP +G +E+++  GSL+TCDPG+I  TI+    EKIRCS IGL AE+ + R + K+  GTY +  NE H++D     V PP   +   +ASL+ MGFP       P++  C+   + G  GY CP+CSA + E+P++C +CG+ LV+SPHLARSYHHLFPV  FV V         ++GA               D+ RC GC++          L +  + R  CP+C ++FC++CD F+H++LH+CPGC  +
Sbjct:   22 DDEDTGK-EQGLAWEEFK-RSWDVLQEDEE-GSLQSVVATIKQQQIRRRLLRDTDT-IQRGIIRFLFLVLDLSNAMLEKDLRPSRLDLTLTLAESFIGEYFDQNPISQLGIIITRDGVAEKLTELSGNPMEHIRALKEKKNKETAGEPSLQNALETARSSLSHVPTHGSREVLVLCGSLTTCDPGNIFDTIDRFKREKIRCSVIGLTAEVQVCRTIAKETNGTYGVVLNEPHYKDLLFELVTPPAVTSSAEAASLVAMGFPRRITERTPSMCMCHKKPVLG--GYVCPQCSAKVCELPTDCDVCGMALVASPHLARSYHHLFPVKNFVEVK------WDASGA---------------DTARCFGCRSSFETPPQSGALAQRASDRFRCPECKHLFCLECDLFVHEALHNCPGCAQR 411          
BLAST of Gcaud2308.t1 vs. uniprot
Match: A0A1X2IXS6_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IXS6_9FUNG)

HSP 1 Score: 320 bits (821), Expect = 3.650e-103
Identity = 167/395 (42.28%), Postives = 236/395 (59.75%), Query Frame = 0
Query:   18 GYAWESSKIRSWEQIEEDPETGRLKSY--QIDHQRAKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQSFIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPGGNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLVSEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPPTVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISEIPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPNDAHSERVTELLNNDSVRCTGCKTMLRK-EKALRLLCPKCLNVFCIDCDSFIHDSLHHCPGC 409
            GY+WE    RSW+ ++ED E GRL S   Q+  QR ++++  D    ++RGIIR   +I+D+S+++   DL+PSR +L +  VQ FI EFFDQNPISQL +I+TRDG A +L+    N   H  A+Q    +   G  SLQN+L +A+ ++  VP +G KE+++ +G+L+TCDPGDIH+TI+ L  + +R S +GL AE+ I R L++   G+Y +  NE H++D     + PP   + + +ASL+ MGFP     +  TL   + N     GY CPRC + + E+PS+C +CGLTLVSSPHLARSYHHLFPV  F  +  R+P                        S  C  C     K + A +  CPKC + FC DCD FIH+ LH+CPGC
Sbjct:   29 GYSWEEEYKRSWDVLQEDAE-GRLSSVVAQLQQQRKRRRLLKD-TDVIQRGIIRHVFLILDLSEAMNEKDLRPSRVELTLTYVQQFINEFFDQNPISQLGIIVTRDGIAEKLTELGGNPSDHTRALQSKKNVETSGEPSLQNALQLARASMVGVPSHGSKEVLLVFGALTTCDPGDIHETIDLLQKDMVRVSIVGLAAEVQICRMLSRATKGSYGVILNEAHYKDLLFEAIPPPAVSSTKNTASLVTMGFPKRLMEDHATLCVCHSNKLTLGGYICPRCKSKVCELPSDCDVCGLTLVSSPHLARSYHHLFPVDNFDEI--RQP----------------------GHSTHCFSCLAPFDKNDLAGQFTCPKCKHEFCADCDIFIHEVLHNCPGC 397          
The following BLAST results are available for this feature:
BLAST of Gcaud2308.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITA6_9FLOR5.500e-26280.14General transcription factor IIH subunit n=1 Tax=G... [more]
R7Q7Q8_CHOCR8.220e-20767.00General transcription factor IIH subunit n=1 Tax=C... [more]
A0A7S3EFP8_9RHOD1.130e-11143.84General transcription factor IIH subunit n=3 Tax=R... [more]
A0A1X6P7L4_PORUM1.350e-11151.08VWFA domain-containing protein n=1 Tax=Porphyra um... [more]
A0A5J4YXZ9_PORPP4.650e-11143.70General transcription factor IIH subunit n=1 Tax=P... [more]
M2Y5R3_GALSU4.690e-10943.73General transcription factor IIH subunit n=2 Tax=G... [more]
D7FRP7_ECTSI2.940e-10843.32General transcription factor IIH subunit n=2 Tax=E... [more]
A0A1X2GE48_9FUNG2.500e-10343.80General transcription and DNA repair factor IIH n=... [more]
A0A4P9XPD2_9FUNG2.670e-10341.25General transcription and DNA repair factor IIH n=... [more]
A0A1X2IXS6_9FUNG3.650e-10342.28General transcription and DNA repair factor IIH n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 68..244
e-value: 1.2E-5
score: 34.8
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 70..212
score: 9.918265
IPR004595TFIIH C1-like domainSMARTSM01047C1_4_2coord: 366..411
e-value: 1.2E-13
score: 61.3
IPR004595TFIIH C1-like domainPFAMPF07975C1_4coord: 370..410
e-value: 3.5E-11
score: 43.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 326..418
e-value: 3.2E-15
score: 57.9
IPR012170TFIIH subunit Ssl1/p44PIRSFPIRSF015919TFIIH_SSL1coord: 3..412
e-value: 3.6E-128
score: 424.0
IPR012170TFIIH subunit Ssl1/p44TIGRFAMTIGR00622TIGR00622coord: 288..410
e-value: 5.0E-26
score: 89.6
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 64..251
e-value: 1.5E-65
score: 222.3
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 72..234
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 74..266
e-value: 1.5E-67
score: 227.1
NoneNo IPR availablePANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 13..409
NoneNo IPR availableSUPERFAMILY57889Cysteine-rich domaincoord: 323..409

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:11351..12610 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2308.t1Gcaud2308.t1Gracilaria caudata M_176_S67 malemRNANODE_838_length_17196_cov_5.011166 11351..12610 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2308.t1 ID=Gcaud2308.t1|Name=Gcaud2308.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=420bp
MLVDVDKDDEDIKRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIDHQR
AKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQS
FIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPG
GNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLV
SEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPP
TVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISE
IPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPND
AHSERVTELLNNDSVRCTGCKTMLRKEKALRLLCPKCLNVFCIDCDSFIH
DSLHHCPGCGNQTIRNQSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR004595TFIIH_C1-like_dom
IPR013083Znf_RING/FYVE/PHD
IPR012170TFIIH_SSL1/p44
IPR036465vWFA_dom_sf
IPR007198Ssl1-like