Gcaud2303.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2303.t1
Unique NameGcaud2303.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length313
Homology
BLAST of Gcaud2303.t1 vs. uniprot
Match: A0A2V3IT93_9FLOR (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT93_9FLOR)

HSP 1 Score: 233 bits (595), Expect = 2.470e-66
Identity = 151/289 (52.25%), Postives = 164/289 (56.75%), Query Frame = 0
Query:   33 TVDALLSQAAFLCSRGRHAAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALRAAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEK-----SLPTQLAALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFA-MQTHHTPTRPKCSTSLAIRAYEKALFCNPNYELAKSNL--------------------------AVALCEKSTAIKQADPKLAKKLYKRALALQSCSFDARYNLGVLYAETGKLERALLSYN 289
            +V+ALL+QA+FLC+RGRH AA   V T LS L S D QY  ALVQLAAV +AH+R  DAE TLRRALRAAPDFVPALQ+LATILS NPVHL EALQLLR A  LA  CE       SLP QLAALLTDVGVRLKMAGLPADAV+H++EALEVCPTYAQAMYNMA A     H                                                           AVALCEK T+IK +D                          VLYAET KLERALLSYN
Sbjct:   43 SVEALLAQASFLCARGRHTAAAKAVTTTLSLLNSDDPQYPSALVQLAAVHVAHARFFDAEDTLRRALRAAPDFVPALQALATILSNNPVHLREALQLLRQAVTLASSCETPNFGADSLPLQLAALLTDVGVRLKMAGLPADAVRHYTEALEVCPTYAQAMYNMAVAHADASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVALCEKGTSIKHSDSNXXXXXXXXXXXXXXXXXXXXXXXXVLYAETAKLERALLSYN 331          
BLAST of Gcaud2303.t1 vs. uniprot
Match: A0A7S1XD94_9RHOD (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XD94_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 6.800e-11
Identity = 60/203 (29.56%), Postives = 83/203 (40.89%), Query Frame = 0
Query:  109 LQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLAALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHT---------------------------PTRPKCSTSLAIRAYEKALFCNPNYELAKSNLAVALCEKSTAI-KQADPKLAKKLYKRALALQSCSFDARYNLGVLYAETGKLER 283
            LQ+   +    P    +A+ LLR      P  +  ++   LA L  ++G RLKMAGLPADA+  + +ALE+ P YA A YN+       H                                                    + LA+ N   ALCE  T + K  + K A + YKRA+A  S S +A YN+GV Y +  K ER
Sbjct:  204 LQASLLLQEYEPGRSTDAIALLRQLREHHP--DHPTVNDHLAVLFNELGARLKMAGLPADALGLYQQALELNPNYAVAYYNVGVLYADAHQNEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSLARKNFCTALCELGTLVQKVGNHKEALRHYKRAIAYDSESSEAYYNMGVAYGQCSKFER 404          
BLAST of Gcaud2303.t1 vs. uniprot
Match: A0A7S0ZKC9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKC9_9RHOD)

HSP 1 Score: 57.8 bits (138), Expect = 4.720e-6
Identity = 49/133 (36.84%), Postives = 63/133 (47.37%), Query Frame = 0
Query:   98 ALRAAPDFVPALQSLATILSK-NPVHLPEALQLLRHAFNLAPPCEE-----------------KSLPTQ----------------------LAALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNM 190
            ALR   + V AL +LA +L + +P   P A+ LLR A   A  CE                   S PTQ                      LAALLTD+GVRLK+A L +DA+  ++EAL   P+YAQA YN+
Sbjct:  117 ALRIRSNDVDALHALALVLQETSPSRAPLAVALLRKA---AKSCESARRFVSTLGGGHECQKVNSEPTQNQDPSAVCRLPSNTEISRVSTSLAALLTDIGVRLKLAELSSDAIVMYNEALNADPSYAQAYYNL 246          
The following BLAST results are available for this feature:
BLAST of Gcaud2303.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IT93_9FLOR2.470e-6652.25Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A7S1XD94_9RHOD6.800e-1129.56Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A7S0ZKC9_9RHOD4.720e-636.84Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 265..298
e-value: 0.026
score: 23.7
coord: 72..105
e-value: 13.0
score: 13.9
coord: 150..183
e-value: 22.0
score: 11.9
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 265..298
score: 11.033401
NoneNo IPR availablePFAMPF13414TPR_11coord: 275..311
e-value: 5.4E-8
score: 32.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR44835UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATEDcoord: 35..311
NoneNo IPR availablePROSITEPS50293TPR_REGIONcoord: 265..296
score: 9.83322
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 209..312
e-value: 6.5E-19
score: 70.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 29..199
e-value: 2.8E-17
score: 64.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 34..193
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 150..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:2574..3592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t1Gcaud2303.t1Gracilaria caudata M_176_S67 malemRNANODE_838_length_17196_cov_5.011166 2574..3592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2303.t1 ID=Gcaud2303.t1|Name=Gcaud2303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MTATPLPVTSTRRTPSDSCDSSPRSPPARARPTVDALLSQAAFLCSRGRH
AAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALR
AAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLA
ALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHTP
TRPKCSTSLAIRAYEKALFCNPNYELAKSNLAVALCEKSTAIKQADPKLA
KKLYKRALALQSCSFDARYNLGVLYAETGKLERALLSYNRAVQFNPCLTE
AYNNLGVVHKEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf