Gcaud2290.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2290.t1
Unique NameGcaud2290.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length195
Homology
BLAST of Gcaud2290.t1 vs. uniprot
Match: R7QJQ7_CHOCR (KH type-2 domain-containing protein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QJQ7_CHOCR)

HSP 1 Score: 344 bits (883), Expect = 1.200e-118
Identity = 184/230 (80.00%), Postives = 187/230 (81.30%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPPAPITPVPVM 194
            MAAQISKKKKFVADGVL+AELNELLTRELAEEGYSGVE                                    KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVK YVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQ+PLPD I V EPKEEY PPP P+ PVPVM
Sbjct:    1 MAAQISKKKKFVADGVLYAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQAVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKQYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQQPLPDTITVHEPKEEYVPPPPPVAPVPVM 230          
BLAST of Gcaud2290.t1 vs. uniprot
Match: A0A4P9WN32_9FUNG (30S ribosomal protein S3, chloroplastic n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WN32_9FUNG)

HSP 1 Score: 281 bits (718), Expect = 2.140e-93
Identity = 148/221 (66.97%), Postives = 165/221 (74.66%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPP 185
            MAAQISKK+KFVADGV FAELNE  TRELAEEGYSGVE                                    KRF +PEN+VEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MENGAKGC V VSGKLRA RAK+MKF DG+MI SG PV+D++DTA RHVLLRQGVLGIKV IML  DPTGK GP+KPLPD++ ++EPKE+ TP P
Sbjct:    1 MAAQISKKRKFVADGVFFAELNEFFTRELAEEGYSGVEVRVTPARTEIIIRATRTQSVLGEKGRRIRELTSVVQKRFNFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMENGAKGCEVVVSGKLRAARAKSMKFVDGFMIHSGQPVRDFLDTATRHVLLRQGVLGIKVKIMLETDPTGKAGPKKPLPDMVTILEPKEDETPAP 221          
BLAST of Gcaud2290.t1 vs. uniprot
Match: C6TG91_SOYBN (KH type-2 domain-containing protein n=7 Tax=Fabaceae TaxID=3803 RepID=C6TG91_SOYBN)

HSP 1 Score: 277 bits (709), Expect = 4.520e-92
Identity = 150/224 (66.96%), Postives = 165/224 (73.66%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE--YTPPPA 186
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVE                                    KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE  Y  PPA
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYNRPPA 224          
BLAST of Gcaud2290.t1 vs. uniprot
Match: I3SJI7_LOTJA (KH type-2 domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SJI7_LOTJA)

HSP 1 Score: 277 bits (709), Expect = 4.680e-92
Identity = 147/216 (68.06%), Postives = 161/216 (74.54%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 180
            MA QISKK+KFVADGV FAELNE+LTRELAE+GYSGVE                                    KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 216          
BLAST of Gcaud2290.t1 vs. uniprot
Match: G7KL44_MEDTR (40S ribosomal S3-like protein n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7KL44_MEDTR)

HSP 1 Score: 276 bits (707), Expect = 8.810e-92
Identity = 151/231 (65.37%), Postives = 168/231 (72.73%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPK--EEYTPPPAPITPVPV 193
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GY+GVE                                    KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF   YMISSG PVKDYVD+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PK  EEYT P A + P+PV
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYTRPAAVVAPLPV 231          
BLAST of Gcaud2290.t1 vs. uniprot
Match: I3S6J8_LOTJA (KH type-2 domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3S6J8_LOTJA)

HSP 1 Score: 276 bits (707), Expect = 8.810e-92
Identity = 146/216 (67.59%), Postives = 161/216 (74.54%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 180
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVE                                    KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLGEKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEE 216          
BLAST of Gcaud2290.t1 vs. uniprot
Match: A0A5N4DMU7_CAMDR (40S ribosomal protein S3 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5N4DMU7_CAMDR)

HSP 1 Score: 276 bits (706), Expect = 1.060e-91
Identity = 144/206 (69.90%), Postives = 160/206 (77.67%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQG-----------------------VLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTP 183
            MA QISKK+KFVADG+  AELNE LTRELAE+GYSGVEKRF +PE SVEL+ EKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+ME+GAKGC V VSGKLR QRAK+MKF DG MI SG+PV  YVDTA RHVLLRQG                       VLGIKV IMLP DPTGK GP+KPLPD ++++EPK+E  P
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGAFVPFSDDMMTSQKGHILAFGPCVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILP 206          
BLAST of Gcaud2290.t1 vs. uniprot
Match: V7C2P9_PHAVU (KH type-2 domain-containing protein n=25 Tax=NPAAA clade TaxID=2231382 RepID=V7C2P9_PHAVU)

HSP 1 Score: 276 bits (706), Expect = 1.480e-91
Identity = 146/216 (67.59%), Postives = 161/216 (74.54%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 180
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVE                                    KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 216          
BLAST of Gcaud2290.t1 vs. uniprot
Match: I1MQB5_SOYBN (KH type-2 domain-containing protein n=10 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=I1MQB5_SOYBN)

HSP 1 Score: 276 bits (705), Expect = 1.770e-91
Identity = 146/216 (67.59%), Postives = 162/216 (75.00%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 180
            MA+Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVE                                    KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MASQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 216          
BLAST of Gcaud2290.t1 vs. uniprot
Match: A0A2G8JV19_STIJA (Putative 40S ribosomal protein S3 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JV19_STIJA)

HSP 1 Score: 276 bits (707), Expect = 2.650e-91
Identity = 145/218 (66.51%), Postives = 163/218 (74.77%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVE------------------------------------KRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYT 182
            MAAQISKK+KFVADGV  AELNE LTRELAE+GYSGVE                                    KRF++PE SVEL+ EKVA RGLCAIAQ ESLRYKL+GGLAVRRACYGVLRF+ME+GAKGC V VSGKLR QRAK+MKF DG MI SGNPV+DYVDTA RHV+LRQGVLGIKV IMLP D TGK+GP+KPLPD ++++EPK+E T
Sbjct:    1 MAAQISKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQSVLGEKGRRIRELTAVVQKRFSFPEGSVELYAEKVATRGLCAIAQCESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGNPVRDYVDTAIRHVMLRQGVLGIKVKIMLPFDQTGKSGPKKPLPDAVSIVEPKDEET 218          
The following BLAST results are available for this feature:
BLAST of Gcaud2290.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QJQ7_CHOCR1.200e-11880.00KH type-2 domain-containing protein n=2 Tax=Rhodym... [more]
A0A4P9WN32_9FUNG2.140e-9366.9730S ribosomal protein S3, chloroplastic n=1 Tax=Bl... [more]
C6TG91_SOYBN4.520e-9266.96KH type-2 domain-containing protein n=7 Tax=Fabace... [more]
I3SJI7_LOTJA4.680e-9268.06KH type-2 domain-containing protein n=1 Tax=Lotus ... [more]
G7KL44_MEDTR8.810e-9265.3740S ribosomal S3-like protein n=2 Tax=Medicago tru... [more]
I3S6J8_LOTJA8.810e-9267.59KH type-2 domain-containing protein n=1 Tax=Lotus ... [more]
A0A5N4DMU7_CAMDR1.060e-9169.9040S ribosomal protein S3 n=2 Tax=Boreoeutheria Tax... [more]
V7C2P9_PHAVU1.480e-9167.59KH type-2 domain-containing protein n=25 Tax=NPAAA... [more]
I1MQB5_SOYBN1.770e-9167.59KH type-2 domain-containing protein n=10 Tax=indig... [more]
A0A2G8JV19_STIJA2.650e-9166.51Putative 40S ribosomal protein S3 n=1 Tax=Stichopu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 1..40
e-value: 1.9E-12
score: 49.0
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3D3.30.1140.32coord: 57..184
e-value: 1.7E-60
score: 204.6
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILY54821Ribosomal protein S3 C-terminal domaincoord: 57..156
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 70..152
e-value: 4.9E-24
score: 84.6
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 2..40
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 37..184
NoneNo IPR availablePANTHERPTHR11760:SF51RIBOSOMAL PROTEIN S3, PUTATIVE-RELATEDcoord: 2..40
coord: 37..184
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 111..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_220_length_36054_cov_4.510163contigNODE_220_length_36054_cov_4.510163:16703..17554 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2290.t1Gcaud2290.t1Gracilaria caudata M_176_S67 malemRNANODE_220_length_36054_cov_4.510163 16703..17554 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2290.t1 ID=Gcaud2290.t1|Name=Gcaud2290.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEKRFAYPENSVEL
FVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSV
SVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKV
MIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPPAPITPVPVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015946KH_dom-like_a/b
IPR036419Ribosomal_S3_C_sf
IPR001351Ribosomal_S3_C
IPR018280Ribosomal_S3_CS