Gcaud2283.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2283.t1
Unique NameGcaud2283.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length358
Homology
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BLAST of Gcaud2283.t1 vs. uniprot
Match: A0A2V3IM15_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM15_9FLOR)

HSP 1 Score: 71.2 bits (173), Expect = 7.590e-10
Identity = 112/288 (38.89%), Postives = 120/288 (41.67%), Query Frame = 0 
Query:    1 MKAVTFLALLGVALAAAPTPCPDG-YTAPETTGTYXXXXXXXXXXXXSGDYSAPAGGEA-------------------------PMKTPCPTGAGGDYTAPAGGDXXXXXXXXXXXPSTAXXXXXXXXXXXXXXXXXXXXXTATPCADKXXXXXXXXXXXXXGAAPAYPAGESATSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSAAVAADGSAVIADGDNTVSVAADKESGXXXXXXXXXXXXXXXXXXXVGLGTSR--MYATPCPKPSAGYT 260
            MKAVTFLALLGVALAAAPTPCP G YTAP TT  Y          XX                                     PMKTPCP+  GGDY+A +              PS+ XXXXXXXXX   XXXXXX   T                          PA E                               XXXXXXXX     PGSAAVAADGS VIADGDNTVSVAAD+ SG                   +GL T+   + ATPCPK   GYT
Sbjct:    1 MKAVTFLALLGVALAAAPTPCPKGGYTAPTTTPGYTAGDSPSYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMKTPCPSSKGGDYSATS--------------PSSXXXXXXXXXXAGGXXXXXXTGST--------------------------PATEXXXX---------------------------XXXXXXXXEPTPVPGSAAVAADGSGVIADGDNTVSVAADQTSGSSSANGEEGAVAVAGPGAALGLATAARPVAATPCPK--GGYT 219
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BLAST of Gcaud2283.t1 vs. uniprot
Match: R7QIU2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIU2_CHOCR)

HSP 1 Score: 58.9 bits (141), Expect = 5.650e-6
Identity = 42/85 (49.41%), Postives = 50/85 (58.82%), Query Frame = 0 
Query:  191 PGSAAVAADGSAVIADGDNTVSVAADKESGXXXXXXXXXXXXXXXXXXXVGLGTS-RMYATPCPKP----SAGYTAP-AGGDYAA 269
            PG+AA+AA+GS V A+G+NTVSVAADK SG                   +GLGTS R Y TPCP+P       YTAP A  +YAA
Sbjct:  156 PGTAALAANGSGVEAEGENTVSVAADKTSGSASANGETGSLAAAGPGAALGLGTSERAYKTPCPEPVKEEEPVYTAPEAPEEYAA 240
The following BLAST results are available for this feature:
BLAST of Gcaud2283.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IM15_9FLOR7.590e-1038.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QIU2_CHOCR5.650e-649.41Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..358
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_220_length_36054_cov_4.510163contigNODE_220_length_36054_cov_4.510163:1017..2088 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2283.t1Gcaud2283.t1Gracilaria caudata M_176_S67 malemRNANODE_220_length_36054_cov_4.510163 1017..2088 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2283.t1 ID=Gcaud2283.t1|Name=Gcaud2283.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=358bp
MKAVTFLALLGVALAAAPTPCPDGYTAPETTGTYAAPSAAPTYTAPSGDY
SAPAGGEAPMKTPCPTGAGGDYTAPAGGDYTAPAGGDYTAPSTAPSGGDY
TAPAGGDYATPTTAPTATPCADKGAGYTAPSGGDYAGAAPAYPAGESATS
PATAPAAAPAAAPAAAPAAAPAAPAAETPVATPMPEPTPMPGSAAVAADG
SAVIADGDNTVSVAADKESGSASANGEGGALALAAPGGAVGLGTSRMYAT
PCPKPSAGYTAPAGGDYAAPSTAPSYTAPSGGDYAAPSTAPSGGDYTAPS
GGDYTAPSGGDYTAPSGGDYAAPTTAPAATPCAKDKGAGYTAPSGGDYAG
AAPAYPAX
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