Gcaud2239.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2239.t1
Unique NameGcaud2239.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length248
Homology
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A2V3IRV4_9FLOR (Short-chain dehydrogenase TIC 32, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV4_9FLOR)

HSP 1 Score: 283 bits (725), Expect = 1.950e-92
Identity = 146/193 (75.65%), Postives = 168/193 (87.05%), Query Frame = 0
Query:   55 MSSLNPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            MS+ NPARTAVITGASGGIGAATA +LV TLPT+EHLILAAR+I+KAE+VAEPLR+G S RPVKVTVVPVELS L SVREC+E++S  L  +PLDLLINNAG+MACPLMYS M G+ G VELQYATNHLSHAALT+ L+  +EKSD  RAIFVSSLAVR AS RTTAP++ ERVE +LK+G YE+W+MYGESK
Sbjct:    1 MSAANPARTAVITGASGGIGAATARSLVSTLPTLEHLILAARDINKAESVAEPLRKGASARPVKVTVVPVELSDLISVRECAEKISHRLGGEPLDLLINNAGIMACPLMYSSMRGENGYVELQYATNHLSHAALTTWLLSEMEKSDCARAIFVSSLAVRFASGRTTAPVVEERVEGVLKNGGYEKWRMYGESK 193          
BLAST of Gcaud2239.t1 vs. uniprot
Match: R7Q4U6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4U6_CHOCR)

HSP 1 Score: 179 bits (453), Expect = 6.470e-51
Identity = 100/230 (43.48%), Postives = 141/230 (61.30%), Query Frame = 0
Query:   25 SPVTWQPAFSSAVPL-------IARSSRHVSRKRDFRMSSLNPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            +P+   PA + A PL        ++ S    R+     + + PARTAV+TGAS GIGA TA  LV+ L T++HL L  R+++K E +A PLR   S   + +T+VPVEL+S  S+  C+E +S  L+  PLDLLI NAG+MA PL ++    + G +E Q+A NHLSHA L+  L+P L   D GR +FVSS+A  +A  R T P+  ER +N L + +Y +W MY +SK
Sbjct:    4 TPIQNPPAAAFATPLSPHRFPTCSQKSTQSDRRHPIMAAKMFPARTAVVTGASSGIGAETARGLVRDLNTLDHLFLCCRDVAKGERIAAPLR--SSSEGLDITIVPVELTSPTSIVSCAETLSAKLNGAPLDLLICNAGIMAPPLGFAD---EFGEIEQQFAVNHLSHALLSQRLLPSLRAGDGGRVVFVSSMAASLARSRDTPPVSAERTKNELNEENYAKWNMYADSK 228          
BLAST of Gcaud2239.t1 vs. uniprot
Match: UPI001E1E07A5 (retinol dehydrogenase 13-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E07A5)

HSP 1 Score: 122 bits (307), Expect = 4.080e-31
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 0
Query:   59 NPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSL 210
            N  +TAVITGASGGIGA TA  L  ++P +E L+L ARN  KAE VA  +R       +   VVP+EL+SL SVR+C++ V+  L  +PLD+LINNAGVMACPL ++  +G    +ELQY  NH+  A  + SL P +  +D GR I  ++L
Sbjct:    3 NAGKTAVITGASGGIGAETALRLRASMPALERLVLCARNTDKAEEVAARVREAAGSG-LNTHVVPLELASLASVRKCADDVARELGGEPLDVLINNAGVMACPLAFTS-DG----IELQYGVNHVGPALTSVSLHPGVVMTDLGRHITPATL 148          
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A848SNR4_9SPHN (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=A0A848SNR4_9SPHN)

HSP 1 Score: 112 bits (280), Expect = 7.680e-26
Identity = 75/186 (40.32%), Postives = 103/186 (55.38%), Query Frame = 0
Query:   62 RTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            +TA ITG + G+G  TA  +        H+I+AAR++ KAEA A+ +R G      KV V+  +L+SL SVREC+E  +    +  +DLLINNAGVMACP    Q E   G  E+Q+ TNH+ H  LT+ LMPL+EK D+ R + +SS      +          R         YE+W  YG+SK
Sbjct:   25 KTAFITGGASGLGTETARAMAARGA---HVIIAARDLGKAEAAAKEIREGSGSD--KVDVIACDLASLDSVRECAEAANAKYEK--IDLLINNAGVMACP----QGETADG-FEMQFGTNHVGHFLLTNLLMPLVEKGDNPRIVNLSSRGHHFDTVHXXXXXXXNR--------DYEKWMSYGQSK 190          
BLAST of Gcaud2239.t1 vs. uniprot
Match: UPI001E2CF7B0 (oxidoreductase n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E2CF7B0)

HSP 1 Score: 110 bits (275), Expect = 3.580e-25
Identity = 79/186 (42.47%), Postives = 106/186 (56.99%), Query Frame = 0
Query:   62 RTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            RTA++TGA+ G+G  TA  L +   T+   I+A RN  KA    + +RR  +     VT +P++L+SL SV E +ERV        LDLLINNAGVMA P   + ++G     E Q+ATNHL H ALT+ LM L+  + H R + VSS A ++   R    L+GER         YERW  YG+SK
Sbjct:   15 RTALVTGANSGLGLQTATRLARAGATV---IMACRNPDKAATALDEVRR--AAPDATVTTLPLDLASLDSVSEAAERVR--ADHDRLDLLINNAGVMAIPRGVT-VDG----FETQFATNHLGHFALTAHLMDLVMATPHSRVVNVSSNAHKMGRMRFD-DLMGER--------RYERWSAYGQSK 179          
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A0A2BJ69_9CYAN (Short-chain dehydrogenase/reductase (SDR) n=1 Tax=Prochlorococcus sp. MIT 0601 TaxID=1499498 RepID=A0A0A2BJ69_9CYAN)

HSP 1 Score: 110 bits (275), Expect = 3.650e-25
Identity = 78/186 (41.94%), Postives = 105/186 (56.45%), Query Frame = 0
Query:   62 RTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            R A ITGA+ G+G  TA+ L+    T+   IL  RNI KAE   E L  G   + V+V  + ++LS L +V    E+++  L    LDLLINNAGVMA P  +S+      R+ELQ+A NH+SH ALT +L+PLL K   GR + VSS A +   +     L GE+         Y+RWK Y +SK
Sbjct:   14 RIAFITGANSGLGLDTAYALLSKGATV---ILGCRNIEKAEQAREKLVDGTGSQTVEV--LQIDLSDLENVNRALEKIA--LKYTKLDLLINNAGVMAPPQTFSKQ-----RLELQFAVNHISHMALTLNLLPLLAKKPGGRVVTVSSGA-QYMGKINWEDLQGEK--------KYDRWKAYSQSK 178          
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A424JL66_9PROT (SDR family NAD(P)-dependent oxidoreductase n=2 Tax=Bacteria TaxID=2 RepID=A0A424JL66_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.040e-24
Identity = 73/187 (39.04%), Postives = 103/187 (55.08%), Query Frame = 0
Query:   62 RTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRP-VKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            + AV+TGASGG+GA TA  L      +    LAAR++ KAE VA  +R   + +P  +V V  ++L+SL  +R+C++R+ +S     LDLLINNAGVMACPL+ ++        ELQ ATNH+ H   T  L+P L      R + +SS   R+ S     P    R         Y++W  YG+SK
Sbjct:   23 KRAVVTGASGGLGAETARALCGAGAEVT---LAARDVEKAEGVAASIR---AAQPGARVAVAHLDLTSLDDIRQCADRILES--GDSLDLLINNAGVMACPLIRTE-----NGWELQLATNHIGHFLFTGRLLPALRAGSSARIVNLSSAGHRLDSMHFDDPHFEVR--------EYDKWAAYGQSK 188          
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A3L8BYI4_9GAMM (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Ketobacter sp. TaxID=2083498 RepID=A0A3L8BYI4_9GAMM)

HSP 1 Score: 108 bits (270), Expect = 1.470e-24
Identity = 76/193 (39.38%), Postives = 112/193 (58.03%), Query Frame = 0
Query:   55 MSSLNPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            +S LN  +T +ITGA+ GIG   A  L        H+ILA RN +K +A  + ++R  +    ++T++ ++LSSL SVR+C   V+       LD+L+NNAGVMA P  YS+        E Q+ TNHL H ALT+ L+PLLEK++ GR + VSS+A R+   R          +++  +  Y RW+ YG+SK
Sbjct:    8 ISDLNN-KTILITGANSGIGFEAAKVLAAKGA---HVILACRNPNKGQAAIDAIKRDHA--GAQLTLMSLDLSSLQSVRDCCAEVAARFDH--LDVLVNNAGVMAPP--YSKTADGF---ESQFGTNHLGHFALTARLLPLLEKAEAGRVVVVSSVAHRLGYIR---------FQDLNWEKRYSRWQAYGQSK 178          
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A1S2Y0G4_CICAR (short-chain dehydrogenase TIC 32, chloroplastic-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Y0G4_CICAR)

HSP 1 Score: 107 bits (266), Expect = 7.380e-24
Identity = 77/191 (40.31%), Postives = 108/191 (56.54%), Query Frame = 0
Query:   63 TAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRE-CSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDH-----GRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            TA++TGAS GIGA T  T V  L  + H+I+  RN+  A+ V E + +       K+ V+ ++LSSL SV++  SE +S  L   PL++LINNAG+MACP M S+       +ELQ+ATNHL H  LT  L+  ++K+       GR + VSS A   A         G R + I    SY +W+ YG+SK
Sbjct:   31 TAIVTGASSGIGAET--TRVLALRGV-HVIMGVRNLVAAKDVKETILK--DIPSAKIDVMELDLSSLESVKKFASEFISSGL---PLNILINNAGIMACPFMLSK-----DNIELQFATNHLGHFLLTDLLLETMKKTTRESKKDGRIVIVSSDAHLFAYSE------GIRFDKINDQSSYSKWRAYGQSK 202          
BLAST of Gcaud2239.t1 vs. uniprot
Match: A0A7C7YIA1_9DELT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YIA1_9DELT)

HSP 1 Score: 107 bits (266), Expect = 7.900e-24
Identity = 73/183 (39.89%), Postives = 101/183 (55.19%), Query Frame = 0
Query:   65 VITGASGGIGAATAHTLVKTLPTIEHLILAARNISKAEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDLLINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSDHGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESK 247
            ++TGASGG+GA TA  L      +    L AR++SKAEAVAE +R G   R V VT   +EL+SL SVR+C++R  +    + LD+LINNAG+M C L  +         ELQ ATNH+ H  LT  L+P L  +   R + +SS   R+       P    R        +Y++W+ YG+SK
Sbjct:   26 LVTGASGGLGAETARALASVGARVT---LGARDVSKAEAVAETIRAGGRERQVDVT--SLELTSLESVRDCAKRFLEE--NERLDVLINNAGLMGCDLARNSHGW-----ELQLATNHIGHFLLTCMLVPALRAAAPARIVNLSSAGHRLGDVNFEDPHFESR--------AYDKWEAYGQSK 188          
The following BLAST results are available for this feature:
BLAST of Gcaud2239.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRV4_9FLOR1.950e-9275.65Short-chain dehydrogenase TIC 32, chloroplastic n=... [more]
R7Q4U6_CHOCR6.470e-5143.48Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1E07A54.080e-3148.68retinol dehydrogenase 13-like n=1 Tax=Mercenaria m... [more]
A0A848SNR4_9SPHN7.680e-2640.32SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI001E2CF7B03.580e-2542.47oxidoreductase n=1 Tax=Rhabdothermincola sp. EGI L... [more]
A0A0A2BJ69_9CYAN3.650e-2541.94Short-chain dehydrogenase/reductase (SDR) n=1 Tax=... [more]
A0A424JL66_9PROT1.040e-2439.04SDR family NAD(P)-dependent oxidoreductase n=2 Tax... [more]
A0A3L8BYI4_9GAMM1.470e-2439.38SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1S2Y0G4_CICAR7.380e-2440.31short-chain dehydrogenase TIC 32, chloroplastic-li... [more]
A0A7C7YIA1_9DELT7.900e-2439.89SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 146..157
score: 49.87
coord: 243..248
score: 12.92
coord: 63..80
score: 46.64
coord: 196..212
score: 26.72
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 63..214
e-value: 3.3E-18
score: 65.9
NoneNo IPR availableGENE3D3.40.50.720coord: 61..248
e-value: 5.0E-34
score: 119.4
NoneNo IPR availablePANTHERPTHR24320:SF225SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDRcoord: 59..247
NoneNo IPR availablePANTHERPTHR24320RETINOL DEHYDROGENASEcoord: 59..247
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 62..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2174_length_6571_cov_4.069753contigNODE_2174_length_6571_cov_4.069753:2..743 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2239.t1Gcaud2239.t1Gracilaria caudata M_176_S67 malemRNANODE_2174_length_6571_cov_4.069753 2..743 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2239.t1 ID=Gcaud2239.t1|Name=Gcaud2239.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MPVCVSLLTRKKEVLHHMGRVPSMSPVTWQPAFSSAVPLIARSSRHVSRK
RDFRMSSLNPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISK
AEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDL
LINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSD
HGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESKX
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR036291NAD(P)-bd_dom_sf