Gcaud2239.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2239.t1
Unique Name	Gcaud2239.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2174_length_6571_cov_4.069753	contig	NODE_2174_length_6571_cov_4.069753:2..743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1499498.EV05_0050
PFAMs	adh_short
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01008
KEGG ko	ko:K00218
KEGG Reaction	R03845,R06286
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue	4.5e-25
EggNOG OGs	COG1028@1\|root,COG1028@2\|Bacteria,1G1UE@1117\|Cyanobacteria,1MPKH@1212\|Prochloraceae
EC	1.3.1.33
Description	Belongs to the short-chain dehydrogenases reductases (SDR) family
COG category	IQ
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2239	Gcaud2239	Gracilaria caudata M_176_S67 male	gene	NODE_2174_length_6571_cov_4.069753 2..743 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2239.t1.CDS1	Gcaud2239.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2174_length_6571_cov_4.069753 2..743 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2239.t1.exon1	Gcaud2239.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2174_length_6571_cov_4.069753 2..743 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2239.t1.start1	Gcaud2239.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2174_length_6571_cov_4.069753 741..743 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2239.t1	Gcaud2239.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2174_length_6571_cov_4.069753 2..743 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2174_length_6571_cov_4.069753:2..743-
coding sequence from alignment at NODE_2174_length_6571_cov_4.069753:2..743-

mRNA sequence

>Gcaud2239.t1 ID=Gcaud2239.t1|Name=Gcaud2239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=248bp
MPVCVSLLTRKKEVLHHMGRVPSMSPVTWQPAFSSAVPLIARSSRHVSRK
RDFRMSSLNPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISK
AEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDL
LINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSD
HGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESKX

spliced messenger RNA

>Gcaud2239.t1 ID=Gcaud2239.t1|Name=Gcaud2239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=742bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:2..743- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTATGCGTATCACTGCTCACTCGAAAGAAAGAAGTGCTCCATCA
CATGGGAAGGGTGCCAAGCATGTCTCCAGTAACCTGGCAACCAGCATTCA
GTTCCGCAGTGCCGCTGATCGCTCGATCATCTCGCCATGTTTCACGTAAG
CGAGATTTCCGAATGTCCTCGTTGAATCCCGCTCGGACCGCCGTCATAAC
AGGTGCGTCAGGTGGTATTGGTGCTGCTACAGCACATACGCTGGTAAAGA
CGCTCCCAACGATAGAACATCTGATACTAGCCGCACGGAATATCAGCAAG
GCCGAAGCGGTGGCAGAGCCCCTTCGAAGGGGCGATTCATGCAGACCAGT
GAAGGTTACTGTTGTTCCGGTGGAGCTTTCTAGCTTAGGAAGCGTGAGAG
AATGCTCTGAACGAGTTTCGGACTCCCTGAGCGAGCAGCCGCTTGATCTG
CTGATCAACAACGCGGGCGTAATGGCATGTCCATTGATGTATTCACAAAT
GGAAGGGAAACTGGGACGCGTTGAACTGCAATATGCCACAAATCACCTTT
CTCACGCTGCCCTCACATCCTCTCTGATGCCGCTTCTTGAAAAAAGCGAT
CACGGCAGAGCCATTTTTGTTTCTTCGTTGGCCGTGCGTATCGCATCAAG
ACGCACTACAGCGCCGCTTATTGGGGAGCGAGTTGAGAATATTCTGAAGG
ACGGAAGTTATGAAAGATGGAAGATGTACGGCGAGTCCAAAC

protein sequence of Gcaud2239.t1

>Gcaud2239.t1 ID=Gcaud2239.t1|Name=Gcaud2239.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MPVCVSLLTRKKEVLHHMGRVPSMSPVTWQPAFSSAVPLIARSSRHVSRK
RDFRMSSLNPARTAVITGASGGIGAATAHTLVKTLPTIEHLILAARNISK
AEAVAEPLRRGDSCRPVKVTVVPVELSSLGSVRECSERVSDSLSEQPLDL
LINNAGVMACPLMYSQMEGKLGRVELQYATNHLSHAALTSSLMPLLEKSD
HGRAIFVSSLAVRIASRRTTAPLIGERVENILKDGSYERWKMYGESKX

mRNA from alignment at NODE_2174_length_6571_cov_4.069753:2..743-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2239.t1 ID=Gcaud2239.t1|Name=Gcaud2239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=742bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:2..743- (Gracilaria caudata M_176_S67 male)
ATGCCGGTATGCGTATCACTGCTCACTCGAAAGAAAGAAGTGCTCCATCA
CATGGGAAGGGTGCCAAGCATGTCTCCAGTAACCTGGCAACCAGCATTCA
GTTCCGCAGTGCCGCTGATCGCTCGATCATCTCGCCATGTTTCACGTAAG
CGAGATTTCCGAATGTCCTCGTTGAATCCCGCTCGGACCGCCGTCATAAC
AGGTGCGTCAGGTGGTATTGGTGCTGCTACAGCACATACGCTGGTAAAGA
CGCTCCCAACGATAGAACATCTGATACTAGCCGCACGGAATATCAGCAAG
GCCGAAGCGGTGGCAGAGCCCCTTCGAAGGGGCGATTCATGCAGACCAGT
GAAGGTTACTGTTGTTCCGGTGGAGCTTTCTAGCTTAGGAAGCGTGAGAG
AATGCTCTGAACGAGTTTCGGACTCCCTGAGCGAGCAGCCGCTTGATCTG
CTGATCAACAACGCGGGCGTAATGGCATGTCCATTGATGTATTCACAAAT
GGAAGGGAAACTGGGACGCGTTGAACTGCAATATGCCACAAATCACCTTT
CTCACGCTGCCCTCACATCCTCTCTGATGCCGCTTCTTGAAAAAAGCGAT
CACGGCAGAGCCATTTTTGTTTCTTCGTTGGCCGTGCGTATCGCATCAAG
ACGCACTACAGCGCCGCTTATTGGGGAGCGAGTTGAGAATATTCTGAAGG
ACGGAAGTTATGAAAGATGGAAGATGTACGGCGAGTCCAAAC

Coding sequence (CDS) from alignment at NODE_2174_length_6571_cov_4.069753:2..743-

>Gcaud2239.t1 ID=Gcaud2239.t1|Name=Gcaud2239.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=742bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:2..743- (Gracilaria caudata M_176_S67 male)
ATGCCGGTATGCGTATCACTGCTCACTCGAAAGAAAGAAGTGCTCCATCA
CATGGGAAGGGTGCCAAGCATGTCTCCAGTAACCTGGCAACCAGCATTCA
GTTCCGCAGTGCCGCTGATCGCTCGATCATCTCGCCATGTTTCACGTAAG
CGAGATTTCCGAATGTCCTCGTTGAATCCCGCTCGGACCGCCGTCATAAC
AGGTGCGTCAGGTGGTATTGGTGCTGCTACAGCACATACGCTGGTAAAGA
CGCTCCCAACGATAGAACATCTGATACTAGCCGCACGGAATATCAGCAAG
GCCGAAGCGGTGGCAGAGCCCCTTCGAAGGGGCGATTCATGCAGACCAGT
GAAGGTTACTGTTGTTCCGGTGGAGCTTTCTAGCTTAGGAAGCGTGAGAG
AATGCTCTGAACGAGTTTCGGACTCCCTGAGCGAGCAGCCGCTTGATCTG
CTGATCAACAACGCGGGCGTAATGGCATGTCCATTGATGTATTCACAAAT
GGAAGGGAAACTGGGACGCGTTGAACTGCAATATGCCACAAATCACCTTT
CTCACGCTGCCCTCACATCCTCTCTGATGCCGCTTCTTGAAAAAAGCGAT
CACGGCAGAGCCATTTTTGTTTCTTCGTTGGCCGTGCGTATCGCATCAAG
ACGCACTACAGCGCCGCTTATTGGGGAGCGAGTTGAGAATATTCTGAAGG
ACGGAAGTTATGAAAGATGGAAGATGTACGGCGAGTCCAAAC