Gcaud2231.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2231.t1
Unique NameGcaud2231.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length300
Homology
BLAST of Gcaud2231.t1 vs. uniprot
Match: A0A2V3IFS7_9FLOR (Auxilin-related protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFS7_9FLOR)

HSP 1 Score: 154 bits (389), Expect = 1.650e-38
Identity = 153/533 (28.71%), Postives = 191/533 (35.83%), Query Frame = 0
Query:    3 KLELTRAREICLRMEERNRCYIDAVRYREPVSEASASQEDVRKADDKMVELTQRTNELATTISDAIKRRTVLIESIVADTIEFQHRFYVDSVRCMERAIDVIGPEKLANMRS--EDNR---------------------------------------------------------------------------------------------------VTNPCGREPTSNSHPSNGIGKRKSTSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIYPSGGVEQKESVRRYPTGGRRTRNEYPSSRTRVT----------------------------------------------------ADSAPFLSLRE------------------------------------------------------------------------------------EELLQREQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMN 298
            K EL +AR++ + ME+R RCY+DA RY E +S+ASAS +DVRKA+DKM EL QRTNEL + +S+A+KRR  L+ESIVA+TIEFQ RFYVDS R MERAID IG  KLA MR+  ED                                                                                                     + NP GRE TS S+P+NGIGKR++T                                                        YP+  V QKESV  YPTGG R+R++YPS+R+R                                                      + S P +S  E                                                                                    EEL +REQL ++HE EIKARADEKLA +RERE+A AK+ EE DNA +AAERK+N
Sbjct:  137 KTELNKARQVNIHMEQRKRCYLDAARYHERISDASASPDDVRKAEDKMAELIQRTNELLSIMSEAVKRRAALVESIVAETIEFQRRFYVDSARSMERAIDAIGSTKLAAMRANAEDGTERRNTTGINTQQNEPPVHAPQPPPPRRATTMPVHDTSSIWNELDDXXXXXXEPDEDAYEPRPKSNIYTDNIFDDPPAAQPEVENPRRSDAGSASDSSTGIANPFGRERTSTSYPANGIGKREAT--------------------------------------------------------YPTAAVGQKESVSSYPTGGSRSRDKYPSARSRTAPKPPPGPTSSFAPSSSRESTTEKSRTSRRAEPEPDLFGFDTPTPXXXARSRRSPSPPAVSSTEDLLDLGGTTSSSTTQRPMGRSSSASAMEGDLLGDLGATPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTFSHAEELRRREQLHQQHEDEIKARADEKLAAVREREKAHAKEREEKDNARSAAERKIN 613          
BLAST of Gcaud2231.t1 vs. uniprot
Match: R7QNA7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNA7_CHOCR)

HSP 1 Score: 62.4 bits (150), Expect = 2.520e-7
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 0
Query:  231 RVTADSAPFLSLREEELLQREQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMN 298
            R +A +AP  S +    L+REQLR+KHE EIKARADEKLA +R+RERA  K+ E+ DNA   AE K+N
Sbjct:  143 RSSAPTAPSASGQN---LEREQLRRKHEAEIKARADEKLAVVRQRERAGEKEREQKDNARGMAEAKVN 207          
The following BLAST results are available for this feature:
BLAST of Gcaud2231.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFS7_9FLOR1.650e-3828.71Auxilin-related protein 2 n=1 Tax=Gracilariopsis c... [more]
R7QNA7_CHOCR2.520e-757.35Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1377_length_11054_cov_8.073611contigNODE_1377_length_11054_cov_8.073611:8471..9537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1Gcaud2231.t1Gracilaria caudata M_176_S67 malemRNANODE_1377_length_11054_cov_8.073611 8471..9537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MDKLELTRAREICLRMEERNRCYIDAVRYREPVSEASASQEDVRKADDKM
VELTQRTNELATTISDAIKRRTVLIESIVADTIEFQHRFYVDSVRCMERA
IDVIGPEKLANMRSEDNRVTNPCGREPTSNSHPSNGIGKRKSTSTGVANP
CGRERTCNSYPSNGIGQRESTFIGVENPCERGRTTNSYPSNGIGKRESIY
PSGGVEQKESVRRYPTGGRRTRNEYPSSRTRVTADSAPFLSLREEELLQR
EQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMNA*
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