Gcaud2224.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2224.t1
Unique NameGcaud2224.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Homology
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A2V3IWG7_9FLOR (Spherulin-1B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWG7_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 2.230e-71
Identity = 108/170 (63.53%), Postives = 126/170 (74.12%), Query Frame = 0
Query:    1 MNKTITASILILLPFITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHGVIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLVPVNL 170
            M   I  + L L  F+  A  SIPSFG QT  AIR  L D+DFRI P  G II NE F V+IA + +FPAL GQDVQ+Q+ RV ++A QPF+PHYHPRG E LNAL G FR++FLFEGLNPR VTNI+  G+STVFPQGL H T CIS++DC FLS FN+ADPGLVPVNL
Sbjct:    1 MKCIIALAALTLAAFVNQAAASIPSFGLQTAAAIRSGLQDSDFRINPSKGQIIKNEKFVVQIANVADFPALGGQDVQSQVARVLVRAGQPFLPHYHPRGTETLNALAGVFRVSFLFEGLNPRNVTNILRPGDSTVFPQGLPHATTCISKTDCLFLSVFNTADPGLVPVNL 170          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A2V3IXN5_9FLOR (Putative germin-like protein 2-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXN5_9FLOR)

HSP 1 Score: 220 bits (561), Expect = 6.370e-71
Identity = 109/170 (64.12%), Postives = 125/170 (73.53%), Query Frame = 0
Query:    1 MNKTITASILILLPFITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHGVIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLVPVNL 170
            M   I  + L L  F+  A  SIPSFG Q+   IR  L D+DFRI P  G IIN   F V+IA + +FPAL GQDVQ+QIVRV ++A QPFIPHYHPRG E LNAL G FR++FL EGL+PR VTNI+H G+STVFPQGL HETVCIS+ DC FLS FNSADPGLVPV L
Sbjct:    1 MKSIIALTALTLAVFVNQAAASIPSFGLQSAAGIRSGLQDSDFRINPSKGQIINTPGFTVQIANVADFPALGGQDVQSQIVRVLVRAGQPFIPHYHPRGTETLNALAGVFRVSFLSEGLSPRNVTNILHPGDSTVFPQGLPHETVCISKMDCLFLSVFNSADPGLVPVTL 170          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A2V3IBZ5_9FLOR (Cupin type-1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBZ5_9FLOR)

HSP 1 Score: 152 bits (383), Expect = 8.770e-44
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 0
Query:    1 MNKTITASILILLPFITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHGVIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGE 132
            M   I  + L L  F+  A  SIPSFG QT  AIR  L D+DFRI P  G II NE F V+IA + +FPAL GQDVQ+Q+ RV ++A QPF+PHYH  G E LNAL G FR++FLFEGL+PR VTNI+  G+
Sbjct:    1 MKCIIALAALTLAAFVNQAAASIPSFGLQTAAAIRSGLQDSDFRINPSKGQIIKNEKFVVQIANVADFPALGGQDVQSQVARVLVRAGQPFLPHYHRAGTETLNALAGVFRVSFLFEGLSPRNVTNILRPGD 132          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A2V3IBT1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBT1_9FLOR)

HSP 1 Score: 120 bits (302), Expect = 6.520e-31
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 0
Query:   24 PSFGTQTNGAIRGQLADNDFRIRPEHGVIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNP 121
            P F +     IR  L D+DFRI P  G IIN   F V+IA + +FPAL GQDVQ+QIVRV ++A QPFIPHYHPRG E LNAL G FR++FL EGL+P
Sbjct:  136 PQFRSAIRPGIRSGLQDSDFRINPSKGQIINT-GFTVQIANVADFPALGGQDVQSQIVRVLVRAGQPFIPHYHPRGTETLNALAGVFRVSFLSEGLSP 232          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A1X6P019_PORUM (Cupin type-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P019_PORUM)

HSP 1 Score: 81.6 bits (200), Expect = 1.510e-15
Identity = 51/169 (30.18%), Postives = 76/169 (44.97%), Query Frame = 0
Query:   16 ITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHGVIINNENFRVRIAE---------------LGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLVPVN 169
            + TAL +    G  T+  +     D+ F          + E+F V IA+               L N        V +   R TL+     + H HP   E L ++ GT  + F+     PR+V +++     TVFP+GLIH   CIS+  CEF+S FN+ DPG+V V+
Sbjct:   16 LATALLAATPAGAITSENLARLRQDSQFTTEENLRANFDAEDFSVAIADITPTTTPQGAIVSGGLENLAVFGLSSVDSSFTRFTLQPGAHNLAHTHPTASETLFSISGTMDVFFVEANETPRLVQSVLGPESVTVFPEGLIHGERCISDEPCEFISFFNTGDPGVVTVS 184          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A1X6P0A0_PORUM (Cupin type-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0A0_PORUM)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-14
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 0
Query:   65 LGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLVPVN 169
            L N        V +   R TL+     + H HP   E L ++ GT  + F+     PR+V +++     TVFP+GLIH   CIS+  CEF+S FN+ DPG+V V+
Sbjct:  153 LENLAVFGLSSVDSSFTRFTLQPGAHNLAHTHPTASETLFSISGTMDVFFVEANETPRLVQSVLGPESVTVFPEGLIHGERCISDEPCEFISFFNTGDPGVVTVS 257          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A1X6P0D4_PORUM (Cupin type-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0D4_PORUM)

HSP 1 Score: 77.0 bits (188), Expect = 5.720e-14
Identity = 38/105 (36.19%), Postives = 55/105 (52.38%), Query Frame = 0
Query:   65 LGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLVPVN 169
            L N        V +   R TL+     + H HP   E L ++ GT  + F+     PR+V +++     TVFP+ LIH   CIS+  CEF+S FN+ DPG+V V+
Sbjct:   79 LENLAVFGLSSVDSAFTRFTLQPGAHNLAHTHPTASETLFSISGTMDVFFVEANETPRLVQSVLGPESVTVFPESLIHGERCISDEPCEFISFFNTGDPGVVTVS 183          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A6P5GQ16_ANACO (Germin-like protein n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GQ16_ANACO)

HSP 1 Score: 63.9 bits (154), Expect = 2.500e-9
Identity = 36/113 (31.86%), Postives = 50/113 (44.25%), Query Frame = 0
Query:   54 NNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLV 166
            N   F V IA +   P L    +   I R+         PH HPRG E L  + GT    F+    N  +   I+H G+ TVFP G+IH  + I +     +   NS +PG +
Sbjct:   69 NKFGFNVTIANVMTLPGL--NTLGVSIARIDYAPHGVVPPHTHPRGTEFLTVIEGTLIAGFVTSNPNNTLYQQILHPGDVTVFPIGMIHFQLNIGKGPAVAIVGLNSQNPGFI 179          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A0G4EKJ2_VITBC (Cupin type-1 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EKJ2_VITBC)

HSP 1 Score: 63.5 bits (153), Expect = 5.670e-9
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 0
Query:   60 VRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGT-FRITFLFE-GLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLVPV 168
            VR+ EL   P+L G+ +    V   L+      P  HPR  E++  ++G    + F+ E G +PR++ N +  G+S + P+GL+H          EF+STFNS DPG++ V
Sbjct:   59 VRVQEL---PSLKGESISQ--VHYVLEPCGLNSPQLHPRAAEIVYVIKGDELEMGFVEENGPSPRVINNTLKAGQSMLVPEGLLHWQYNRGCKPVEFISTFNSEDPGVLTV 164          
BLAST of Gcaud2224.t1 vs. uniprot
Match: A0A199V3K1_ANACO (Putative germin-like protein 2-1 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199V3K1_ANACO)

HSP 1 Score: 63.9 bits (154), Expect = 8.770e-9
Identity = 36/113 (31.86%), Postives = 50/113 (44.25%), Query Frame = 0
Query:   54 NNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGVEVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISESDCEFLSTFNSADPGLV 166
            N   F V IA +   P L    +   I R+         PH HPRG E L  + GT    F+    N  +   I+H G+ TVFP G+IH  + I +     +   NS +PG +
Sbjct:  457 NKFGFNVTIANVMTLPGL--NTLGVSIARIDYAPHGVVPPHTHPRGTEFLTVIEGTLIAGFVTSNPNNTLYQQILHPGDVTVFPIGMIHFQLNIGKGPAVAIVGLNSQNPGFI 567          
The following BLAST results are available for this feature:
BLAST of Gcaud2224.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2V3IWG7_9FLOR2.230e-7163.53Spherulin-1B n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
A0A2V3IXN5_9FLOR6.370e-7164.12Putative germin-like protein 2-3 n=1 Tax=Gracilari... [more]
A0A2V3IBZ5_9FLOR8.770e-4456.82Cupin type-1 domain-containing protein n=1 Tax=Gra... [more]
A0A2V3IBT1_9FLOR6.520e-3160.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P019_PORUM1.510e-1530.18Cupin type-1 domain-containing protein n=1 Tax=Por... [more]
A0A1X6P0A0_PORUM1.180e-1437.14Cupin type-1 domain-containing protein n=1 Tax=Por... [more]
A0A1X6P0D4_PORUM5.720e-1436.19Cupin type-1 domain-containing protein n=1 Tax=Por... [more]
A0A6P5GQ16_ANACO2.500e-931.86Germin-like protein n=1 Tax=Ananas comosus TaxID=4... [more]
A0A0G4EKJ2_VITBC5.670e-934.23Cupin type-1 domain-containing protein n=1 Tax=Vit... [more]
A0A199V3K1_ANACO8.770e-931.86Putative germin-like protein 2-1 n=1 Tax=Ananas co... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001929GerminPRINTSPR00325GERMINcoord: 94..114
score: 40.42
coord: 159..170
score: 26.74
coord: 126..146
score: 35.88
IPR006045Cupin 1SMARTSM00835Cupin_1_3coord: 49..167
e-value: 4.1E-4
score: 15.5
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 49..166
e-value: 4.1E-11
score: 42.7
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 29..170
e-value: 2.1E-24
score: 88.1
NoneNo IPR availablePANTHERPTHR31238GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3coord: 55..168
NoneNo IPR availablePANTHERPTHR31238:SF42GERMIN-LIKE PROTEIN 9-2-RELATEDcoord: 55..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 43..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_746_length_18753_cov_4.651538contigNODE_746_length_18753_cov_4.651538:11756..12268 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2224.t1Gcaud2224.t1Gracilaria caudata M_176_S67 malemRNANODE_746_length_18753_cov_4.651538 11756..12268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2224.t1 ID=Gcaud2224.t1|Name=Gcaud2224.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MNKTITASILILLPFITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHG
VIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGV
EVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISES
DCEFLSTFNSADPGLVPVNL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001929Germin
IPR006045Cupin_1
IPR014710RmlC-like_jellyroll
IPR011051RmlC_Cupin_sf