Gcaud2206.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2206.t1
Unique NameGcaud2206.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length154
Homology
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A2V3J321_9FLOR (30S ribosomal protein S17, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J321_9FLOR)

HSP 1 Score: 304 bits (779), Expect = 1.100e-104
Identity = 148/153 (96.73%), Postives = 151/153 (98.69%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMFTGL 153
            MADILHDKSFPKQGAVSLVGRT RKQGRW++NVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKM+KTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTA AEDGKKMFTGL
Sbjct:    1 MADILHDKSFPKQGAVSLVGRTGRKQGRWFRNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMRKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAAAEDGKKMFTGL 153          
BLAST of Gcaud2206.t1 vs. uniprot
Match: R7Q4Z1_CHOCR (30S ribosomal protein S17, chloroplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Z1_CHOCR)

HSP 1 Score: 284 bits (726), Expect = 1.330e-96
Identity = 132/153 (86.27%), Postives = 145/153 (94.77%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMFTGL 153
            MADILH+K+FPKQGAVSLVGR  RK GRW++NVGLGIKTPREAIEGTY+DKKCPFTGNVSIRGRLFRGV++STKMKKTVI+R+DYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQ RP SKTKRFAVLK++R AP+ DGKK+F GL
Sbjct:    1 MADILHEKAFPKQGAVSLVGRVGRKNGRWFRNVGLGIKTPREAIEGTYVDKKCPFTGNVSIRGRLFRGVVVSTKMKKTVIVRRDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQNRPTSKTKRFAVLKLDRAAPSADGKKIFAGL 153          
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A5J4YKR3_PORPP (30S ribosomal protein S17, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKR3_PORPP)

HSP 1 Score: 242 bits (618), Expect = 3.860e-80
Identity = 112/153 (73.20%), Postives = 131/153 (85.62%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMFTGL 153
            MADI  +K+F KQ AVSL G+  R +GRWYKNVGLGIKTP EAI G ++DKKCPFTGNVS+RG L RGV+ISTKMK+T++IR+DYLHW++KYKRFEKRHRN+PAH SP FR+REGDQVTIGQ RPLSKT  F VLKI+R AP  DGKK+FTG+
Sbjct:    1 MADIQTEKAFQKQEAVSLAGKVGRTKGRWYKNVGLGIKTPSEAINGDFVDKKCPFTGNVSVRGTLMRGVVISTKMKRTIVIRRDYLHWVKKYKRFEKRHRNVPAHCSPAFRIREGDQVTIGQCRPLSKTVSFNVLKIDRIAPDADGKKVFTGM 153          
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A1X6NLK9_PORUM (30S ribosomal protein S17, chloroplastic n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLK9_PORUM)

HSP 1 Score: 241 bits (615), Expect = 1.100e-79
Identity = 112/153 (73.20%), Postives = 134/153 (87.58%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMFTGL 153
            MAD  H+K+F KQGAVSL G  S+K+ RWYK+VGLGIKTP EAI+G Y+DKKCPFTG+VSIRGRLFRGVI+STKM++TV+IR++YLHWI+KYKRFEKRHRN+PAH SPCFR++EGDQVTIGQ RPLSKT RF VLKI+R A   + KK F+G+
Sbjct:    1 MADFQHEKAFQKQGAVSLNGGVSKKKDRWYKSVGLGIKTPAEAIDGDYVDKKCPFTGDVSIRGRLFRGVIVSTKMRRTVVIRREYLHWIKKYKRFEKRHRNMPAHCSPCFRVKEGDQVTIGQCRPLSKTVRFNVLKIDRIAAVVESKKAFSGI 153          
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A7S1TM77_9RHOD (30S ribosomal protein S17, chloroplastic n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TM77_9RHOD)

HSP 1 Score: 241 bits (614), Expect = 1.570e-79
Identity = 111/152 (73.03%), Postives = 131/152 (86.18%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMFTG 152
            MADI  +K+F KQ AVSLVG+  +++GRWYKN+GLGIKTP EAI G Y+DKKCPFTGNVSIRG + RGV+ISTKMK+T++IR+DYLHW+RKYKRFEKRHRNIPAH SP FR+REGDQVTIGQ RPL+KT  F VLKI+R AP   GKK+F+G
Sbjct:    1 MADIQTEKAFQKQDAVSLVGKVGQRKGRWYKNIGLGIKTPNEAIVGDYVDKKCPFTGNVSIRGSILRGVVISTKMKRTIVIRRDYLHWVRKYKRFEKRHRNIPAHCSPAFRVREGDQVTIGQCRPLAKTVSFNVLKIDRVAPESSGKKVFSG 152          
BLAST of Gcaud2206.t1 vs. uniprot
Match: M2XRC2_GALSU (30S ribosomal protein S17, chloroplastic n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRC2_GALSU)

HSP 1 Score: 227 bits (579), Expect = 3.730e-74
Identity = 107/156 (68.59%), Postives = 131/156 (83.97%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSL--VGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPA-EDGKKMFTGL 153
            MAD   +++F KQ A+SL  +   S+K  RWYKN+GLGIKTP+EAIEG YIDKKCPFTGNVSIRGR+ RG ++STKMK+TVI+R+DYLHW+ KYKRFEKRHRNIPAH SPCFR+REGD VTIG+ RPLSKT RF +L+I+R APA E GKK+++ +
Sbjct:    1 MADPQTERAFQKQDAISLKQIAGVSKKNARWYKNIGLGIKTPKEAIEGDYIDKKCPFTGNVSIRGRILRGTVVSTKMKRTVIVRRDYLHWVSKYKRFEKRHRNIPAHCSPCFRVREGDLVTIGECRPLSKTVRFNILRIDRAAPASEAGKKIYSSI 156          
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A7J7INF0_9RHOD (30S ribosomal protein S17, chloroplastic n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7INF0_9RHOD)

HSP 1 Score: 221 bits (563), Expect = 1.090e-71
Identity = 107/158 (67.72%), Postives = 129/158 (81.65%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRTSRKQG---RWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAED--GKKMFTGL 153
            M ++  +++F KQ AVSL G   R  G   RWYK++GLGIKTPREAIEGTYIDKKCPFT NVSIRGR+ RGV++STKM +TVI+R+DYLHW+ KY+R+E+RHRNIP HASPCFRL EGD VTIGQ RPLSKT RF V++++R A  +D  GKKMFTGL
Sbjct:    1 MTEVQTERAFQKQEAVSLNGPAVRFHGARKRWYKSIGLGIKTPREAIEGTYIDKKCPFTSNVSIRGRVLRGVVVSTKMTRTVIVRRDYLHWVPKYRRYERRHRNIPCHASPCFRLHEGDIVTIGQCRPLSKTVRFNVIRVDRAAGGKDKAGKKMFTGL 158          
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A7S3KK56_EUPCR (Hypothetical protein n=2 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KK56_EUPCR)

HSP 1 Score: 195 bits (496), Expect = 2.230e-61
Identity = 90/149 (60.40%), Postives = 120/149 (80.54%), Query Frame = 0
Query:    6 HDKSFPKQGAVSL----VGRTSRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF 150
            H+K+F KQ A+ +    +G+T +++ R+Y++VGLG KTP EAIEGTY+DKKCPFTGNVSIRGR+  GV+ STKMK+T+++R+DYLH++ KY R+EKRH+NI AH SPCFR+ +GD VT+GQ RPLSKT RF V++I+R A    GKK F
Sbjct:   18 HEKAFQKQDAIFVNAKTLGKTKKRESRYYRSVGLGFKTPLEAIEGTYVDKKCPFTGNVSIRGRILTGVVASTKMKRTIVVRRDYLHYVNKYHRYEKRHKNISAHCSPCFRVEQGDIVTVGQCRPLSKTVRFNVVRIDRKA---GGKKQF 163          
BLAST of Gcaud2206.t1 vs. uniprot
Match: A0A2D4CKZ9_PYTIN (40S ribosomal protein S11 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKZ9_PYTIN)

HSP 1 Score: 192 bits (487), Expect = 4.440e-60
Identity = 87/147 (59.18%), Postives = 118/147 (80.27%), Query Frame = 0
Query:    4 ILHDKSFPKQGAVSLVGRT---SRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGK 147
            ++++++F KQ AV L  +     + Q RWYK++GLG KTP+ AIEG Y+DKKCPFTG++SIRGR+ +GV++STKMK+T+I+R+DYLH++RKYKRFEKRH+N+ AH SPCFR++EGD VTIGQ RPL+KT RF VL +    PA + K
Sbjct:    7 VMNERAFQKQDAVFLASKKFAGKKSQPRWYKDIGLGFKTPKTAIEGHYVDKKCPFTGDISIRGRILKGVVLSTKMKRTIIVRRDYLHFVRKYKRFEKRHKNVAAHVSPCFRVKEGDVVTIGQCRPLAKTVRFNVLDVE---PASETK 150          
BLAST of Gcaud2206.t1 vs. uniprot
Match: C5KXR1_PERM5 (40S ribosomal protein S11, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KXR1_PERM5)

HSP 1 Score: 190 bits (483), Expect = 1.480e-59
Identity = 94/153 (61.44%), Postives = 115/153 (75.16%), Query Frame = 0
Query:    1 MADILHDKSFPKQGAVSLVGRT---SRKQGRWYKNVGLGIKTPREAIEGTYIDKKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHRNIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF 150
            MAD  H+K+F KQ AV L  +    S+K  RW+KNVGLG +TP+EAIEGTYIDKKCPFTGNVSIRGR+FRG++IS KM++T+++R+ YLH+I+KY RFEKRH N   H SPCF  +EGD VT GQ RPLSKT RF VLK+ +       KK F
Sbjct:    1 MAD-QHEKAFQKQDAVFLGNKRALKSKKGLRWFKNVGLGFQTPKEAIEGTYIDKKCPFTGNVSIRGRIFRGMVISNKMERTIVVRRHYLHYIKKYNRFEKRHSNTAVHCSPCFEAKEGDIVTCGQCRPLSKTVRFNVLKLEKNQIFGTAKKQF 152          
The following BLAST results are available for this feature:
BLAST of Gcaud2206.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J321_9FLOR1.100e-10496.7330S ribosomal protein S17, chloroplastic n=1 Tax=G... [more]
R7Q4Z1_CHOCR1.330e-9686.2730S ribosomal protein S17, chloroplastic n=1 Tax=C... [more]
A0A5J4YKR3_PORPP3.860e-8073.2030S ribosomal protein S17, chloroplastic n=1 Tax=P... [more]
A0A1X6NLK9_PORUM1.100e-7973.2030S ribosomal protein S17, chloroplastic n=1 Tax=P... [more]
A0A7S1TM77_9RHOD1.570e-7973.0330S ribosomal protein S17, chloroplastic n=1 Tax=E... [more]
M2XRC2_GALSU3.730e-7468.5930S ribosomal protein S17, chloroplastic n=1 Tax=G... [more]
A0A7J7INF0_9RHOD1.090e-7167.7230S ribosomal protein S17, chloroplastic n=2 Tax=C... [more]
A0A7S3KK56_EUPCR2.230e-6160.40Hypothetical protein n=2 Tax=Euplotes crassus TaxI... [more]
A0A2D4CKZ9_PYTIN4.440e-6059.1840S ribosomal protein S11 n=2 Tax=Pythium insidios... [more]
C5KXR1_PERM51.480e-5961.4440S ribosomal protein S11, putative n=1 Tax=Perkin... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 115..125
score: 60.73
coord: 125..132
score: 79.5
coord: 82..105
score: 34.17
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 68..136
e-value: 2.1E-27
score: 95.0
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 19..152
NoneNo IPR availableGENE3D2.40.50.1000coord: 1..151
e-value: 5.8E-68
score: 229.7
NoneNo IPR availablePANTHERPTHR10744:SF37BNAA06G38660D PROTEINcoord: 19..152
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 6..66
e-value: 7.5E-26
score: 90.3
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 34..137
e-value: 5.9E-34
score: 114.1
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 115..127
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 62..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:71487..71948 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2206.t1Gcaud2206.t1Gracilaria caudata M_176_S67 malemRNANODE_19_length_78712_cov_4.326007 71487..71948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2206.t1 ID=Gcaud2206.t1|Name=Gcaud2206.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=154bp
MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYID
KKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHR
NIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF
TGL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR032440Ribosomal_S11_N
IPR028333Ribosomal_S17_arc-typ
IPR019979Ribosomal_S17_CS
IPR012340NA-bd_OB-fold