Gcaud2206.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2206.t1
Unique NameGcaud2206.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:71487..71948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702733.1
Preferred nameRPS11
PFAMsRibosomal_S17,Ribosomal_S17_N
Max annot lvl2759|Eukaryota
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.08e-73
EggNOG OGsCOG0186@1|root,KOG1728@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2206Gcaud2206Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 71487..71948 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2206.t1.stop1Gcaud2206.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 71487..71489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2206.t1.CDS1Gcaud2206.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 71487..71948 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2206.t1.exon1Gcaud2206.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 71487..71948 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2206.t1.start1Gcaud2206.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 71946..71948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2206.t1Gcaud2206.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 71487..71948 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2206.t1 ID=Gcaud2206.t1|Name=Gcaud2206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=154bp
MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYID
KKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHR
NIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF
TGL*
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spliced messenger RNA

>Gcaud2206.t1 ID=Gcaud2206.t1|Name=Gcaud2206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:71487..71948- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATATCCTTCACGACAAGAGTTTCCCGAAGCAGGGCGCCGTTTC
GCTGGTCGGCAGAACGAGCCGGAAGCAAGGGCGGTGGTACAAAAACGTCG
GCTTGGGTATCAAGACCCCCCGCGAGGCCATCGAGGGAACCTACATCGAC
AAGAAGTGCCCCTTCACCGGCAATGTTTCCATCCGTGGTAGGCTTTTCCG
AGGCGTGATTATCTCCACCAAGATGAAGAAGACTGTAATCATTCGCAAGG
ATTATCTGCATTGGATCCGCAAGTACAAGCGTTTCGAGAAGCGTCATCGA
AATATTCCTGCGCATGCGTCGCCCTGTTTCCGTCTGCGCGAGGGAGATCA
GGTCACCATTGGACAGACGCGCCCACTTTCGAAGACCAAGCGCTTTGCAG
TTCTCAAGATCAATCGCACTGCACCCGCAGAGGATGGCAAGAAAATGTTC
ACAGGCCTGTAA
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protein sequence of Gcaud2206.t1

>Gcaud2206.t1 ID=Gcaud2206.t1|Name=Gcaud2206.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=154bp
MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYID
KKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHR
NIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF
TGL*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:71487..71948-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2206.t1 ID=Gcaud2206.t1|Name=Gcaud2206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:71487..71948- (Gracilaria caudata M_176_S67 male)
ATGGCTGATATCCTTCACGACAAGAGTTTCCCGAAGCAGGGCGCCGTTTC
GCTGGTCGGCAGAACGAGCCGGAAGCAAGGGCGGTGGTACAAAAACGTCG
GCTTGGGTATCAAGACCCCCCGCGAGGCCATCGAGGGAACCTACATCGAC
AAGAAGTGCCCCTTCACCGGCAATGTTTCCATCCGTGGTAGGCTTTTCCG
AGGCGTGATTATCTCCACCAAGATGAAGAAGACTGTAATCATTCGCAAGG
ATTATCTGCATTGGATCCGCAAGTACAAGCGTTTCGAGAAGCGTCATCGA
AATATTCCTGCGCATGCGTCGCCCTGTTTCCGTCTGCGCGAGGGAGATCA
GGTCACCATTGGACAGACGCGCCCACTTTCGAAGACCAAGCGCTTTGCAG
TTCTCAAGATCAATCGCACTGCACCCGCAGAGGATGGCAAGAAAATGTTC
ACAGGCCTGTAA
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:71487..71948-

>Gcaud2206.t1 ID=Gcaud2206.t1|Name=Gcaud2206.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=462bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:71487..71948- (Gracilaria caudata M_176_S67 male)
ATGGCTGATATCCTTCACGACAAGAGTTTCCCGAAGCAGGGCGCCGTTTC
GCTGGTCGGCAGAACGAGCCGGAAGCAAGGGCGGTGGTACAAAAACGTCG
GCTTGGGTATCAAGACCCCCCGCGAGGCCATCGAGGGAACCTACATCGAC
AAGAAGTGCCCCTTCACCGGCAATGTTTCCATCCGTGGTAGGCTTTTCCG
AGGCGTGATTATCTCCACCAAGATGAAGAAGACTGTAATCATTCGCAAGG
ATTATCTGCATTGGATCCGCAAGTACAAGCGTTTCGAGAAGCGTCATCGA
AATATTCCTGCGCATGCGTCGCCCTGTTTCCGTCTGCGCGAGGGAGATCA
GGTCACCATTGGACAGACGCGCCCACTTTCGAAGACCAAGCGCTTTGCAG
TTCTCAAGATCAATCGCACTGCACCCGCAGAGGATGGCAAGAAAATGTTC
ACAGGCCTGTAA
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