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Homology
BLAST of Gcaud2197.t1 vs. uniprot
Match: A0A2V3J366_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J366_9FLOR) HSP 1 Score: 94.4 bits (233), Expect = 4.500e-21 Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 0
Query: 1 MAHTTSNQRIAISSLLNDPIRDPVRPPQPSSSQVKLYECELCHKRFTQKADVRKHKKTVHEKARD 65
MA SNQRIAI SLLNDPIR+P RP S+ Q+KL+ECE C KRFTQ+ADVRKHKKTVHEKARD
Sbjct: 69 MAVANSNQRIAIPSLLNDPIREPGRPSS-STPQIKLFECEQCFKRFTQRADVRKHKKTVHEKARD 132
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 95..118
e-value: 0.093
score: 21.8
coord: 66..89
e-value: 0.0013
score: 28.0
coord: 37..60
e-value: 0.0034
score: 26.6
coord: 124..147
e-value: 0.022
score: 23.9 |
| IPR013087 | Zinc finger C2H2-type | PFAM | PF00096 | zf-C2H2 | coord: 96..118
e-value: 0.0096
score: 16.3
coord: 124..147
e-value: 2.3E-4
score: 21.5
coord: 37..60
e-value: 7.3E-4
score: 19.9
coord: 66..89
e-value: 2.7E-4
score: 21.2 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 126..147 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 97..118 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 68..89 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 39..60 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 66..94
score: 12.632284 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 95..123
score: 12.964813 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 37..65
score: 12.507586 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 124..151
score: 11.094336 |
| None | No IPR available | GENE3D | 3.30.160.60 | Classic Zinc Finger | coord: 91..119
e-value: 1.2E-5
score: 27.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | Classic Zinc Finger | coord: 34..61
e-value: 8.1E-7
score: 31.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | Classic Zinc Finger | coord: 120..151
e-value: 1.9E-7
score: 32.6
coord: 62..90
e-value: 4.0E-8
score: 34.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..29 |
| None | No IPR available | PANTHER | PTHR24388:SF50 | GROWTH FACTOR-INDEPENDENT 1A TRANSCRIPTION REPRESSOR B-RELATED | coord: 32..145 |
| None | No IPR available | PANTHER | PTHR24388 | ZINC FINGER PROTEIN | coord: 32..145 |
| IPR036236 | Zinc finger C2H2 superfamily | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 75..133 |
| IPR036236 | Zinc finger C2H2 superfamily | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 35..86 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gcaud2197.t1 ID=Gcaud2197.t1|Name=Gcaud2197.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=152bp
MAHTTSNQRIAISSLLNDPIRDPVRPPQPSSSQVKLYECELCHKRFTQKA
DVRKHKKTVHEKARDYHCDECTLSFGERGNLNKHIRSIHRKERNFLCNQC
PASFPFRNGLTEHQRMKHSDDRPYECTRCPASFKKKSHLQRHTTVVHKVS
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Annotated Terms
The following terms have been associated with this polypeptide:
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