Gcaud2185.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2185.t1
Unique NameGcaud2185.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length777
Homology
BLAST of Gcaud2185.t1 vs. uniprot
Match: A0A2V3IYU1_9FLOR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYU1_9FLOR)

HSP 1 Score: 986 bits (2550), Expect = 0.000e+0
Identity = 566/776 (72.94%), Postives = 630/776 (81.19%), Query Frame = 0
Query:    1 MRGSTANMPSEEALREMMRAAXXXXXXXXXXXXXXXXXXTTSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVDGGVRWKKIQAVAREIAAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYDSLNLTTVAPHRSTQPAAAAQQVTPTVTDSRPXXXXXXXXQLQPAPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGKSKRXXXXXXXXXXXXXXXXXXXXXSGKRPRPVFPPIPEETKEPTSVLAVEKAYHALVAPKWTGEVSEAEPLLIPIELYVTIGEKTLHMFTQWDVNERHLAPENVADNIRRARGLPEEFVSPVAFQIRRSLFEAGVICPPPPDLLEAEHRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANISPEHAPQVARALRAQLVRAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVGSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKAAEERLRHELEIVRRIELAELARRNADIERARKEVDEEAVQVYQTRNLDFRPYLKLRIARNESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHNILFSRISKRRRSGVRKSHDEKSTGRTMEKSEVHVTKKQKTEPTVQSSQSLPPDEDRKVMLRLRVRNPYNTSQKKTPAPKRRR 776
            MRG T N PSEEALREMMRA XXXXXXXXXXXXXXXXXX TSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPL PV+GGVRW+KIQAVAREIAAKWTHPPGSSQYET TLH+VRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLA+FVEKFAEG  DKFLEEARSGTRPIGRPAFYDSLNL TVA HRS Q +       P VTDS  XXXXXXXX L      XXXXXXXXXXXX                                        S G++K+                     SGKRPRPVFPPIPEETKEPTSVLAVEKAYHAL APKWTGE S AEPLLIPIEL+VT+G +TLH + QWDVNER L+PE VAD+IRRARGLPE+FV PVA QIRRSL++AGV+CPPPPDL EAE+RRLIKIVVELKDGDTV+VLRDEFEWDLG GS NSPELFAQLLCTDANI  +HA  VAR LRAQLVRAHAIA+GDEET+KLA  G+  DD L   LP VGS+++KCT EDIRV+DREENELAIRN+FV+PLLD+IP E+ERRK ERV+KAAEE+LR ELE +RR+ELAELA+RNA++E+ARK+V+EEA +VYQTRNLDFRPYLKLR+AR ESPSLWMPAAFDRRRRKQLTFPMTQPSRKT+GH+  FSRISKRRRSGVRK  +++STGR+  K+E H  KKQKTEP   + +S+ P+E ++VM+R+R+++P   +Q K PAPK+RR
Sbjct:    1 MRGPTVNAPSEEALREMMRAXXXXXXXXXXXXXXXXXXXXTSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPLQPVEGGVRWQKIQAVAREIAAKWTHPPGSSQYETDTLHHVRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAVFVEKFAEGQYDKFLEEARSGTRPIGRPAFYDSLNLATVAAHRSNQGSLPPPNAPP-VTDSXXXXXXXXXXXLXXX---XXXXXXXXXXXXKLTTSPTSRSPAKSGLSDGEKGTDEEKPNGLEKSNDQEQTSAGRNKKLEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSVLAVEKAYHALAAPKWTGEFSNAEPLLIPIELFVTVGSRTLHTYAQWDVNERQLSPEKVADHIRRARGLPEDFVKPVAHQIRRSLYDAGVVCPPPPDLPEAENRRLIKIVVELKDGDTVNVLRDEFEWDLGAGSLNSPELFAQLLCTDANIPQKHAAAVARTLRAQLVRAHAIAYGDEETRKLAENGMAADDTLRVKLPSVGSSMVKCTVEDIRVKDREENELAIRNVFVKPLLDNIPDEAERRKEERVQKAAEEKLRRELEAIRRVELAELAKRNAEVEQARKQVEEEATKVYQTRNLDFRPYLKLRVARGESPSLWMPAAFDRRRRKQLTFPMTQPSRKTTGHSFTFSRISKRRRSGVRKDPEDRSTGRSQPKTEGHPVKKQKTEPMPVAGKSISPEEYKRVMIRIRLKDPV--TQNKAPAPKKRR 770          
BLAST of Gcaud2185.t1 vs. uniprot
Match: R7QG43_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG43_CHOCR)

HSP 1 Score: 242 bits (618), Expect = 1.150e-69
Identity = 158/363 (43.53%), Postives = 212/363 (58.40%), Query Frame = 0
Query:  428 QIRRSLFEAGVIC--PPPPDLLEAEHRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANISPEHAPQVARALRAQLVRAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVGSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKAAEERLRHELEIVRRIELAELARRNADIERARKEVDEEAVQVYQTRNLDFRPYLKLRIARNESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHNILFSRISKRRRSGVRKSHDEKSTGRTMEKSEVHVTKKQKTEPTVQSSQSLPPD------------EDRKVMLRLRVRNPYNTSQKKTPAPKRRR 776
            QIRR+LF AG++C  PP P     E+RRLI+I VEL  G     L DEFEWDLG GS NSPELFA  LC+DA I  +HA  VARA+R +LV AHAIA+GDEETK++A   LP+DDPL + LP V S   +    D     RE NE  I + ++ PL+D++  ESERR  E  +   +ER R E E  R +E  + A R A IE++  EV++ A+++ + R LDFRPYL L+IAR E    W PA FDR+RR+Q +FPMT  SR  +       R +++RRS  R+  D +S  R+   +         T P  + ++++  D            +D  V +RLRVR    TS +    PK+RR
Sbjct:    2 QIRRALFSAGIVCAAPPAPPGANEENRRLIRIDVELGGGPGSQNLCDEFEWDLGIGSMNSPELFAHCLCSDAGIPQKHAATVARAIREKLVLAHAIAYGDEETKRMALSVLPEDDPLRNPLPKVFSVFSRDV--DHSAASREANEAEINDTYIAPLVDAVVAESERRSTECKRNMEDERKRKEFEATRAVEEVDEAERQAKIEKSLLEVEQAAIELQKERGLDFRPYLALKIARGERLGTWTPAVFDRKRRRQTSFPMTAVSRLHTAVIPAGPRAARKRRSTHRR--DRRSESRSQLSTSA-------TTPVKRPAEAMESDVKGELKRVVVNVKDLAVCVRLRVRPARITSNRNGSNPKKRR 353          
BLAST of Gcaud2185.t1 vs. uniprot
Match: UPI000C6EDD9B (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EDD9B)

HSP 1 Score: 65.9 bits (159), Expect = 1.720e-7
Identity = 63/221 (28.51%), Postives = 100/221 (45.25%), Query Frame = 0
Query:  362 PKWTGEVSEAEPLLIPIELYVTI-GEKTLHMFTQWDVNERHLAPENVADNIRRARGLPEEFVSPVAFQIRRSLFEAGVICPPPPDLLE--AEHRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANISPEHAPQVARALRAQLV---RAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVGSALIKCTAEDIRVRDREENELAIRNL 576
            P  T E +    +L+PI L + I G K    FT W+ NE  + PE  A+ +     LP     P   Q  R   EA     P  +LLE  A+ R ++K+ + + +   V    D+FEWD+     NSPELFA  LC++  +  E    +A ++R QL    R +A +     T ++      + D     L  +  A +     + ++RD++ N   +R L
Sbjct:  273 PSVTHENASQSEVLVPIRLDMEIEGHKLRDTFT-WNKNESLITPEQFAEVLCDDLDLPPLSFVPAISQSIRQQIEAF----PTDNLLEDQADQRVILKLNIHVGNISLV----DQFEWDMSE-KENSPELFANKLCSELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPTVEIPFRNQAEADQWCPFLETLTDAEM-----EKKIRDQDRNTRRMRRL 478          
BLAST of Gcaud2185.t1 vs. uniprot
Match: A0A087U1R5_STEMI (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (Fragment) n=5 Tax=Entelegynae TaxID=74971 RepID=A0A087U1R5_STEMI)

HSP 1 Score: 60.8 bits (146), Expect = 5.110e-6
Identity = 60/222 (27.03%), Postives = 101/222 (45.50%), Query Frame = 0
Query:  362 PKWTGEVSEAEPLLIPIELYVTI-GEKTLHMFTQWDVNERHLAPENVADNIRRARGLPE-EFVSPVAFQIRRSLFEAGVICPPPPDLLE--AEHRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANISPEHAPQVARALRAQLV---RAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVGSALIKCTAEDIRVRDREENELAIRNL 576
            P    E S    +L+P+ L + I G K    FT W+ NE  + PE  A+ +     LP   FV  +A  IR+ +        P  +LL+  A+ R ++K+ + + +   V    D+FEWD+     NSPE+FA  LC++  +  E    +A ++R QL    R +A +     T  +      + D     L  +  A +     + ++RD++ N   +R L
Sbjct:  190 PSVIHENSTQTEVLVPVRLDMEIEGHKLRDTFT-WNKNESLITPEQFAEALCDDLDLPPLSFVPAIAQSIRQQIDAF-----PTDNLLDEQADQRVILKLNIHVGNISLV----DQFEWDMSE-KENSPEVFANKLCSELGLGGEFCTAIAYSIRGQLSWHQRTYAFSEAPLPTVDIPYRNQSEADQWCPFLETLTDAEM-----EKKIRDQDRNTRRMRRL 395          
The following BLAST results are available for this feature:
BLAST of Gcaud2185.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IYU1_9FLOR0.000e+072.94SWI/SNF-related matrix-associated actin-dependent ... [more]
R7QG43_CHOCR1.150e-6943.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI000C6EDD9B1.720e-728.51SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A087U1R5_STEMI5.110e-627.03SWI/SNF-related matrix-associated actin-dependent ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 591..611
NoneNo IPR availableCOILSCoilCoilcoord: 617..640
NoneNo IPR availableCOILSCoilCoilcoord: 306..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 683..697
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 683..776
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 710..732
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..321
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 282..644
NoneNo IPR availablePANTHERPTHR10019SNF5coord: 282..644
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..776
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..37
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 119..174
e-value: 1.3E-5
score: 26.7
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 449..520
e-value: 4.2E-9
score: 36.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:10450..12780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2185.t1Gcaud2185.t1Gracilaria caudata M_176_S67 malemRNANODE_19_length_78712_cov_4.326007 10450..12780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2185.t1 ID=Gcaud2185.t1|Name=Gcaud2185.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=777bp
MRGSTANMPSEEALREMMRAAAATASAAAGDASVAAAAVTTSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVDGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTTVAPHRSTQPAAAAQQVTPTVTDSRPPVPPPPPPQLQPAPWTRPQ
PPPPPSLPPSTSVSPTSKPAKTGGADAGKGAESEKSADQEKPSEQDHATS
TGKSKRAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSVL
AVEKAYHALVAPKWTGEVSEAEPLLIPIELYVTIGEKTLHMFTQWDVNER
HLAPENVADNIRRARGLPEEFVSPVAFQIRRSLFEAGVICPPPPDLLEAE
HRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANIS
PEHAPQVARALRAQLVRAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVG
SALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKA
AEERLRHELEIVRRIELAELARRNADIERARKEVDEEAVQVYQTRNLDFR
PYLKLRIARNESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHNILFSRI
SKRRRSGVRKSHDEKSTGRTMEKSEVHVTKKQKTEPTVQSSQSLPPDEDR
KVMLRLRVRNPYNTSQKKTPAPKRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010982Lambda_DNA-bd_dom_sf
IPR006939SNF5