Gcaud2129.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2129.t1
Unique NameGcaud2129.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length256
Homology
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A2V3IH59_9FLOR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH59_9FLOR)

HSP 1 Score: 266 bits (681), Expect = 1.200e-85
Identity = 138/250 (55.20%), Postives = 176/250 (70.40%), Query Frame = 0
Query:    3 DASRERISYPTGKAKSETRVFVDSFLRPEEVVQLPQEERKHLRVRRFRNGDRLVLFNSLGQTAAAVYQNEAAIILELQGSEVRDKS-FSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSMRDSTPSIAVVDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLLF 251
            D+S + ++YPTGK KS+TRVF+D   R  EV+ LPQEE KHLR  RF+NGD  VLFN  G +A A  QN+ A++LE +      K+ FS LIA+P++ SR+D +VEKLTELG D I FM+TKRTI   PS NKL+RW RIAI+ASKQS+RD  P IA +DF +AL     HPLPFLLC  G  LL+ S    + RE + L++VGPEGGF+  E  +L   GA+ VSLG NRLR ETAA+ S A++SQ+L+
Sbjct:   52 DSSSDSLAYPTGKRKSDTRVFLDIGFRTGEVISLPQEEFKHLRALRFKNGDEFVLFNGAGDSATAALQNKTAVVLEARYKTTHLKAQFSALIAVPKTGSRSDSIVEKLTELGADCITFMRTKRTIATMPSANKLERWNRIAIAASKQSLRDVPPEIAAIDFSSALETVVLHPLPFLLCSMGDLLLSSSCQTRIRREKQALVIVGPEGGFEMSEARQLTEAGAIPVSLGSNRLRIETAAIVSVALISQILY 301          
BLAST of Gcaud2129.t1 vs. uniprot
Match: R7QLU6_CHOCR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLU6_CHOCR)

HSP 1 Score: 185 bits (470), Expect = 5.700e-54
Identity = 104/242 (42.98%), Postives = 143/242 (59.09%), Query Frame = 0
Query:   10 SYPTGKAKSETRVFVDSFLRPEEVVQLPQEERKHLRVRRFRNGDRLVLFNSLGQTAAAVYQNEAAI-ILELQGSEVRDKSFSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSMRDSTPSIAVV-DFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQL 249
            SY  GKA S TRVF+     P     LP EE  HLR RR R+G ++ LF+  G  A A   +E+++ +L    +E R KS   +IA+P+SPSRAD +VEKL ELG   + + +T+R I A P+  +L RW R+A++ASKQSMR   P +    ++   L +A++  L  LL   G P+L     D V     + +LVGPEGGF   E +KL   GA+++ LG NRLR ETAA  + AVL Q+
Sbjct:   36 SYTRGKATSSTRVFLSGPFHPGAEYTLPPEEAAHLRARRIRHGSQITLFDGTGAFATATLDSESSVTVLTTTSAEARSKSICAIIALPKSPSRADGIVEKLVELGVHRLVWARTERVIAAAPNQARLARWARLAVAASKQSMRTDVPIVQTTSNWGELLELASQSDLVLLLSAAGTPILGQRCTDAVRAARNIAVLVGPEGGFTDTEEEKLEAVGALKIGLGSNRLRVETAAFTAVAVLMQV 277          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A656D426_9BACT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Candidatus Kryptobacter tengchongensis TaxID=1643429 RepID=A0A656D426_9BACT)

HSP 1 Score: 110 bits (274), Expect = 1.810e-25
Identity = 84/236 (35.59%), Postives = 125/236 (52.97%), Query Frame = 0
Query:   33 VVQLPQEERKHL-RVRRFRNGDRLVLFNSLGQTAAAVYQN------EAAIILELQGSEVRDKSFSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVA----DPSPNKLQRWKRIAISASKQSMRDSTPSIAV-VDFETALAVATRHPLPFLL--CPKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLLFRNR 254
            VV++  EE  HL RV R R G+ + LF+  G+   A   N      +  II E       D   +   AI ++P R ++ +EKLTELGT  I  + T+R I A    D S NK++RWK+I +SA KQS R   P +   VDF++ +   T +    +     + K +L  + L+ ++    +L+  GPEGGF SEEI   +N+G   +SLG  RLR+ETA++    VL Q    ++
Sbjct:   15 VVEIKGEEFHHLARVSRKRVGELIYLFDGGGKIYTAKIVNITREKAKCEIIAEEFMKGEIDVDIAVAQAILKNPERFEFAIEKLTELGTKYIIPLITERVIPAKSLEDISRNKIERWKKIILSACKQSNRALIPKLCEPVDFKSFVTEFTEYDRKVIFHESDEFKRILLYNYLERMKGVNSILVATGPEGGFTSEEIKLAVNSGFDVISLGERRLRSETASIIGVGVLIQFFIASK 250          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A7J7ILD3_9RHOD (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILD3_9RHOD)

HSP 1 Score: 111 bits (277), Expect = 2.380e-25
Identity = 84/257 (32.68%), Postives = 125/257 (48.64%), Query Frame = 0
Query:   34 VQLPQEERKHLRVRRFRNGDRLVLFNSLGQTAAAVYQNEAAIILELQ-------GSEVRDK----SFSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQ--RWKRIAISASKQSMRDS---------------------TPSIAVVDFETALAVATRHPLPFLLC-PKGKPLLTG------SVLDDVER---EGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVL 246
            ++LP  E++H+R RR ++G  + LF+  G+ AA         +  L+        +EV       S S ++A P+S  RADW++EKL ELG      +  +R  V  P   K    RW+ ++I+A+KQS+R +                     +P + + D    ++V     + FLL  P  +  L         VL   ER     +V+ +VGPEGG  S+E D L+  GA+ VSLG  RLRTETAA+A AA L
Sbjct:   58 LELPPNEQQHVRSRRLKDGTMVELFDGSGRLAAGQLACRGRAVEALRWLPTDTGATEVPSMQQVLSVSCVVATPKSTQRADWMIEKLNELGVSGYRHLACRRVEVDAPQIEKRAAVRWQHVSIAAAKQSLRRTLLDCGLADANATVTRMAHWFPSPVVTLEDLVRQMSVTASEDVVFLLAKPDARRTLASWRRAHSPVLSPSERWTSPRQVVCVVGPEGGLSSDEEDALLQAGAIGVSLGAQRLRTETAAVALAAAL 314          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A2D8PR62_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PR62_9PROT)

HSP 1 Score: 108 bits (271), Expect = 3.810e-25
Identity = 73/218 (33.49%), Postives = 119/218 (54.59%), Query Frame = 0
Query:   35 QLPQEERKHL-RVRRFRNGDRLVLFNSLGQTAAAVYQ--NEAAIILELQGSEVRDKSFSYLIAIPRSPS--RADWLVEKLTELGTDSIYFMQTKRTIVAD-PSPNKLQRWKRIAISASKQSMRDSTPSIAVVDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVL 246
            QL ++E ++L +  R   G+++ +F+  G  A A     +E    L++Q  +   K    L     +P   RADWLVEK+TE+G   + ++QT+R++V   P   K +RW R+A SA++QS R   P I     +  +++       F       P+ T + L     +GR ++++GPEGGF   E+++L N+G   + L  + LRTETAA+A+AAVL
Sbjct:   24 QLTKDESRYLLKALRLTEGEKIEVFDGQGFFALATLHRIDEGQPYLDVQEPQEAPKPDHELYLAVATPKGDRADWLVEKITEIGASGLIWLQTERSVVTPKPGSKKFERWARLADSAARQSRRVRVPKI-----QGPMSLEELSEQEFQNRLVASPIKTDNALPKGALQGRTVVVIGPEGGFTDHELEQLKNSGYNLLWLSPHILRTETAAIAAAAVL 236          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A2R4XIN6_9BURK (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Orrella marina TaxID=2163011 RepID=A0A2R4XIN6_9BURK)

HSP 1 Score: 108 bits (270), Expect = 7.600e-25
Identity = 74/240 (30.83%), Postives = 127/240 (52.92%), Query Frame = 0
Query:   21 RVFVDSFLRPEEVVQLPQEERKHLRVRRFRNGDRLVLFNSLGQTAAAVYQ--NEAAIILELQGSEVRDKSFSYLIAIPR---SPSRADWLVEKLTELGTDSIYFMQTKRTIV---ADPSPNKLQRWKRIAISASKQSMRDSTPSIAVVDFETALAVATRHPLPFLLCPKGK---PLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQL 249
            R F D+ L   + ++LP +   H+RVRR R G+ +VLF+  G+ A A     +++    +++ S +  +  S  I + +   S  + DW++EK TELG   +  +Q  R++V   +D +  +    +R+  SAS+Q  R+    + ++      A+      P L C   +   PL + S+L+ V R     + +GPEGG+  +E ++L+  GAV +SLG   LRTETA LA+ + L+ L
Sbjct:    9 RFFCDTRLEHCDTIELPDDVAHHVRVRRLREGEPIVLFDGKGRQAEARISVISKSLCQAKIESSSLVSREISGKITLVQAMASQDKMDWIIEKATELGVTRMIAVQASRSVVKLNSDRASKRAAHGRRLIESASEQCGRNHLMQL-LMPHSLKQAIEACKDQPMLACVLSEAALPLTSESLLETVRRHQGCSVFIGPEGGWAPDEQNELIKAGAVAISLGRRVLRTETAGLAAVSALTAL 247          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A256XXZ7_9ARCH (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Candidatus Woesearchaeota TaxID=1801616 RepID=A0A256XXZ7_9ARCH)

HSP 1 Score: 107 bits (266), Expect = 1.800e-24
Identity = 83/237 (35.02%), Postives = 123/237 (51.90%), Query Frame = 0
Query:   21 RVFVDSFLRPEEVVQLPQEERKHLRVRRFRNGDRLVLFNSLGQTAAAVYQN-----EAAIILELQGSEVRDKSFSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSMRDSTPSIAV-VDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREG-RVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLL 250
            R+F D  L+  E+V L +EE +H+ V R +  D++ LF+  G       ++     +  II   Q  E ++K    L        R+DWL EK TE+G D I  +  KR+I   P  NK++RWKRIA +AS QS R   P I+  ++ + AL          ++C K      G  +  ++ E  +++LLVGPEGGF  EE+  L      ++SLG N LRTETA +  A+V+   L
Sbjct:    4 RLFFDGKLK--EIVDLDKEESRHVNVLRLKKEDKVELFDGKGNIFKGKIESLGKTVKVKIIENTQ--EKKEKPTIELWTATPKGERSDWLTEKATEVGVDKIVPVIFKRSITI-PKKNKIERWKRIAKTASAQSKRAFIPEISEPIELKKALQKTKGQ---IIVCTKQ-----GKNITQIKTEKEKIILLVGPEGGFSEEELQLLKEKE--KLSLGKNTLRTETAGVIGASVVKLYL 225          
BLAST of Gcaud2129.t1 vs. uniprot
Match: UPI00055C047E (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055C047E)

HSP 1 Score: 105 bits (263), Expect = 6.160e-24
Identity = 75/228 (32.89%), Postives = 119/228 (52.19%), Query Frame = 0
Query:   28 LRPEEVVQLPQEERKHLRVRRFRNGDRLVLFNSLGQT-AAAVYQNEAAIILELQGSEVRDKSFSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSMRDSTPSIAV-VDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLLFRN 253
            +R  ++   P ++   LRV R + GDR +  N LGQ  +A + +  A II  L       +S + + A+P+  S  + +V   TELG ++   + + RTI+  PSPNK+QRW++IA  A++QS R   P IA  V ++ AL         FL   +G        L +V  EG +++  G EGG+   EI+  ++ G  +VSLG   LR  TA + + A+   +L +N
Sbjct:   12 IRDRQITLTPAQQHYLLRVLRLKTGDRFIAMNGLGQAWSAEIRETSANIIEPLDIDNELSQSITSIAALPKG-SGYEQIVRCCTELGVNNFIPVISDRTILK-PSPNKVQRWRKIAAEAAEQSERQIVPYIATPVSWQEALNNTADLSQKFLCVARGDKPSLAKCLQEVS-EGEIVIATGCEGGWTEAEIELAISFGYRQVSLGKRILRAVTAPITALAIAGAILEQN 236          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A7C6DIZ4_9BACT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C6DIZ4_9BACT)

HSP 1 Score: 105 bits (263), Expect = 8.470e-24
Identity = 84/241 (34.85%), Postives = 123/241 (51.04%), Query Frame = 0
Query:   21 RVFVDSFLRPEEVVQLPQEERKHLR-VRRFRNGDRLVLFNSLGQTAAAVYQ--NEAAIILELQGSEVRDKSFSYLI---AIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSMRDST----PSIAVVDFETALAVATRHPLPFLLC-PKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLL 250
            RV V S  R E + QL + +  H+R V R R GD L LF+  G  AAA  +  + +A++  +   E    + + LI   A+P+   RADW++EKL+ELG      +   R++V      K+ RW+RIA  A++QS R       P I+V +F   L      P  +L   P   PLL  S    +     V +L+GPEGG+  EEI +    G     L    LR ETAA+A+AA+++ +L
Sbjct:   18 RVHVSSLGRTERI-QLDRAQAHHVRDVLRMRTGDELELFDDAGHVAAATIEQCDASAVVARIHRIEQPPGAQTALIVASAVPKG-DRADWMIEKLSELGVGRFVPLAAARSVVRPGGQKKVDRWRRIATEAARQSRRPGVMQIDPLISVDEFVPTLP----PPAVYLSTEPHATPLLRLS--SAIVACSSVAVLIGPEGGWSHEEIARFARFGLTGAKLTETILRVETAAVAAAAIIAAIL 250          
BLAST of Gcaud2129.t1 vs. uniprot
Match: A0A844FI10_9FIRM (Ribosomal RNA small subunit methyltransferase E n=3 Tax=Tissierellia TaxID=1737404 RepID=A0A844FI10_9FIRM)

HSP 1 Score: 104 bits (260), Expect = 1.650e-23
Identity = 75/237 (31.65%), Postives = 126/237 (53.16%), Query Frame = 0
Query:   21 RVFVDSFLRPEEVVQLPQEERKHLR-VRRFRNGDRLVLFNS--LGQTAAAVYQNE---AAIILELQGSEVRDKSFSYLIAIPRSPSRADWLVEKLTELGTDSIYFMQTKRTIVA----DPSPNKLQRWKRIAISASKQSMRDSTPSI-AVVDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRVLLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVL 246
            R F+D     EE++ +  E+ KH+R V R + GD++ + +   L     ++ + +   A I+    G      S      +P+S S+ D++++K TE+G   IY ++TKRT+V         NK+ RW +I+  A+KQS RD  P + +++ F+  + +        +     K      VL D   + +V +++GPEGGF+ EEID+L + G+  VSLG   LRTETA L + ++L
Sbjct:    3 RFFIDKENISEELITIEGEDVKHIRDVIRLKEGDKIEISSEGILYICEISIIEKKKVIAKILHRESGDHEPPISIILYQGLPKS-SKMDFIIQKATEIGVKEIYPIKTKRTVVKIDNKKKEKNKIDRWNKISEEAAKQSKRDYVPKVKSILSFKEMIKLLEDEENILVPYENEKTTSMKDVLKDFSNK-KVHIIIGPEGGFEEEEIDELEDIGSKIVSLGPRILRTETAGLVALSIL 237          
The following BLAST results are available for this feature:
BLAST of Gcaud2129.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH59_9FLOR1.200e-8555.2016S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
R7QLU6_CHOCR5.700e-5442.9816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A656D426_9BACT1.810e-2535.59Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A7J7ILD3_9RHOD2.380e-2532.6816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A2D8PR62_9PROT3.810e-2533.49Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2R4XIN6_9BURK7.600e-2530.83Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A256XXZ7_9ARCH1.800e-2435.0216S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
UPI00055C047E6.160e-2432.8916S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A7C6DIZ4_9BACT8.470e-2434.85Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A844FI10_9FIRM1.650e-2331.65Ribosomal RNA small subunit methyltransferase E n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 88..253
e-value: 2.0E-42
score: 146.6
IPR006700Ribosomal RNA small subunit methyltransferase EPIRSFPIRSF015601MTase_slr0722coord: 18..252
e-value: 1.1E-47
score: 158.4
IPR006700Ribosomal RNA small subunit methyltransferase ETIGRFAMTIGR00046TIGR00046coord: 22..249
e-value: 1.2E-33
score: 114.4
IPR006700Ribosomal RNA small subunit methyltransferase EPFAMPF04452Methyltrans_RNAcoord: 34..247
e-value: 7.1E-44
score: 149.8
IPR006700Ribosomal RNA small subunit methyltransferase EPANTHERPTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Ecoord: 21..247
NoneNo IPR availableGENE3D2.40.240.20coord: 18..82
e-value: 2.2E-8
score: 35.9
NoneNo IPR availableCDDcd18084RsmE-likecoord: 92..237
e-value: 7.33974E-43
score: 141.144
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 92..249
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 20..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:1779..2546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2129.t1Gcaud2129.t1Gracilaria caudata M_176_S67 malemRNANODE_116_length_48691_cov_4.274671 1779..2546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2129.t1 ID=Gcaud2129.t1|Name=Gcaud2129.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MTDASRERISYPTGKAKSETRVFVDSFLRPEEVVQLPQEERKHLRVRRFR
NGDRLVLFNSLGQTAAAVYQNEAAIILELQGSEVRDKSFSYLIAIPRSPS
RADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSM
RDSTPSIAVVDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRV
LLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLL
FRNRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029026tRNA_m1G_MTases_N
IPR006700rRNA_ssu_MeTrfase-E
IPR029028Alpha/beta_knot_MTases
IPR015947PUA-like_sf