Gcaud2117.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2117.t1
Unique NameGcaud2117.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length318
Homology
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BLAST of Gcaud2117.t1 vs. uniprot
Match: A0A2V3ISL3_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL3_9FLOR)

HSP 1 Score: 243 bits (621), Expect = 2.970e-74
Identity = 142/294 (48.30%), Postives = 191/294 (64.97%), Query Frame = 0 
Query:    1 YVALITLVFIFACALYFAISNWRGIDREM-NDSQWRERECTLVGDIQVLQRADTEQF-RVRVNVTLSSAQQTPQAAYYGRMQTTY---SQSEAQQIRTDLTARREQNNDTLPCWVRDALSTPSAISLLPISASSSVYLAWTGTFMAAVVGVILITVCSSSLGAPMGVAPRARGGVTTTPPAVAKSTHLTERQAMSVCARFEQQVDARSVK-EWTCSICLEDEHEHAQHTVNTVVLPCGHRFHNACIKQWLWKGKGLCPLCKWDAREFIAEQKRAAAHAADEALSSEWDAATTTS 288
            Y+AL TLV IF C+LYFAI+NWRGI+R+    + W++R+CT+   +Q  ++    +F RV VNVT+S        AYYG  ++     S+ EAQ+    L  +     + L CWV DA S    +SL  I+ S+SVYLAWTGTF+AAVVGV++ITV S+S   P+GV+   R  +   PP VAKS HLTERQA+ +C +F Q + A+S   +WTCSICL+D++  +   + TVVLPC HRFH  CIK+WLWKGKG CPLCKWDAR+FI ++K+A       A     +AAT +S
Sbjct:   52 YIALATLVVIFICSLYFAITNWRGIERDAATPNVWKKRKCTVKSKVQTERKRPLSEFHRVFVNVTVSGRVSKVTKAYYGPSESKLPDLSEEEAQKRANQLNEQIRIGTE-LNCWVADADSDNPKVSLTAITTSASVYLAWTGTFLAAVVGVVIITVFSNSTHGPLGVS-YLREPLVMAPP-VAKSVHLTERQALRICNKFAQDIRAQSCDADWTCSICLDDDY--STDLIKTVVLPCDHRFHTLCIKRWLWKGKGECPLCKWDARKFIDKEKKADRERFASAAEFTTEAATDSS 340
The following BLAST results are available for this feature:
BLAST of Gcaud2117.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISL3_9FLOR2.970e-7448.30RING-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 209..254
e-value: 1.9E-10
score: 50.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 208..255
e-value: 5.1E-10
score: 39.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 209..255
score: 12.902362
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 194..294
e-value: 1.0E-14
score: 56.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..317
NoneNo IPR availablePANTHERPTHR22765:SF332ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 68..263
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 68..263
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..317
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..130
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 203..260
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 4..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_789_length_17968_cov_4.013593contigNODE_789_length_17968_cov_4.013593:458..1830 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2117.t1Gcaud2117.t1Gracilaria caudata M_176_S67 malemRNANODE_789_length_17968_cov_4.013593 458..1830 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=318bp
YVALITLVFIFACALYFAISNWRGIDREMNDSQWRERECTLVGDIQVLQR
ADTEQFRVRVNVTLSSAQQTPQAAYYGRMQTTYSQSEAQQIRTDLTARRE
QNNDTLPCWVRDALSTPSAISLLPISASSSVYLAWTGTFMAAVVGVILIT
VCSSSLGAPMGVAPRARGGVTTTPPAVAKSTHLTERQAMSVCARFEQQVD
ARSVKEWTCSICLEDEHEHAQHTVNTVVLPCGHRFHNACIKQWLWKGKGL
CPLCKWDAREFIAEQKRAAAHAADEALSSEWDAATTTSTTTPPSTPSTPS
TPNTRTTRGGSVRVSTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD