Gcaud2114.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2114.t1
Unique Name	Gcaud2114.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	176

Homology

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BLAST of Gcaud2114.t1 vs. uniprot
Match: Q4U1I2_GRALE (Ubiquitin n=2 Tax=Gracilariopsis TaxID=2781 RepID=Q4U1I2_GRALE)

HSP 1 Score: 249 bits (637), Expect = 5.090e-83
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0

Query:   48 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNC+RK+CRKCYARLPP+AVNCRKKKCGHSNQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCERKVCRKCYARLPPKAVNCRKKKCGHSNQLRPKKKLK 128

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BLAST of Gcaud2114.t1 vs. uniprot
Match: R7QQT8_CHOCR (Ribosomal-ubiquitin fusion protein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QQT8_CHOCR)

HSP 1 Score: 235 bits (599), Expect = 1.010e-76
Identity = 117/128 (91.41%), Postives = 124/128 (96.88%), Query Frame = 0

Query:   48 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            MQIFVKTLTGKTITLEVE+SD+I+NVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEP+LA LAR TNCDR +CRKCYARLPP+AVNCRKKKCGHSNQLR KKK+K
Sbjct:   35 MQIFVKTLTGKTITLEVEASDNIANVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPTLAALARATNCDRMVCRKCYARLPPKAVNCRKKKCGHSNQLRIKKKIK 162

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BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A0M8P123_9EURO (Ubiquitin-like domain-containing protein n=6 Tax=Aspergillaceae TaxID=1131492 RepID=A0A0M8P123_9EURO)

HSP 1 Score: 233 bits (593), Expect = 5.540e-76
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0

Query:   44 KLFTMQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            KL TMQIFVKTLTGKTITL+VESSD+I NVKTKIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA + NCD+ ICRKCYARLPPRA NCRKKKCGH+NQLRPKKKLK
Sbjct:   20 KLATMQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKAICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 151

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BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A117NMP4_9EURO (Ubiquitin-like domain-containing protein n=2 Tax=Penicillium TaxID=5073 RepID=A0A117NMP4_9EURO)

HSP 1 Score: 232 bits (591), Expect = 4.230e-75
Identity = 123/163 (75.46%), Postives = 133/163 (81.60%), Query Frame = 0

Query:   13 TWAFHLASEKQIKLNIFANSAPQRLTESALFKLFTMQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            +W   +AS      N   +S  QR       KL TMQIFVKTLTGKTITL+VESSD+I NVKTKIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA + NC++ ICRKCYARLPPRA NCRKKKCGH+NQLRPKKKLK
Sbjct:   39 SWRIDIASSAW---NTATDSRQQR-------KLATMQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCEKAICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 191

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BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A163CHY8_DIDRA (Structural constituent of ribosome n=9 Tax=Pleosporineae TaxID=715340 RepID=A0A163CHY8_DIDRA)

HSP 1 Score: 229 bits (585), Expect = 4.260e-75
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 0

Query:   48 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            MQIFVKTLTGKTITLEVESSD+I NVK+KIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA + NCD+ ICRKCYARLPPRAVNCRKKKCGH+NQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 128

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BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A0L0HIA2_SPIPD (Ubiquitin-60S ribosomal protein L40 n=4 Tax=Fungi incertae sedis TaxID=112252 RepID=A0A0L0HIA2_SPIPD)

HSP 1 Score: 229 bits (585), Expect = 4.260e-75
Identity = 114/128 (89.06%), Postives = 120/128 (93.75%), Query Frame = 0

Query:   48 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            MQIFVKTLTGKTITLEVESSDSI NVK KIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA + NC++ +CRKCYARLPPRA NCRKKKCGH+NQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDSIQNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKMVCRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128

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BLAST of Gcaud2114.t1 vs. uniprot
Match: B0XNB9_ASPFC (Ubiquitin UbiA, putative n=5 Tax=Aspergillaceae TaxID=1131492 RepID=B0XNB9_ASPFC)

HSP 1 Score: 229 bits (584), Expect = 9.630e-75
Identity = 114/130 (87.69%), Postives = 121/130 (93.08%), Query Frame = 0

Query:   46 FTMQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            FT+QIFVKTLTGKTITL+VESSD+I NVK KIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA + NC++ ICRKCYARLPPRA NCRKKKCGHSNQLRPKKKLK
Sbjct:   13 FTVQIFVKTLTGKTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKSICRKCYARLPPRATNCRKKKCGHSNQLRPKKKLK 142

[Close]

BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A6T8T922_NOCSC (Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A6T8T922_NOCSC)

HSP 1 Score: 229 bits (585), Expect = 9.780e-75
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 0

Query:   48 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            MQIFVKTLTGKTITL+VE+SD+I NVK KIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LAR+ NCDR ICRKCYARLPPRAVNCRKKKCGH+NQLRPKKKLK
Sbjct:   26 MQIFVKTLTGKTITLDVEASDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLQVLARKFNCDRMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 153

[Close]

BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A5N6JFQ7_9EURO (Ubiquitin-related domain-containing protein n=4 Tax=Aspergillus TaxID=5052 RepID=A0A5N6JFQ7_9EURO)

HSP 1 Score: 229 bits (585), Expect = 1.080e-74
Identity = 119/155 (76.77%), Postives = 132/155 (85.16%), Query Frame = 0

Query:   24 IKLNIFANSAPQRLT---ESALFKLFTMQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            +KL++ A+S    L+        K+ TMQIFVKTLTGKTITL+VESSD+I NVK KIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA + NC++ ICRKCYARLPPRA NCRKKKCGH+NQLRPKKKLK
Sbjct:    2 VKLSVIASSDRPDLSAIVSQQQRKIATMQIFVKTLTGKTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKNICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 156

[Close]

BLAST of Gcaud2114.t1 vs. uniprot
Match: A0A177V1G9_9BASI (Ubiquitin-like domain-containing protein n=7 Tax=Basidiomycota TaxID=5204 RepID=A0A177V1G9_9BASI)

HSP 1 Score: 228 bits (582), Expect = 1.220e-74
Identity = 114/128 (89.06%), Postives = 121/128 (94.53%), Query Frame = 0

Query:   48 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARLPPRAVNCRKKKCGHSNQLRPKKKLK 175
            MQIFVKTLTGKTITLEVESSD+I NVKTKIQDKEGIPPDQQRLIFAGKQLED RTLSDYNIQKESTLHLVLRLRGG+IEPSL  LA +TNCD++ICRKCYARLPPRA NCRK+ CGHS+QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKVLASKTNCDKQICRKCYARLPPRATNCRKRACGHSSQLRPKKKLK 128

The following BLAST results are available for this feature:

BLAST of Gcaud2114.t1 vs. uniprot

BLAST of Gcaud2114.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q4U1I2_GRALE	5.090e-83	97.66	Ubiquitin n=2 Tax=Gracilariopsis TaxID=2781 RepID=...	[more]
R7QQT8_CHOCR	1.010e-76	91.41	Ribosomal-ubiquitin fusion protein n=2 Tax=Rhodyme...	[more]
A0A0M8P123_9EURO	5.540e-76	88.64	Ubiquitin-like domain-containing protein n=6 Tax=A...	[more]
A0A117NMP4_9EURO	4.230e-75	75.46	Ubiquitin-like domain-containing protein n=2 Tax=P...	[more]
A0A163CHY8_DIDRA	4.260e-75	89.84	Structural constituent of ribosome n=9 Tax=Pleospo...	[more]
A0A0L0HIA2_SPIPD	4.260e-75	89.06	Ubiquitin-60S ribosomal protein L40 n=4 Tax=Fungi ...	[more]
B0XNB9_ASPFC	9.630e-75	87.69	Ubiquitin UbiA, putative n=5 Tax=Aspergillaceae Ta...	[more]
A0A6T8T922_NOCSC	9.780e-75	89.84	Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 ...	[more]
A0A5N6JFQ7_9EURO	1.080e-74	76.77	Ubiquitin-related domain-containing protein n=4 Ta...	[more]
A0A177V1G9_9BASI	1.220e-74	89.06	Ubiquitin-like domain-containing protein n=7 Tax=B...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 79..99 score: 95.05 coord: 100..121 score: 88.34 coord: 58..78 score: 76.43
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 48..119 e-value: 4.1E-35 score: 132.7
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 50..121 e-value: 3.4E-33 score: 113.2
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 48..123 score: 30.626308
IPR001975	Ribosomal protein L40e	SMART	SM01377	Ribosomal_L40e_3	coord: 124..175 e-value: 9.2E-30 score: 114.9
IPR001975	Ribosomal protein L40e	PFAM	PF01020	Ribosomal_L40e	coord: 125..174 e-value: 1.1E-28 score: 98.9
IPR038587	Ribosomal protein L40e superfamily	GENE3D	4.10.1060.50		coord: 129..175 e-value: 1.0E-29 score: 104.2
None	No IPR available	GENE3D	3.10.20.90		coord: 42..128 e-value: 1.8E-45 score: 154.8
None	No IPR available	PANTHER	PTHR10666:SF368	UBIQUITIN-60S RIBOSOMAL PROTEIN L40	coord: 48..172
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 48..172
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 48..123 e-value: 2.89245E-53 score: 162.228
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 74..99
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 123..175
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 47..123

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1126_length_13510_cov_4.780237	contig	NODE_1126_length_13510_cov_4.780237:5240..5957 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2114.t1	Gcaud2114.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1126_length_13510_cov_4.780237 5240..5957 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2114.t1 ID=Gcaud2114.t1|Name=Gcaud2114.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=176bp
MPNSDSQAATRVTWAFHLASEKQIKLNIFANSAPQRLTESALFKLFTMQI
FVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDD
RTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARL
PPRAVNCRKKKCGHSNQLRPKKKLK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019956	Ubiquitin_dom
IPR000626	Ubiquitin-like_dom
IPR001975	Ribosomal_L40e
IPR038587	L40e_sf
IPR019954	Ubiquitin_CS
IPR011332	Ribosomal_zn-bd
IPR029071	Ubiquitin-like_domsf