Gcaud2108.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2108.t1
Unique NameGcaud2108.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Homology
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BLAST of Gcaud2108.t1 vs. uniprot
Match: R7QRN6_CHOCR (GATA-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRN6_CHOCR)

HSP 1 Score: 79.3 bits (194), Expect = 5.900e-16
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:   11 RMCEACGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPDSERLKPGPKRS 61
            R C+ C  + TSQWRYG + K+LLCNACGI+WKRKN   D  RLKPGPKRS
Sbjct:    8 RACQTCHTSVTSQWRYGLSGKVLLCNACGIRWKRKNRTTDKRRLKPGPKRS 58
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BLAST of Gcaud2108.t1 vs. uniprot
Match: A0A139AKW7_GONPJ (GATA-type domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AKW7_GONPJ)

HSP 1 Score: 53.5 bits (127), Expect = 7.320e-6
Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 0 
Query:   10 PRMCEACGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPDSERLKPGPKRSGTAH-GSG 68
            PR+C  CG   T  WR+G     +LCN+CG+KW+R    PD    K  P   G+ H GSG
Sbjct:  448 PRVCTYCGSGSTPMWRHGPPPYAILCNSCGVKWRRGKILPDMPHAKYRP---GSGHWGSG 504
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BLAST of Gcaud2108.t1 vs. uniprot
Match: A0A433PIF3_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PIF3_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 9.990e-6
Identity = 34/107 (31.78%), Postives = 52/107 (48.60%), Query Frame = 0 
Query:   13 CEACGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPDSERLKPGPKRSGTAHGSGSMELSALLSPEESSRRPP----RTSGITITDLLNDDVA--LVAADVTARGA 113
            C+ CG+ ++S WR G      LCNACG++W+ KNP  D      GP+  G+      +  SA   P    R       + + +T+  LL+ D++  + AAD   R A
Sbjct:  317 CQDCGKMESSAWRRGPGGPSTLCNACGLRWRSKNPSLDF-----GPRVRGSNRQQKRILKSAAPKPPAVPRVKTMLRVKAARMTVASLLSADLSPSVAAADEVDRPA 418
The following BLAST results are available for this feature:
BLAST of Gcaud2108.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QRN6_CHOCR5.900e-1666.67GATA-type domain-containing protein n=1 Tax=Chondr... [more]
A0A139AKW7_GONPJ7.320e-643.33GATA-type domain-containing protein n=1 Tax=Gonapo... [more]
A0A433PIF3_9FUNG9.990e-631.78Uncharacterized protein (Fragment) n=1 Tax=Endogon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 7..58
e-value: 1.9E-7
score: 40.8
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 13..45
e-value: 3.7E-11
score: 42.4
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 7..43
score: 9.182815
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 13..60
e-value: 4.07067E-11
score: 51.9898
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 4..66
e-value: 5.0E-13
score: 50.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..91
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 6..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_112_length_49450_cov_4.312142contigNODE_112_length_49450_cov_4.312142:40317..40800 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1Gcaud2108.t1Gracilaria caudata M_176_S67 malemRNANODE_112_length_49450_cov_4.312142 40317..40800 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2108.t1 ID=Gcaud2108.t1|Name=Gcaud2108.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MTGSSSGSSPRMCEACGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPD
SERLKPGPKRSGTAHGSGSMELSALLSPEESSRRPPRTSGITITDLLNDD
VALVAADVTARGAKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA