Gcaud2077.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2077.t1
Unique NameGcaud2077.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length257
Homology
BLAST of Gcaud2077.t1 vs. uniprot
Match: A0A2V3IRV0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV0_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 1.740e-61
Identity = 112/245 (45.71%), Postives = 158/245 (64.49%), Query Frame = 0
Query:   14 WTAKYSCPQPGVESFNEWSVRGFYDDKFDDPWNLNLGENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFSNPINLPSLVFRRITPNRSA----ESEGSAIWSPYHGLSRWTYGNLIFMGVLIVLIEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVPLTEKAGFDSRASIQICSANLVYAT---EKSSLNDSFYFYLEFNVLNVDGVQVTIRH 251
            W A Y+C + G+  +++W + GFY+DKF+DP NLNL EN VSL+TA++ SFS+ILF DIVFR+ VRAK ++V  +VV RR +L  FSNPINL S++  ++   +SA    E   +  W      S+  +  L+ +G+L V +E+LFIFLATNQ K Y  ++D VP+FEFEDRGCE +  P   SC     TEKAGF++   +QICS+  V A    EK S ++     + F +L+ DGV V +R+
Sbjct:   21 WMATYNCSRKGLGHYSKWDLHGFYEDKFNDPLNLNLSENAVSLLTALSCSFSLILFTDIVFRIAVRAKTNQVSKQVVFRRHLLNSFSNPINLLSVLVNKLQSKQSASTSTEGTQNLEWKALTPSSKRNFTLLLLLGLLTVFVEFLFIFLATNQNKMYAFQLDEVPVFEFEDRGCERIASPVIDSCIQESWTEKAGFNTHGYLQICSSQTVSAAVEDEKLSKSNGI---VSFVILDTDGVDVIVRY 262          
BLAST of Gcaud2077.t1 vs. uniprot
Match: A0A2V3J1Z3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Z3_9FLOR)

HSP 1 Score: 206 bits (524), Expect = 4.510e-60
Identity = 111/245 (45.31%), Postives = 154/245 (62.86%), Query Frame = 0
Query:   14 WTAKYSCPQPGVESFNEWSVRGFYDDKFDDPWNLNLGENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFSNPINLPSLVFRRITPNRSAESEGSAI----WSPYHGLSRWTYGNLIFMGVLIVLIEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVPLTEKAGFDSRASIQICSANLVYATEK---SSLNDSFYFYLEFNVLNVDGVQVTIRH 251
            W   + C Q G++  +EW + GFY+DKF+DP N NL EN VSLITA+ T+FS+ILF DI++R+ VRA++ RV  + V R  +L  FSNPINL S    ++    SA +         W+     ++ TY     MG+L + +E+LFIFLATNQ K YD++++ VPIFEFEDRGC+ +  P   SC   PLTEKAGFDSRA +QICS   +    +   S+L +  Y  + F +L+ DGV VT+ +
Sbjct:   13 WMKTFHCSQKGLDEDSEWDLHGFYEDKFNDPSNFNLSENAVSLITALLTAFSLILFTDIMYRIAVRARSHRVSKKAVFRYHLLNSFSNPINLLSCFIEKLRSRFSASAPVGGTQNLEWNTLSRSTKRTYTAYFLMGLLTIFVEFLFIFLATNQNKVYDLQLE-VPIFEFEDRGCDRIASPVTDSCIQQPLTEKAGFDSRAYLQICSTLSIALNPEGVASTLGNPNYGLVLFALLDTDGVDVTVMY 256          
BLAST of Gcaud2077.t1 vs. uniprot
Match: A0A2V3J847_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J847_9FLOR)

HSP 1 Score: 191 bits (485), Expect = 1.980e-54
Identity = 104/215 (48.37%), Postives = 135/215 (62.79%), Query Frame = 0
Query:    6 ISETQASQWTAKYSCPQPGVESFNEWSVRGFYDDKFDDPWNLNLGENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFSNPINLPSLVFRRITPNRSAESEGSAIWSPYHGLS----RWTYGNLIFMGVLIVLIEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVPLTEKAGFDSRASIQICSA 216
            I  T +   +  + C +PG++  ++WSVRGFY++KF+DP N NL EN VSLITAIATSFS++LF DIVFR  VRAK + V   V+ RR VLE FSNP+ L   +                      G S    + TY  L  MG+L V  E++FIFLATNQ   YD+++D VPIFEF+DRGCE + PP   +C  VPLTEK GF+ R ++QICS+
Sbjct:    5 IRNTSSQLNSTDFFCSRPGLDEASQWSVRGFYENKFNDPLNFNLSENSVSLITAIATSFSLVLFNDIVFRALVRAKINEVNKHVILRRHVLETFSNPLTL--FLLXXXXXXXXXXXXXXXXXXXXXGSSSRKAKITYAALCAMGLLTVFAEFVFIFLATNQNGVYDVQLDGVPIFEFDDRGCEFVGPPTWNACIQVPLTEKPGFNPRGALQICSS 217          
BLAST of Gcaud2077.t1 vs. uniprot
Match: A0A2V3ICE5_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICE5_9FLOR)

HSP 1 Score: 189 bits (479), Expect = 1.230e-53
Identity = 105/235 (44.68%), Postives = 146/235 (62.13%), Query Frame = 0
Query:   20 CPQPGVESFNEWSVRGFYDDKFDDPWNLNLGENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFSNPINLPSLVFRRITPNRSAESEGSAIWSPYHGLSRWTYGNLIFMGVLIVLIEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVP-LTEKAGFDSRASIQIC---SANLVYATEKSSLNDSFYFYLEFNVLNVDGVQVTIR 250
            CP     + + W VRGFYDDKF+DP N NLGEN VS++TAI TSFS++LFVDI+FRV VRAKN  V   VV RR ++++ SNPI L + V R I   R      +  + P     +WTY +L+ +G + V +E++FIFL+T Q K +D+ +  VP+FEF+DRGCE + P    +C+ +  + EKAGF+SRA IQ C   SA+L+    K   +   +  L  N   V G+  T+R
Sbjct:    6 CPGNRSNAADLWDVRGFYDDKFNDPMNFNLGENTVSILTAITTSFSLLLFVDIIFRVSVRAKNGEVSKRVVLRRHIVDNCSNPITLCATVLRGIRTKRPWNRNQA--FGPQLTSGKWTYASLVVLGFVAVCMEFIFIFLSTGQKKVFDVHLGTVPVFEFKDRGCESVFPVPINTCNNMGGIAEKAGFESRAYIQACTGYSASLLKTGGKFGESGEAFISLIIN--RVVGITATLR 236          
The following BLAST results are available for this feature:
BLAST of Gcaud2077.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRV0_9FLOR1.740e-6145.71Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1Z3_9FLOR4.510e-6045.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J847_9FLOR1.980e-5448.37Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICE5_9FLOR1.230e-5344.68Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..137
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 160..256
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..159
NoneNo IPR availableTMHMMTMhelixcoord: 137..159
NoneNo IPR availableTMHMMTMhelixcoord: 52..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_503_length_23508_cov_5.792160contigNODE_503_length_23508_cov_5.792160:10994..11880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2077.t1Gcaud2077.t1Gracilaria caudata M_176_S67 malemRNANODE_503_length_23508_cov_5.792160 10994..11880 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2077.t1 ID=Gcaud2077.t1|Name=Gcaud2077.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MQSVSISETQASQWTAKYSCPQPGVESFNEWSVRGFYDDKFDDPWNLNLG
ENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFS
NPINLPSLVFRRITPNRSAESEGSAIWSPYHGLSRWTYGNLIFMGVLIVL
IEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVPLT
EKAGFDSRASIQICSANLVYATEKSSLNDSFYFYLEFNVLNVDGVQVTIR
HTFGKN*
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