Gcaud2070.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2070.t1
Unique NameGcaud2070.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length281
Homology
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A2V3IYH5_9FLOR (PXMP2/4 family protein 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYH5_9FLOR)

HSP 1 Score: 451 bits (1160), Expect = 1.470e-158
Identity = 218/281 (77.58%), Postives = 244/281 (86.83%), Query Frame = 0
Query:    1 MTVPIAAMHAAQKGRLPNPAVHSSIRRKCRFPRRSLGFLLLITVFVVVLYDVVPSLIDASYVSSFHPHEVRRISRRTLRLYQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNVNR-PSAQPAKFLNHDRRSAPSTPRRRSSNSV 280
            MTVP++ MHAAQKGRLP PA+H S RR+C FPRRSLG LLLI   +VVLYD+ P+ ID++++S+F PH VRR SRRTLRLYQRQLHLHPLSSRA+TA IIFFIADV AQ LS+P SA LC  FQFDRLFRY+LYGLVVMGPFLYVWYEAMH YGP DDL+GSL+KCLFEQ+TLEPCCIIMYI YDA+ICRRG  + R+TLA KFLPLWFKNA+FWLPANFANYYIGTPDLRV+FANLCSLFWNIYFSGNVNR PS Q +  L+H R+S PSTPR  SSNSV
Sbjct:    1 MTVPVSIMHAAQKGRLPRPAIHPSKRRRCHFPRRSLGVLLLILGAIVVLYDIAPTFIDSTHISAFSPHHVRRFSRRTLRLYQRQLHLHPLSSRAVTAAIIFFIADVFAQFLSSPRSASLCFAFQFDRLFRYTLYGLVVMGPFLYVWYEAMHQYGPDDDLRGSLVKCLFEQITLEPCCIIMYIGYDAIICRRGLATARQTLAAKFLPLWFKNAVFWLPANFANYYIGTPDLRVIFANLCSLFWNIYFSGNVNRSPSQQSSNNLSHQRKSPPSTPRHLSSNSV 281          
BLAST of Gcaud2070.t1 vs. uniprot
Match: R7QG39_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG39_CHOCR)

HSP 1 Score: 285 bits (728), Expect = 4.410e-92
Identity = 138/214 (64.49%), Postives = 159/214 (74.30%), Query Frame = 0
Query:   53 VPSLIDASYVSSFHPHEVRRISRRTLRLYQRQLHLHPLSSRAITAGIIFFIADVSAQLLS--TPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNVNRPSAQPAKFLNHD 264
            +PSL+  S          RR+++RTLRLYQRQLHLHPL SRAITAG+IFFIAD  AQ+L+    P  P    F F RL RY++YGL+ MGPFLY+WY  M+ YGP DD+ GSLIKC+FEQ+TLEP CI MYI YD  +CRRGW   RK L  +F PLWFKNA+FWLPANFANYYIGTPDLRVVFANLCSLFWNIYFS  VN+ S     F+ HD
Sbjct:   88 IPSLLHLSQ-------HTRRVAKRTLRLYQRQLHLHPLLSRAITAGVIFFIADFLAQVLNRRANPKPP---AFSFTRLLRYTVYGLIAMGPFLYLWYALMNEYGPEDDISGSLIKCIFEQITLEPICISMYIIYDGFVCRRGWSPVRKALDAQFFPLWFKNAVFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSSKVNKMSVP--SFVPHD 289          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A1X6NTV4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTV4_PORUM)

HSP 1 Score: 203 bits (516), Expect = 9.820e-58
Identity = 105/193 (54.40%), Postives = 127/193 (65.80%), Query Frame = 0
Query:   59 ASYVSSFHPHEVRRISRRTLRLYQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNVN 251
            AS+V   H   +RR  RR L +Y   LH  PL SRAI+AG+IF  AD  AQ LS+  +      F + RL RYS YGL+VMGPFLY+WY  MH YGP D L G+  K LFEQ+TLEP CI  Y+ +D  + RR     R  L  +F  L  KNA+FW+PANF+NY  GTPDLRV++ANLCSLFWN+YFS  VN
Sbjct:  358 ASFVR-LHATTIRRTCRRLLLIYIHILHARPLVSRAISAGVIFLSADFLAQRLSSSTT-----PFDYVRLLRYSSYGLIVMGPFLYLWYSVMHLYGPDDTLIGAAQKALFEQITLEPLCIGGYMVWDGAMRRRPMGEVRARLRAQFWGLLLKNAVFWVPANFSNYAAGTPDLRVLYANLCSLFWNVYFSSFVN 544          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A5J4YZM9_PORPP (Protein Mpv17 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZM9_PORPP)

HSP 1 Score: 179 bits (455), Expect = 6.230e-52
Identity = 90/194 (46.39%), Postives = 122/194 (62.89%), Query Frame = 0
Query:   70 VRRISRRTLRLYQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNVNR-PSAQPAKFLN 262
            +RR +R  ++ Y R L   PL +RA+TAGIIF  AD+SAQLL  P +A     +   R  ++  YG   MGPFL++WY  MH Y P D   GSL+K +FE++TLEP CI  ++ YD ++ R+            F+ LW KNA FW+P NF NYY+GTPD RV+FAN CS +WN+YFS  V + P++  +K LN
Sbjct:   70 LRRQTRMGIKWYTRVLIKLPLFARAVTAGIIFSCADISAQLL-VPNTA-----YSLKRTLKFGSYGFGFMGPFLHLWYMFMHEYAPGDSFAGSLVKSIFEEVTLEPICIACFLLYDCLLNRKKPHEISARYRESFMSLWKKNAYFWIPGNFLNYYVGTPDFRVIFANCCSFWWNVYFSLQVAQVPNSAISKPLN 257          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A5J4YZN3_PORPP (PXMP2/4 family protein 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZN3_PORPP)

HSP 1 Score: 145 bits (365), Expect = 7.780e-38
Identity = 78/206 (37.86%), Postives = 111/206 (53.88%), Query Frame = 0
Query:   79 RLYQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSA-----------------------PLCHEFQFD--RLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNVNRPSAQPAK 259
            R Y   L   P  ++ I+ G+I F+AD + Q++    S                         L   F+ D  RL +++LYGL+V GP+L++WY  +  YGP D L  SL KC+ EQL LEP CI  Y  +  V  R+          ++FL L+ KNA+FW+PANF NY++GT D RVVFA++CS FW ++ +   NR   +PAK
Sbjct:   98 REYLWLLRHKPFRTKVISVGVITFLADCTGQIMMHLQSIRGQRRSSARHTVLVTSDRHQKGKSLIRGFRLDVWRLIKFTLYGLLVNGPWLFLWYNLIAKYGPGDGLLNSLQKCVLEQLVLEPACISNYALWFHVTNRKPMRECLAWYRSEFLGLYRKNAIFWMPANFLNYFLGTGDFRVVFASVCSFFWTVFMNLLFNRKKEEPAK 303          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A7S0XJ68_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJ68_9RHOD)

HSP 1 Score: 124 bits (312), Expect = 1.910e-31
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   69 EVRRISRRTLRLYQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAV 187
            ++R+ +RR L+ Y   L LHP S RAITAG+IF +AD+ AQ L+         +F + R+ +Y +YGL +MGPFLY WY  MH Y P D   G++ K LFEQLTLEP CI+ Y+ YD V
Sbjct:   80 KLRKYTRRGLKWYLGVLELHPFSGRAITAGLIFTMADICAQKLAGTD------KFSYKRVLKYGIYGLCIMGPFLYGWYGLMHRYAPGDSFLGAVSKALFEQLTLEPMCIVGYMIYDGV 192          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A0K9RZ65_SPIOL (Uncharacterized protein n=2 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RZ65_SPIOL)

HSP 1 Score: 75.9 bits (185), Expect = 4.890e-13
Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 0
Query:   81 YQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSL-IKCLFEQLTLEPCCIIMYIAYDAVICR-RGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFS 247
            Y  QL +HPL ++AITAG++   +D +AQ +S           QF RLF   +YG    GPF +  ++ M           ++  K L EQLT  P   + ++ Y  ++   R W   +  +   + P+   +  FW   N+ NY      LRV+F +L +  W I+ +
Sbjct:   12 YLLQLQIHPLRTKAITAGVLAGCSDFTAQKISG------IKRIQFRRLFLIMIYGFFYSGPFGHFLHKVMDKIFKGKKGNTTVGQKVLLEQLTASPWNNMFFMMYYGLVVEGRSWSLVKSKIKKDYPPVQLTSWKFWPIVNWVNYQYMPLQLRVLFHSLIASCWAIFLN 174          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A2G5CC30_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CC30_AQUCA)

HSP 1 Score: 75.5 bits (184), Expect = 6.240e-13
Identity = 45/169 (26.63%), Postives = 79/169 (46.75%), Query Frame = 0
Query:   81 YQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHT-YGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICR-RGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFS 247
            Y  QL LHPL ++A+TAG++  ++D  AQ LS        H+ Q  RL    L+G    GP  +  ++ +   +    D      K L EQ+T  P   +M++AY  ++   R W+  R  +  ++  +   + +FW    + N+       RV+F +  +  W I+ +
Sbjct:    8 YMLQLQLHPLRTKAVTAGVLAGVSDSVAQKLSG------IHKLQLKRLLLKVLFGFAYFGPVGHYLHKFLDKIFKGRKDKSTVAKKVLLEQITSSPLNNLMFLAYYGIVVEGRPWMQVRSKIKKEYPSVQLTSWMFWPIVGWINHLYMPLQFRVIFHSFVACCWGIFLN 170          
BLAST of Gcaud2070.t1 vs. uniprot
Match: A0A7C8YES2_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YES2_OPUST)

HSP 1 Score: 75.5 bits (184), Expect = 6.770e-13
Identity = 52/169 (30.77%), Postives = 77/169 (45.56%), Query Frame = 0
Query:   81 YQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMH-TYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAY-DAVICRRGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFS 247
            Y+ QL LHPL ++AITAG++   +D +AQ +S           QF RL    LYG    GPF +  +  M  T+      +    K L EQLT  P   + ++ Y   V+  R W   R  +   +  +   +  FW   N  NY      LRV+F +L +  W I+ +
Sbjct:   12 YRLQLQLHPLRTKAITAGVLAGCSDFAAQKISG------IKRLQFRRLVLLMLYGFFYSGPFGHFLHTVMDKTFKGKTGKKTVGKKVLLEQLTASPWNNLFFMMYYGLVVDGRSWTMVRSKIRKDYPSVQLTSWRFWPLVNLVNYQYMPLQLRVLFHSLIASCWAIFLN 174          
BLAST of Gcaud2070.t1 vs. uniprot
Match: UPI00125CD408 (peroxisomal membrane protein PMP22 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125CD408)

HSP 1 Score: 73.9 bits (180), Expect = 2.480e-12
Identity = 52/171 (30.41%), Postives = 80/171 (46.78%), Query Frame = 0
Query:   81 YQRQLHLHPLSSRAITAGIIFFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAMHTYGPADDLQGSLI---KCLFEQLTLEPCCIIMYIAYDAVICR-RGWLSTRKTLATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFS 247
            Y  QL+LHPL ++AITAG++   +DV AQ +S           Q  RL   +LYG V  GPF +  ++ M +       QGS     K L EQLT  P   ++++ Y  ++   R W   +  +   +  +      FW    + NY      LRV+F N+ +  W I+ +
Sbjct:   12 YLLQLYLHPLRTKAITAGVLVGCSDVVAQKISG------VKRLQLKRLLLLALYGFVYSGPFGHFLHKLMDSL--FQGKQGSKTVAKKVLLEQLTASPWNNMLFMVYYGLVVEGRPWSLVKSKVLKDYPSVQLTAWKFWPIVGWINYQYLPLQLRVLFHNIVASCWAIFLN 174          
The following BLAST results are available for this feature:
BLAST of Gcaud2070.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYH5_9FLOR1.470e-15877.58PXMP2/4 family protein 4 n=1 Tax=Gracilariopsis ch... [more]
R7QG39_CHOCR4.410e-9264.49Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTV4_PORUM9.820e-5854.40Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YZM9_PORPP6.230e-5246.39Protein Mpv17 n=1 Tax=Porphyridium purpureum TaxID... [more]
A0A5J4YZN3_PORPP7.780e-3837.86PXMP2/4 family protein 2 n=1 Tax=Porphyridium purp... [more]
A0A7S0XJ68_9RHOD1.910e-3149.58Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A0K9RZ65_SPIOL4.890e-1328.99Uncharacterized protein n=2 Tax=Chenopodioideae Ta... [more]
A0A2G5CC30_AQUCA6.240e-1326.63Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
A0A7C8YES2_OPUST6.770e-1330.77Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
UPI00125CD4082.480e-1230.41peroxisomal membrane protein PMP22 n=2 Tax=Ipomoea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 190..247
e-value: 2.4E-12
score: 46.8
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 76..255
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 207..226
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 227..231
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 188..206
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..35
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 232..250
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 167..187
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 251..280
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..166
NoneNo IPR availableTMHMMTMhelixcoord: 128..147
NoneNo IPR availableTMHMMTMhelixcoord: 35..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_917_length_16159_cov_4.533047contigNODE_917_length_16159_cov_4.533047:4845..5687 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2070.t1Gcaud2070.t1Gracilaria caudata M_176_S67 malemRNANODE_917_length_16159_cov_4.533047 4845..5687 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2070.t1 ID=Gcaud2070.t1|Name=Gcaud2070.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MTVPIAAMHAAQKGRLPNPAVHSSIRRKCRFPRRSLGFLLLITVFVVVLY
DVVPSLIDASYVSSFHPHEVRRISRRTLRLYQRQLHLHPLSSRAITAGII
FFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAM
HTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTL
ATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNV
NRPSAQPAKFLNHDRRSAPSTPRRRSSNSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22