Gcaud2052.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2052.t1
Unique NameGcaud2052.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length117
Homology
BLAST of Gcaud2052.t1 vs. uniprot
Match: A0A2V3J4Z2_9FLOR (Calvin cycle protein CP12, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4Z2_9FLOR)

HSP 1 Score: 154 bits (388), Expect = 2.910e-46
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 0
Query:    1 MAFVSSLSLAARARSPVVAKCSSFRGASVRAAPARRAHLVMNLDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            MAFV+S+S+A+RA      KCSSFRG   R A   R  L+MNLDTIQ KIQEE++KA+A T +FG+ SKEAA+AWD+VEELEAEASHMK  KG PDPLEE+CED+P+ADECRVYDN
Sbjct:    1 MAFVNSVSVASRAPVFSPLKCSSFRGVQFRVASTPRPALLMNLDTIQTKIQEEIKKAEAATAQFGKSSKEAALAWDIVEELEAEASHMKAKKGTPDPLEEYCEDAPDADECRVYDN 116          
BLAST of Gcaud2052.t1 vs. uniprot
Match: R7Q2J1_CHOCR (CP12 protein, chloroplast, involves in the regulation of CO2 assimilation (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2J1_CHOCR)

HSP 1 Score: 140 bits (354), Expect = 6.710e-41
Identity = 78/117 (66.67%), Postives = 94/117 (80.34%), Query Frame = 0
Query:    1 MAFVSSLSLAARARSPVVAKCSSFRGASVR-AAPARRAHLVMNLDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            MAFVSS+S+A R  S V    SSF+G+S+R   P  R  L MNLDTIQVKIQEEM+KA+  T++FG+ SKEAA+AWDVVEELEAEASH+K  KG  DPLE+FCE+SPEADECRVY++
Sbjct:   15 MAFVSSVSVAVRPAS-VTPAVSSFKGSSLRWTTPKPRVALSMNLDTIQVKIQEEMKKAQDATQQFGKGSKEAALAWDVVEELEAEASHLKANKGSNDPLEKFCEESPEADECRVYED 130          
BLAST of Gcaud2052.t1 vs. uniprot
Match: A0A1X6NM38_PORUM (CP12 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM38_PORUM)

HSP 1 Score: 108 bits (270), Expect = 2.580e-28
Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = 0
Query:    3 FVSSLSLAARARSPVVAKC--SSFRGASVRAAPARRAHLVMNLDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            FVS ++  + AR    A C  SSF GA+V AAP  RA   M +  IQ  IQ E+ KAK  ++KFG+ SKEAA AWD VEELEAEASH K A+ K DPLE +CED PEADECR Y++
Sbjct:    4 FVSGVAAVSSARRAPSAVCTRSSFAGAAVVAAPVVRA--TMRMSNIQETIQTEIAKAKEASDKFGKTSKEAAAAWDAVEELEAEASHQKNAE-KKDPLEAYCEDVPEADECRTYED 116          
BLAST of Gcaud2052.t1 vs. uniprot
Match: A0A7S1TPK3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TPK3_9RHOD)

HSP 1 Score: 103 bits (257), Expect = 1.990e-26
Identity = 61/116 (52.59%), Postives = 77/116 (66.38%), Query Frame = 0
Query:    1 MAFVSSLSLAARARSPVVAKCSSFRGASVRAAPARRAHLVMNLDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            MAFVS+      A+S  VA C    G S   + ARR   V+ +  +Q KI   M++A+  T+ +G+ SKEAA+AWD VEELEAEASH K A+ K DPLE +CED+PEADECR YDN
Sbjct:    1 MAFVSTSGAVVSAKSARVAAC----GQSGTRSVARR---VVMMSDLQGKINAAMKEAEEATKTYGKTSKEAAVAWDTVEELEAEASHQKSAEVKKDPLEAYCEDAPEADECRTYDN 109          
BLAST of Gcaud2052.t1 vs. uniprot
Match: A0A5J4YIM3_PORPP (Calvin cycle protein CP12, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIM3_PORPP)

HSP 1 Score: 97.1 bits (240), Expect = 3.630e-24
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 0
Query:   48 VKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            VKI + ++ A+  T KFG+ SKEAA+AWD VEELEAEASH K +  K DPLEE+C+D+PEADECR YDN
Sbjct:   15 VKISDAIKGAEEATSKFGKGSKEAAVAWDTVEELEAEASHQKASNAKKDPLEEYCDDAPEADECRTYDN 83          
BLAST of Gcaud2052.t1 vs. uniprot
Match: Q2PC90_GALSU (Small chloroplast protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q2PC90_GALSU)

HSP 1 Score: 95.5 bits (236), Expect = 5.300e-23
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0
Query:   50 IQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            IQE ++KA+  T+KFGRDSKEAA AWD VEEL+AEASH +V + K DPLE FC++SPEA+ECRVYDN
Sbjct:   64 IQESIKKAEEATKKFGRDSKEAAAAWDAVEELDAEASHQRVRQ-KTDPLETFCDESPEAEECRVYDN 129          
BLAST of Gcaud2052.t1 vs. uniprot
Match: A0A7S0ZJ74_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJ74_9RHOD)

HSP 1 Score: 89.4 bits (220), Expect = 9.280e-21
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 0
Query:    1 MAFVSSLSLAARARSPVVAKCSSFRGASVRAAPARRAH-LVMNLDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEA 108
            MAFVS+ S+     S   A C S    S RAA A+R   L+M    +Q +I+  M +A+A + KFG+ SKEAA AWD VEELEAEASH K +  K DPLEE+CEDSPEA
Sbjct:   10 MAFVSAASVFVSGVSSGRAVCVS----SQRAAVAKRGSVLMMAAPDLQERIKAAMAEAEAASAKFGKSSKEAANAWDTVEELEAEASHQKASTVKKDPLEEYCEDSPEA 114          
BLAST of Gcaud2052.t1 vs. uniprot
Match: A0A846AAI2_9CYAN (CP12 domain-containing protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AAI2_9CYAN)

HSP 1 Score: 84.7 bits (208), Expect = 2.060e-19
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 0
Query:   43 LDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            +  IQ +I++E E+A+   ++ G DS E A+AWD VEEL+AEASH + ++ K    EE+CED+P+ADECR+YDN
Sbjct:    1 MSDIQSQIEQERERARTACQETGDDSAECAVAWDTVEELQAEASHQRSSQKKKTSFEEYCEDNPDADECRIYDN 74          
BLAST of Gcaud2052.t1 vs. uniprot
Match: Q9SMI6_CYAPA (CP12 domain-containing protein (Fragment) n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q9SMI6_CYAPA)

HSP 1 Score: 82.4 bits (202), Expect = 2.250e-18
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = 0
Query:   45 TIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            +IQ +IQ+ + +A+A+ E+ G  SKEA +AWD VEELEAE SH K A+ K DPL+EFC+++PE DECR+Y++
Sbjct:   15 SIQERIQKAISQARAVAEEKGATSKEARVAWDEVEELEAELSHQK-AQPKADPLQEFCKENPETDECRLYED 85          
BLAST of Gcaud2052.t1 vs. uniprot
Match: K9SFT8_9CYAN (CP12 domain-containing protein n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SFT8_9CYAN)

HSP 1 Score: 82.0 bits (201), Expect = 2.310e-18
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   43 LDTIQVKIQEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEEFCEDSPEADECRVYDN 116
            +  IQ KIQEE+E A+   +  G DSKE A AWD VEEL+AEASH +  K K + LE+FC+D+P+A ECRVYD+
Sbjct:    1 MSNIQNKIQEELESAREACDTTGADSKECAAAWDAVEELQAEASHQREEKPK-NSLEQFCDDNPDAAECRVYDD 73          
The following BLAST results are available for this feature:
BLAST of Gcaud2052.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4Z2_9FLOR2.910e-4668.10Calvin cycle protein CP12, chloroplastic n=1 Tax=G... [more]
R7Q2J1_CHOCR6.710e-4166.67CP12 protein, chloroplast, involves in the regulat... [more]
A0A1X6NM38_PORUM2.580e-2856.90CP12 domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7S1TPK3_9RHOD1.990e-2652.59Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A5J4YIM3_PORPP3.630e-2465.22Calvin cycle protein CP12, chloroplastic n=1 Tax=P... [more]
Q2PC90_GALSU5.300e-2370.15Small chloroplast protein n=1 Tax=Galdieria sulphu... [more]
A0A7S0ZJ74_9RHOD9.280e-2153.21Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A846AAI2_9CYAN2.060e-1951.35CP12 domain-containing protein n=1 Tax=Leptolyngby... [more]
Q9SMI6_CYAPA2.250e-1855.56CP12 domain-containing protein (Fragment) n=1 Tax=... [more]
K9SFT8_9CYAN2.310e-1856.76CP12 domain-containing protein n=1 Tax=Pseudanabae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availablePFAMPF02672CP12coord: 46..115
e-value: 3.3E-25
score: 88.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..116
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
IPR003823CP12 domainSMARTSM01093CP12_2coord: 46..116
e-value: 1.3E-26
score: 104.4
IPR039314Calvin cycle protein CP12-likePANTHERPTHR33921CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTICcoord: 37..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:16983..17424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2052.t1Gcaud2052.t1Gracilaria caudata M_176_S67 malemRNANODE_795_length_17855_cov_4.297850 16983..17424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2052.t1 ID=Gcaud2052.t1|Name=Gcaud2052.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=117bp
MAFVSSLSLAARARSPVVAKCSSFRGASVRAAPARRAHLVMNLDTIQVKI
QEEMEKAKAITEKFGRDSKEAAIAWDVVEELEAEASHMKVAKGKPDPLEE
FCEDSPEADECRVYDN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003823CP12_dom
IPR039314CP12-like