Gcaud2044.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2044.t1
Unique NameGcaud2044.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Homology
BLAST of Gcaud2044.t1 vs. uniprot
Match: A0A2V3J3S1_9FLOR (30S ribosomal protein S6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3S1_9FLOR)

HSP 1 Score: 276 bits (706), Expect = 9.880e-92
Identity = 143/210 (68.10%), Postives = 167/210 (79.52%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIRKPITDAVKPIPDIDQPPPRGGRLDPNDPEYALQKFLEEYERDFGKKEEDEGDK---ELLDIDDVSSVPQTQASGEVNEVVAGLKAWSKSEKPKKDHSLSWLSGLKGQPS 207
            MPYYE+LCLA G L RKELGSLLHKTCRAF+DNGA VTRI PLGATGNGPRDLAYRIRINQVS+HKGFFVN CAFASP+ LAEV RQLKVDER+LRH+AIRKP TDAVKPIPDIDQPP     +  NDPE+AL++FL E+ERD   KE ++  K   E L   + ++  +   +G++NEVVA LKAWS++EKP  D SL+WLS LK  P+
Sbjct:    1 MPYYEVLCLASGKLGRKELGSLLHKTCRAFIDNGATVTRISPLGATGNGPRDLAYRIRINQVSHHKGFFVNVCAFASPKALAEVERQLKVDERMLRHIAIRKPTTDAVKPIPDIDQPPRVKTGVSKNDPEHALRQFLVEHERDLAVKEYEQTRKNVREALADGEHTAALRGGENGKMNEVVASLKAWSEAEKPNSDPSLNWLSDLKRNPT 210          
BLAST of Gcaud2044.t1 vs. uniprot
Match: M2XXE9_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XXE9_GALSU)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-18
Identity = 63/193 (32.64%), Postives = 98/193 (50.78%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIRKPITDAVKPIPDIDQPPPRGGRLDPNDPEYALQKFLEEYERDFGKKEE---DEGDKELLDIDDVSSVPQTQASGEVNEVVAGLKAWSKSEKP 190
            MPYYEL CL + +LPR+EL   + KT    MD   ++TRI PL +     R+LAY I    V Y    F+ +  FA    + +++++LK D  +LR   +R+ + DAV      ++  PR   L   DP ++L+KFL+    D  +KE        +E     D  S  +T   G ++++   L+   KS+KP
Sbjct:    1 MPYYELFCLFRTDLPRQELFQSVKKTAERLMDADGVITRIDPLAS-----RELAYDIVRKGVRYETAHFIQYRVFAPSGNIYDLAQKLKYDNSILRFKFLRRRLEDAVNHSNPFERILPRQN-LPKTDPAFSLEKFLQ----DLHEKEPLGYRYASRETFGETDQLSAEETPNEGLIDDI---LRTLEKSQKP 180          
BLAST of Gcaud2044.t1 vs. uniprot
Match: I0YS97_COCSC (Mitochondrial ribosomal protein S6 (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YS97_COCSC)

HSP 1 Score: 64.3 bits (155), Expect = 3.880e-10
Identity = 34/102 (33.33%), Postives = 54/102 (52.94%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIRK 102
            MP YEL C+A+  L R E   L+     A +  G ++T I+  G      R+LAY IR   +  ++ F       A+P  L ++   LKVD+RV+R++ +R+
Sbjct:    1 MPLYELFCMARPALARTEASQLMRNAASAVLSKGGLLTDIKSYGQ-----RELAYEIRRPGMKINEAFMWQLDFAAAPPVLKDLEHLLKVDDRVVRYVILRR 97          
BLAST of Gcaud2044.t1 vs. uniprot
Match: A0A2P6TP53_CHLSO (Mitochondrial ribosomal S6 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP53_CHLSO)

HSP 1 Score: 64.7 bits (156), Expect = 7.280e-10
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFF--VNFCAFASPQTLAEVSRQLKVDERVLRHLAIRK 102
            MP+YEL  LAK  L +++L  +L    +  M++G +VT IR  G      R LAY IR     Y +     VNF A   P TL E+   L+VDER+LR + +++
Sbjct:    1 MPFYELFALAKPGLGKQQLAQILRAVGQQVMEHGGVVTDIRSYGE-----RRLAYDIRQPGARYSEAAMWQVNFAA--KPTTLQELDHTLRVDERMLRWMVLKR 97          
BLAST of Gcaud2044.t1 vs. uniprot
Match: E1ZC20_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZC20_CHLVA)

HSP 1 Score: 64.3 bits (155), Expect = 1.130e-9
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIRK 102
            MP YEL  LAK  L +K + S++       M+ G +VT IR  G      R LAY IR   V + +         A+P TL E+   L+VDER+LR L +++
Sbjct:    1 MPLYELFALAKPQLGKKAIASIMKAVASKVMEQGGVVTDIRSYGE-----RKLAYDIRQPGVRHKEAAMWQINFAANPATLPELDHTLRVDERMLRWLVLKR 97          
BLAST of Gcaud2044.t1 vs. uniprot
Match: A0A3C2DXP2_9PROT (30S ribosomal protein S6 (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3C2DXP2_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-7
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIR 101
            MPYYE + +A+ ++      +L  K       NG  V +    G      R LAYRI+ N+    KG +  F   ASPQT+ E+ R +++DE +LR+L +R
Sbjct:    1 MPYYESVFIARQDVSASAAETLADKFADLLKTNGGAVAKREYWGL-----RPLAYRIKKNK----KGHYFLFNLEASPQTIQEMERNMRLDEDILRYLTLR 92          
BLAST of Gcaud2044.t1 vs. uniprot
Match: A0A258XBQ0_9PROT (30S ribosomal protein S6 n=1 Tax=Alphaproteobacteria bacterium 16-39-46 TaxID=1970490 RepID=A0A258XBQ0_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 2.840e-7
Identity = 34/101 (33.66%), Postives = 55/101 (54.46%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIR 101
            MP YE + LA+ +L + +   L  K      +NG  VT++   G      R LAYRI+ N+    KG++      A+P+ +AE+ R +++DE +LR L +R
Sbjct:    1 MPLYECVFLARQDLTQSQSEGLAQKFSELLQNNGGKVTKVEHWGL-----RQLAYRIKKNR----KGYYHLMNIEATPEVVAEMERNMRLDEDMLRFLTVR 92          
BLAST of Gcaud2044.t1 vs. uniprot
Match: A0A2E9WU07_9PROT (30S ribosomal protein S6 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9WU07_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 6.590e-7
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIRKPITDAVKPIPDI 114
            MPYYE + +A+ ++      +L  K       NG  V +    G      R LAYRI+ N+    KG +  F   ASPQT+ E+ R +++DE +LR+L +R    D ++  P I
Sbjct:    1 MPYYESVFIARQDVSASXAETLADKFADLLKTNGGAVAKREYWGL-----RPLAYRIKKNK----KGHYXLFNLEASPQTIQEMERNMRLDEDILRYLTLR---IDEIEEAPSI 102          
BLAST of Gcaud2044.t1 vs. uniprot
Match: A0A6M8VPX6_9PROT (30S ribosomal protein S6 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VPX6_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 1.760e-6
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAI 100
            M +YE + + + +L  K++  L     +   DNG  V R+   G      R LAYRIR N+    KG +V     A+P  +AE+ RQ+++ E +LR +++
Sbjct:    1 MSFYETVFIVRQDLSEKQVEGLTSDYSKIIADNGGKVVRVEQWGL-----RTLAYRIRKNR----KGHYVLMHIDAAPAAVAEMERQMRLSEDILRFMSV 91          
BLAST of Gcaud2044.t1 vs. uniprot
Match: F5L8F7_CALTT (30S ribosomal protein S6 n=1 Tax=Caldalkalibacillus thermarum (strain TA2.A1) TaxID=986075 RepID=F5L8F7_CALTT)

HSP 1 Score: 53.1 bits (126), Expect = 5.720e-6
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 0
Query:    1 MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAIRK 102
            M  YEL+ + + +L  +   +++ +      DNG  V ++  +G      R LAY I      Y+ G++V     ++P  +AE+ RQL++++ V+RHL +R+
Sbjct:    1 MRAYELMYIVRPDLDEESTKAVIERFQNVIKDNGGEVEKVDEMGK-----RRLAYEIE----GYNDGYYVVVNFKSNPDLVAELERQLRLNDNVIRHLVVRE 93          
The following BLAST results are available for this feature:
BLAST of Gcaud2044.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2V3J3S1_9FLOR9.880e-9268.1030S ribosomal protein S6 n=1 Tax=Gracilariopsis ch... [more]
M2XXE9_GALSU1.180e-1832.64Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
I0YS97_COCSC3.880e-1033.33Mitochondrial ribosomal protein S6 (Fragment) n=1 ... [more]
A0A2P6TP53_CHLSO7.280e-1038.46Mitochondrial ribosomal S6 n=1 Tax=Chlorella sorok... [more]
E1ZC20_CHLVA1.130e-937.25Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A3C2DXP2_9PROT1.400e-734.6530S ribosomal protein S6 (Fragment) n=1 Tax=Rhodos... [more]
A0A258XBQ0_9PROT2.840e-733.6630S ribosomal protein S6 n=1 Tax=Alphaproteobacter... [more]
A0A2E9WU07_9PROT6.590e-733.3330S ribosomal protein S6 n=1 Tax=Rhodospirillaceae... [more]
A0A6M8VPX6_9PROT1.760e-632.0030S ribosomal protein S6 n=1 Tax=Proteobacteria ba... [more]
F5L8F7_CALTT5.720e-628.4330S ribosomal protein S6 n=1 Tax=Caldalkalibacillu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000529Ribosomal protein S6PFAMPF01250Ribosomal_S6coord: 4..101
e-value: 1.2E-13
score: 51.1
IPR000529Ribosomal protein S6PANTHERPTHR21011MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6coord: 4..115
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3D3.30.70.60coord: 1..121
e-value: 4.5E-26
score: 92.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..174
NoneNo IPR availablePANTHERPTHR21011:SF128S RIBOSOMAL PROTEIN S6, MITOCHONDRIALcoord: 4..115
NoneNo IPR availableCDDcd15465bS6_mitocoord: 4..102
e-value: 2.08318E-24
score: 90.2845
IPR020814Ribosomal protein S6, plastid/chloroplastHAMAPMF_00360Ribosomal_S6coord: 1..104
score: 11.272373
IPR035980Ribosomal protein S6 superfamilySUPERFAMILY54995Ribosomal protein S6coord: 1..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:3205..3828 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2044.t1Gcaud2044.t1Gracilaria caudata M_176_S67 malemRNANODE_795_length_17855_cov_4.297850 3205..3828 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2044.t1 ID=Gcaud2044.t1|Name=Gcaud2044.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGP
RDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAI
RKPITDAVKPIPDIDQPPPRGGRLDPNDPEYALQKFLEEYERDFGKKEED
EGDKELLDIDDVSSVPQTQASGEVNEVVAGLKAWSKSEKPKKDHSLSWLS
GLKGQPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000529Ribosomal_S6
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR020814Ribosomal_S6_plastid/chlpt
IPR035980Ribosomal_S6_sf