Gcaud2033.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2033.t1
Unique NameGcaud2033.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Homology
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A2V3J031_9FLOR (SNF1-related protein kinase regulatory subunit beta-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J031_9FLOR)

HSP 1 Score: 307 bits (786), Expect = 4.960e-105
Identity = 154/173 (89.02%), Postives = 161/173 (93.06%), Query Frame = 0
Query:    6 PAPE-PDRVVEPPMAPPERFDDDIPAPAMPTAGASARPKSPVVNGTFE-KGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPKNKQNTARLSEQRNKQAGMSAPKHKRCCIS 176
            PAP+ P   VE P  PPER+D+D+PAPAMPTAGAS RPKSPVV GTFE KGDSDD+EVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGA E+TMNNIRVIRGPPKNKQNTARLSEQRNKQAGMSAPK K+CCIS
Sbjct:    4 PAPQTPSPQVEVP--PPERYDEDVPAPAMPTAGASVRPKSPVVYGTFEEKGDSDDDEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGASEDTMNNIRVIRGPPKNKQNTARLSEQRNKQAGMSAPKPKKCCIS 174          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A1X6NYM0_PORUM (AMPK1_CBM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYM0_PORUM)

HSP 1 Score: 207 bits (526), Expect = 5.970e-65
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 0
Query:   26 DDIPAPAMPTAGA-SARPKSPVVNGTFEKGDSDDE-EVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPK 147
            +D  A  +PT  A S +PKSPVV+GT+E  +     EVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVG +EETMNN+RVIRGPPK
Sbjct:   52 EDAAAVGVPTGDAGSMQPKSPVVHGTYEAAEEXXXXEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGDDEETMNNVRVIRGPPK 175          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A1X6NYD2_PORUM (AMPK1_CBM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYD2_PORUM)

HSP 1 Score: 200 bits (508), Expect = 3.830e-63
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 0
Query:   41 RPKSPVVNGTFEKGDSDDE-EVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPK 147
            +PKS VV+GT+E  +     EVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVG +EETMNN+RVIRGPPK
Sbjct:    2 QPKSAVVHGTYEAAEEXXXXEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGDDEETMNNVRVIRGPPK 109          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A7S0ZJP0_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJP0_9RHOD)

HSP 1 Score: 198 bits (504), Expect = 4.670e-61
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 0
Query:   22 ERFDDDIPAPAMPTAG-ASARPKSPVVNGTFEKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPP 146
            E   DD    AM  AG A+  P  PV++GT+++ D ++EEVMVKTEFVWADGAE+DVKLSG+WNGWMPVQMYHEGGGMWSVVTPVP GTHEFKFVVDGEW+HSTRHPTVG +EETMNNIRVIRGPP
Sbjct:   98 EMVYDDTADTAMAGAGMAAGGPGVPVMHGTYDRPD-EEEEVMVKTEFVWADGAEYDVKLSGSWNGWMPVQMYHEGGGMWSVVTPVPTGTHEFKFVVDGEWRHSTRHPTVGDDEETMNNIRVIRGPP 222          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A5J4Z3V9_PORPP (SNF1-related protein kinase regulatory subunit beta-2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3V9_PORPP)

HSP 1 Score: 191 bits (486), Expect = 1.310e-58
Identity = 86/101 (85.15%), Postives = 97/101 (96.04%), Query Frame = 0
Query:   45 PVVNGTFEKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGP 145
            PV++GT+E+ D ++EEVMVKTEFVWADGAE+DVKLSG+WNGWMPVQMYHEGGGMWSVVTPVP GTHEFKF+VDGEW+HSTRHPTVG +EETMNNIRVIRGP
Sbjct:  101 PVMHGTYERPD-EEEEVMVKTEFVWADGAENDVKLSGSWNGWMPVQMYHEGGGMWSVVTPVPTGTHEFKFIVDGEWRHSTRHPTVGDDEETMNNIRVIRGP 200          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A1X6NKY1_PORUM (AMPK1_CBM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKY1_PORUM)

HSP 1 Score: 187 bits (476), Expect = 2.560e-58
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0
Query:   52 EKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPK 147
            E  D  +EEVMVKTEFVWADGA HDV+LSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEW+HSTRHPTVG +E TMNNIRVIRGPPK
Sbjct:    5 EYADPGEEEVMVKTEFVWADGANHDVRLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWRHSTRHPTVGDDEMTMNNIRVIRGPPK 100          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A2V3IVS0_9FLOR (SNF1-related protein kinase regulatory subunit beta-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVS0_9FLOR)

HSP 1 Score: 191 bits (485), Expect = 9.300e-58
Identity = 96/158 (60.76%), Postives = 118/158 (74.68%), Query Frame = 0
Query:   20 PPERFDDDIPAPAMPTAGASARPKSPVVNGTFEKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPKNKQNTARLSEQRNKQAGMSAPKH--KRCCI 175
            PPE+ +D+            A+  +P V+ T+EK   ++EEVMVKTEFVWADGAE+DV+LSG+WNGWM +QMYHEGGGMWSVVTPVPAG HEFKFVVDGEW+HSTRHPTVG +E TMNN+R+IRGPP+NK+   R  +  N+ A  + P    K CCI
Sbjct:  136 PPEQVEDET--------KPKAKGNAPFVHNTYEKN-QEEEEVMVKTEFVWADGAENDVQLSGSWNGWMTIQMYHEGGGMWSVVTPVPAGIHEFKFVVDGEWRHSTRHPTVGDDEATMNNVRMIRGPPRNKK---REDDGANRPADDTPPDAVPKGCCI 281          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A7S0BNB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNB0_9RHOD)

HSP 1 Score: 187 bits (475), Expect = 5.690e-57
Identity = 91/141 (64.54%), Postives = 103/141 (73.05%), Query Frame = 0
Query:   35 TAGASARPKSPVVNGTFE-KGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPKNKQNTARLSEQRNKQAGMSAPKHKRCC 174
            T     RP  P+V G    +    + EV+VKTEFVWADGAE D KL+G+WNGWMP+QMYHEGGGMWSVVTPVPAGTHEFKF+VDGEWKHSTRHPTVG +EE MNNIRVI+GPP      A + +Q   QA   A   KRCC
Sbjct:   89 TGPVEQRPHIPMVQGEHTVENPLGEGEVLVKTEFVWADGAEKDAKLAGSWNGWMPIQMYHEGGGMWSVVTPVPAGTHEFKFIVDGEWKHSTRHPTVGEDEENMNNIRVIKGPP-----PAYVEQQSAAQAEQGARPRKRCC 224          
BLAST of Gcaud2033.t1 vs. uniprot
Match: M2Y269_GALSU (AMPK1_CBM domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y269_GALSU)

HSP 1 Score: 151 bits (381), Expect = 2.700e-43
Identity = 65/91 (71.43%), Postives = 79/91 (86.81%), Query Frame = 0
Query:   56 SDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPP 146
            +D E+  V+TEFV+ADGA+ DV LSG WN W P+QMYHEGGG+WSVVT VP GTHEFKF+VDGEW+HSTRHPTVG +EE+ NN+RV++GPP
Sbjct:   66 TDLEKEGVRTEFVYADGAQEDVLLSGDWNNWTPIQMYHEGGGIWSVVTLVPPGTHEFKFIVDGEWRHSTRHPTVGIDEESKNNVRVVKGPP 156          
BLAST of Gcaud2033.t1 vs. uniprot
Match: A0A2V3IYZ1_9FLOR (Phosphoglucan phosphatase LSF1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYZ1_9FLOR)

HSP 1 Score: 139 bits (350), Expect = 3.520e-39
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 0
Query:   63 VKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWSVVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPP 146
            VKTEFV+ADGA+ DV+LSG WN W  +QM+HEGGGMWSVVTPVP G HEFKF+VDGEWKHS RHPT+G ++ ++NN+RV+   P
Sbjct:   13 VKTEFVYADGAKDDVQLSGDWNDWKAIQMFHEGGGMWSVVTPVPPGPHEFKFIVDGEWKHSNRHPTIGIDDTSLNNVRVVLPQP 96          
The following BLAST results are available for this feature:
BLAST of Gcaud2033.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J031_9FLOR4.960e-10589.02SNF1-related protein kinase regulatory subunit bet... [more]
A0A1X6NYM0_PORUM5.970e-6580.65AMPK1_CBM domain-containing protein n=1 Tax=Porphy... [more]
A0A1X6NYD2_PORUM3.830e-6386.11AMPK1_CBM domain-containing protein n=1 Tax=Porphy... [more]
A0A7S0ZJP0_9RHOD4.670e-6176.19Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z3V9_PORPP1.310e-5885.15SNF1-related protein kinase regulatory subunit bet... [more]
A0A1X6NKY1_PORUM2.560e-5888.54AMPK1_CBM domain-containing protein n=1 Tax=Porphy... [more]
A0A2V3IVS0_9FLOR9.300e-5860.76SNF1-related protein kinase regulatory subunit bet... [more]
A0A7S0BNB0_9RHOD5.690e-5764.54Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2Y269_GALSU2.700e-4371.43AMPK1_CBM domain-containing protein n=1 Tax=Galdie... [more]
A0A2V3IYZ1_9FLOR3.520e-3969.05Phosphoglucan phosphatase LSF1, chloroplastic n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032640AMP-activated protein kinase, glycogen-binding domainPFAMPF16561AMPK1_CBMcoord: 64..143
e-value: 1.6E-17
score: 63.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 54..142
e-value: 2.0E-20
score: 74.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR103435'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNITcoord: 20..139
NoneNo IPR availableCDDcd02859E_set_AMPKbeta_like_Ncoord: 64..142
e-value: 1.62611E-22
score: 83.8024
IPR030077SNF1 protein kinase subunit beta-2/beta-3PANTHERPTHR10343:SF84ALICORN, ISOFORM Acoord: 20..139
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 64..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4616_length_2125_cov_2.936578contigNODE_4616_length_2125_cov_2.936578:874..1780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1Gcaud2033.t1Gracilaria caudata M_176_S67 malemRNANODE_4616_length_2125_cov_2.936578 874..1780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2033.t1 ID=Gcaud2033.t1|Name=Gcaud2033.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MKAAPPAPEPDRVVEPPMAPPERFDDDIPAPAMPTAGASARPKSPVVNGT
FEKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWS
VVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPKNKQ
NTARLSEQRNKQAGMSAPKHKRCCIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032640AMPK1_CBM
IPR013783Ig-like_fold
IPR030077SIP2/GAL83
IPR014756Ig_E-set