Gcaud2008.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2008.t1
Unique NameGcaud2008.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length266
Homology
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A2V3IYS9_9FLOR (PHD-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYS9_9FLOR)

HSP 1 Score: 185 bits (469), Expect = 1.650e-53
Identity = 105/244 (43.03%), Postives = 135/244 (55.33%), Query Frame = 0
Query:    6 AAPHLVMYDDFLIEAYRTITFVPFATVSEQRGSIQKTAEHERQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLYNQHSRAATVANFRNVMLDIHNFPSLPLKLRFKMLDLFATKRAPPADHTPNGQLSVPHPPPRRPLRSLPPKERCKRMRTSSQPDLQNGSTSATDTGVPLVSNGLRVAPARNVVRLARDLQPVAHMLRNEQALHVLSVLETHFSS 249
            A P +V+ D F++EAY  +  VPFATV EQRGS  KT+EHER+D LYGRCRIC ++ R GE +LLCD CDRAFH+ CLHP LKD+PKG+WHC +C S   + +HSRA  VAN R V+ DI + P+LPLKLR K+L L A + +PP           P P    PL +L                                   L+   ARN++ L   L PVA  ++N  A   LS L    ++
Sbjct:    8 ARPQVVVLDGFVVEAYARMEHVPFATVREQRGSAPKTSEHERRDGLYGRCRICVATKR-GEQLLLCDGCDRAFHMTCLHPPLKDVPKGDWHCPDCVSRAAFFRHSRATAVANLRAVLHDISSRPTLPLKLRLKLLHLSAPE-SPPXXXXXXXXXXXPRPRAALPLHALXXXXXXX----XXXXXXXXXXXXXXXXXXXXXPTHLQTLRARNLITLTDQLLPVAQRMQNHSATDALSRLRARLTT 245          
BLAST of Gcaud2008.t1 vs. uniprot
Match: R7QG05_CHOCR (PHD-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG05_CHOCR)

HSP 1 Score: 101 bits (252), Expect = 2.580e-22
Identity = 73/193 (37.82%), Postives = 95/193 (49.22%), Query Frame = 0
Query:   63 RPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLYNQHSRAATVANFRNVMLDIHNFPSLPLKLRFKMLDL--------FATKRAP----PADHTPNGQLSVPHPPPRRPLRSLPPKERCKRMRTSSQPDLQNGSTSATDTGVPLVSNGLRVAPARNVV---RLARDLQPVAHMLRNEQALHVL 240
            + G  +LLCD CDRAFHI CL P    +PKGEWHC NCT    +  H RA  VA+ R V  DI   P LP KLR K+LDL        FA    P      D+T N   ++      RP+ SLP     KR+R   QP +   S       VP+  +  + +  +  +    L+RDL P+A  L N  A++ L
Sbjct:    4 KSGGQILLCDDCDRAFHINCLVPIPSPVPKGEWHCPNCTRYRNHTAHLRATAVASLRQVTEDIETRPHLPPKLRIKLLDLPAPVVTFTFAQPTLPIPLQALDNT-NCHTNLAS----RPVHSLPAN---KRLRKPPQPSVSPSSHLNVLDRVPVFKSVSQESILKRRIYLSNLSRDLAPLAARLGNAHAMNSL 188          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A7S2ZG68_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG68_9RHOD)

HSP 1 Score: 76.6 bits (187), Expect = 3.110e-12
Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   35 QRGSIQKTAEHERQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLYNQH--SRAATVANFRNVMLDIHNFPSLPLKLRFKML 140
            +   ++ +    +++E+Y  CRIC    R  + M+LCD+CDR FH+ CL+P L+ +P G+W C  C       QH  SR   + N   +  D+    +LP+KL  K+L
Sbjct:   28 EENGVKDSGTGGKKEEVYQNCRICLGM-RDFDEMILCDTCDRGFHLYCLNPPLESVPVGDWICPRCIRRERKKQHEVSRGKRIVN--RIREDVKLLRTLPVKLNAKLL 132          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A7S3E947_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E947_9RHOD)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-12
Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   35 QRGSIQKTAEHERQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLYNQH--SRAATVANFRNVMLDIHNFPSLPLKLRFKML 140
            +   ++ +    +++E+Y  CRIC    R  + M+LCD+CDR FH+ CL+P L+ +P G+W C  C       QH  SR   + N   +  D+    +LP+KL  K+L
Sbjct:   28 EENGVKDSGTGGKKEEVYQNCRICLGM-RDFDEMILCDTCDRGFHLYCLNPPLESVPVGDWICPRCIRRERKKQHEVSRGKRIVN--RIREDVKLLRTLPVKLNAKLL 132          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A7S0BDK6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDK6_9RHOD)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-11
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 0
Query:   47 RQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLYNQH--SRAATVANFRNVMLDIHNFPSLPLKLRFKML 140
            +++E+Y  CRIC    R  + M+LCD+CDR FH+ CL+P L+ +P G+W C  C       QH  SR   + N   +  D+    +LP+KL  K+L
Sbjct:   40 KKEEVYQNCRICLGM-RDFDEMILCDTCDRGFHLYCLNPPLESVPVGDWICPRCIRRERKKQHEVSRGKRIVN--RIREDMKLLRTLPVKLNAKLL 132          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A1S7HVY8_9SACH (JHD2 (YJR119C) n=3 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A1S7HVY8_9SACH)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-10
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 0
Query:   28 PFATVSEQRGSIQKTAEHERQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLY---NQHSRAATVANFRNV 121
            P + +S++  S Q   E E +D+    C +C  +N+P + M+LCDSCD+ FHI CL P L  IPKG+W C NC     Y    + +R  T+  F+N+
Sbjct:  234 PKSLLSDEEHSSQDEDELESEDD--EGCVVCSRNNKPTK-MILCDSCDKPFHIFCLSPPLTSIPKGDWICNNCIIGNGYYGFKEETRYYTLGEFKNM 327          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A7S0ZFV3_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFV3_9RHOD)

HSP 1 Score: 70.5 bits (171), Expect = 3.720e-10
Identity = 40/113 (35.40%), Postives = 55/113 (48.67%), Query Frame = 0
Query:   28 PFATVSEQRGSIQKTAEHERQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTS-ETLYNQHSRAATVANFRNVMLDIHNFPSLPLKLRFKM 139
            P AT + Q  S   T       E Y  CR+C  + + G+ +LLCD CDR FH+ CL P +++IP GEW CA C   E   N H   + +          H+  +L  K + KM
Sbjct:   22 PHATTAIQIQSPTTTHHRSGTFEYYANCRVCLGT-KDGDSILLCDKCDRGFHLHCLSPPVEEIPDGEWLCACCERLEKCRNYHVHVSALLTDSVSAHVSHDTANLHPKFKAKM 133          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A6F9DG63_9ASCI (Histone acetyltransferase KAT6 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DG63_9ASCI)

HSP 1 Score: 68.9 bits (167), Expect = 5.430e-10
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   55 CRIC--CSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSETLYNQHSRA 112
            C+ C  C+S   G+ +LLCD+CD+A+H+ C +P++KD P G W C +C  +TL+  HS A
Sbjct:  105 CKTCAVCASAEDGDSILLCDACDKAYHMSCHYPKVKDNPDGNWVCESCLEDTLHAPHSPA 164          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A830CEP2_9LAMI (Histone-lysine n-methyltransferase atxr6 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CEP2_9LAMI)

HSP 1 Score: 68.9 bits (167), Expect = 8.260e-10
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   32 VSEQRGSIQKTAEHERQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANCTSET 104
            VS + GS +++   E +++    C + C S +    +LLCD CDR FH+ CL P L  +PKG+W C +C++ T
Sbjct:   14 VSPELGSKKRSRSMEEEEDYSDVCCVKCGSGQRPAELLLCDKCDRGFHLFCLRPVLTAVPKGQWFCPSCSNHT 86          
BLAST of Gcaud2008.t1 vs. uniprot
Match: A0A7S0BDB7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDB7_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.030e-9
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   47 RQDELYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANC 100
            +++E+Y  CRIC    R  + M+LCD+CDR FH+ CL+P L+ +P G+W C  C
Sbjct:   40 KKEEVYQNCRICLGM-RDFDEMILCDTCDRGFHLYCLNPPLESVPVGDWICPRC 92          
The following BLAST results are available for this feature:
BLAST of Gcaud2008.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYS9_9FLOR1.650e-5343.03PHD-type domain-containing protein n=1 Tax=Gracila... [more]
R7QG05_CHOCR2.580e-2237.82PHD-type domain-containing protein n=1 Tax=Chondru... [more]
A0A7S2ZG68_9RHOD3.110e-1234.26Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E947_9RHOD3.660e-1234.26Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BDK6_9RHOD1.050e-1138.54Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1S7HVY8_9SACH1.290e-1039.18JHD2 (YJR119C) n=3 Tax=Zygosaccharomyces TaxID=495... [more]
A0A7S0ZFV3_9RHOD3.720e-1035.40Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A6F9DG63_9ASCI5.430e-1045.00Histone acetyltransferase KAT6 n=1 Tax=Phallusia m... [more]
A0A830CEP2_9LAMI8.260e-1038.36Histone-lysine n-methyltransferase atxr6 n=1 Tax=P... [more]
A0A7S0BDB7_9RHOD1.030e-946.30Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 54..101
e-value: 4.5E-10
score: 49.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 21..113
e-value: 9.1E-19
score: 69.6
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 54..102
e-value: 5.7E-11
score: 42.1
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 52..103
score: 10.291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..200
NoneNo IPR availablePANTHERPTHR10615:SF127REMODELING AND SPACING FACTOR 1coord: 53..104
NoneNo IPR availablePANTHERPTHR10615HISTONE ACETYLTRANSFERASEcoord: 53..104
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 55..100
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 52..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:85496..86293 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2008.t1Gcaud2008.t1Gracilaria caudata M_176_S67 malemRNANODE_5_length_105932_cov_4.447794 85496..86293 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2008.t1 ID=Gcaud2008.t1|Name=Gcaud2008.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MAAPLAAPHLVMYDDFLIEAYRTITFVPFATVSEQRGSIQKTAEHERQDE
LYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANC
TSETLYNQHSRAATVANFRNVMLDIHNFPSLPLKLRFKMLDLFATKRAPP
ADHTPNGQLSVPHPPPRRPLRSLPPKERCKRMRTSSQPDLQNGSTSATDT
GVPLVSNGLRVAPARNVVRLARDLQPVAHMLRNEQALHVLSVLETHFSSQ
QMRARAVGAMNKQPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD