Gcaud1996.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1996.t1
Unique NameGcaud1996.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Homology
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A2V3IYT6_9FLOR (Alba domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYT6_9FLOR)

HSP 1 Score: 127 bits (320), Expect = 3.820e-34
Identity = 70/120 (58.33%), Postives = 92/120 (76.67%), Query Frame = 0
Query:   34 QNGSTCRRIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPTKGHSSNPKAKIQIWLTRIEQPHDDNFTNNHSHSPADDAGDTNPRASS 153
            Q  S  RRIQVSREKRP+ FF+SLA+K L++++ +ELSGLGLAV NV+TIAE+LR +  A ID+I+TSLV+PTKGHS++ K KIQIWL+R E     N T+  + + +D AG+TNP  SS
Sbjct:   53 QRQSPPRRIQVSREKRPLSFFISLARKSLNANSTVELSGLGLAVSNVITIAEVLRADGRAHIDDIQTSLVEPTKGHSTSSKPKIQIWLSRAEPNAPANCTDKQAEAASDHAGNTNPPESS 172          
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A1X6PJ30_PORUM (Alba domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ30_PORUM)

HSP 1 Score: 92.8 bits (229), Expect = 4.600e-20
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0
Query:   41 RIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPTK-GHSSNPKAKIQIWLTRIEQ 126
            RIQVSREKRP++FF+ L+KKFL ++  +ELSGLGLAV  VVT+AE+L+      I  I TSLV   + G S+ PKAKIQIW+ + +Q
Sbjct:   91 RIQVSREKRPLNFFIGLSKKFLVNEEEVELSGLGLAVTTVVTVAEILKSSGYVDIVRIETSLVDMREEGRSTLPKAKIQIWIRKSDQ 177          
BLAST of Gcaud1996.t1 vs. uniprot
Match: K3ZAP5_SETIT (Alba domain-containing protein n=6 Tax=Paniceae TaxID=147428 RepID=K3ZAP5_SETIT)

HSP 1 Score: 74.7 bits (182), Expect = 4.220e-14
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 0
Query:   31 AHQQNGSTCRRIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPT---KGHSSNPKAKIQIWLTRIE 125
            A QQ      RIQVS  K+P+ F+V+LAKK++     +ELS LGLA+  VVTIAE+L+   +A   +IRTS V+ +   +GHS   KAKI+I L + E
Sbjct:   16 AQQQKPGAGNRIQVSSSKKPLFFYVNLAKKYMQQHGDVELSALGLAISTVVTIAEILKNNGLAVEKKIRTSTVEISDEMRGHSIQ-KAKIEIVLGKTE 112          
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A1E5VN35_9POAL (Alba domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VN35_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 5.940e-14
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 0
Query:   31 AHQQNGSTCRRIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPTKGHSSNP--KAKIQIWLTRIEQ 126
            A QQ   T  RIQVS  K+P+ F+V+LAK+++     +ELS LGLA+  VVTIAE+L+   +A   +IRTS V+ +      P  KAKI+I L + ++
Sbjct:   16 ARQQKADTGNRIQVSSSKKPLFFYVNLAKRYMQQHGSVELSALGLAISTVVTIAEILKNNGLAVEKKIRTSTVEISDEMRGRPIQKAKIEIVLGKTDK 113          
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A7S0T1G7_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T1G7_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 7.540e-14
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 0
Query:   30 AAHQQNGSTCRRIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTS---LVQPTKGHSSNPKAKIQIWLTRIEQPHD 129
            AAH Q       IQVS  K+P+ F+V+LAK+FL +   + LSGLG+AV  VVT+AE+L++  +A +  I TS   +V  T   +   KAKI+I LT+    H+
Sbjct:   45 AAHTQQQHPANLIQVSNTKKPLFFYVNLAKQFLGAHDTVHLSGLGMAVATVVTVAEILKKNGLAAVTRIGTSTVDMVDETNPDNEVQKAKIEIALTKTLNFHE 147          
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A835IL05_9MAGN (Alba domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IL05_9MAGN)

HSP 1 Score: 73.9 bits (180), Expect = 3.210e-13
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 0
Query:   13 DAVPENDPHQVVQIKQQAAHQQNGSTCRRIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLV---QPTKGHSSNPKAKIQIWLTRIE 125
            + + ++D + +V  ++ +    NG    RIQVS  K+P+ F+V+LAKK++     +ELS LG+A+  VVTIAE+L+   +A   +I TS V      KG     KAKI+IWL++ E
Sbjct:    9 EVIMKSDDNDIVNGRESSV---NGHKKNRIQVSNTKKPLFFYVNLAKKYMRLHEEVELSALGMAIATVVTIAEILKNNGLAIEKKILTSTVGMKDENKGKLIQ-KAKIEIWLSKSE 120          
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A5N5GX21_9ROSA (Alba domain-containing protein n=5 Tax=Maleae TaxID=721813 RepID=A0A5N5GX21_9ROSA)

HSP 1 Score: 72.4 bits (176), Expect = 3.510e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 0
Query:   35 NGSTCRRIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPTKGHSSNP--KAKIQIWLTRIEQ 126
            N +   RIQVS  K+PV F+V+LAK+++  +  +ELS LG+A+  VVTIAE+L+   +A    I+TS +   +     P  KAKI+I L + E+
Sbjct:   19 NKNNKNRIQVSNTKKPVFFYVNLAKRYMQQNNEVELSALGMAIATVVTIAEILKNNGLAVEKRIKTSTINMREDAGGRPIQKAKIEILLGKSEK 112          
BLAST of Gcaud1996.t1 vs. uniprot
Match: UPI0018AEFFEF (uncharacterized protein At2g34160-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEFFEF)

HSP 1 Score: 72.4 bits (176), Expect = 3.850e-13
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   41 RIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPTKGHSSNP--KAKIQIWLTRIE 125
            RIQVS  K+P++F+V+LAK+++ +   +ELS LG+A+  VVT+AE+L+   +AT  +I TS V  T G+      KAKI+I L + E
Sbjct:   25 RIQVSTNKKPLYFYVNLAKRYMQNYNEVELSALGMAIGTVVTVAEILKNNGLATEKKILTSTVGTTDGNKGRTVRKAKIEILLGKTE 111          
BLAST of Gcaud1996.t1 vs. uniprot
Match: A0A067GNN2_CITSI (Alba domain-containing protein n=3 Tax=Citrus TaxID=2706 RepID=A0A067GNN2_CITSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.880e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   41 RIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQPTKGHSSNP--KAKIQIWLTR 123
            RIQVS  K+P+ F+V+LAK+++     +ELS LG+A+  VVT+AE+L+   +A   +I TS V         P  KAKI+IWL +
Sbjct:   22 RIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEK 106          
BLAST of Gcaud1996.t1 vs. uniprot
Match: D2V826_NAEGR (Alba domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=D2V826_NAEGR)

HSP 1 Score: 71.2 bits (173), Expect = 7.150e-13
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   41 RIQVSREKRPVHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRTSLVQ-PTKGHSSNPKAKIQIWLTR 123
            +IQVS  K+ + F+V L+KKFL ++  IELSGLG A+  VV+ AE+L+ + +ATI +I+TS V   +K   S  KAKIQI+L +
Sbjct:   16 KIQVSATKQSLSFYVYLSKKFLKNNEEIELSGLGSAINTVVSCAEILKNQKLATISKIQTSTVPVSSKNEQSFQKAKIQIYLKK 99          
The following BLAST results are available for this feature:
BLAST of Gcaud1996.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYT6_9FLOR3.820e-3458.33Alba domain-containing protein n=1 Tax=Gracilariop... [more]
A0A1X6PJ30_PORUM4.600e-2056.32Alba domain-containing protein n=1 Tax=Porphyra um... [more]
K3ZAP5_SETIT4.220e-1446.94Alba domain-containing protein n=6 Tax=Paniceae Ta... [more]
A0A1E5VN35_9POAL5.940e-1443.88Alba domain-containing protein n=1 Tax=Dichantheli... [more]
A0A7S0T1G7_9CHLO7.540e-1442.72Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A835IL05_9MAGN3.210e-1338.79Alba domain-containing protein n=1 Tax=Coptis chin... [more]
A0A5N5GX21_9ROSA3.510e-1341.49Alba domain-containing protein n=5 Tax=Maleae TaxI... [more]
UPI0018AEFFEF3.850e-1344.83uncharacterized protein At2g34160-like n=1 Tax=Dio... [more]
A0A067GNN2_CITSI5.880e-1343.53Alba domain-containing protein n=3 Tax=Citrus TaxI... [more]
D2V826_NAEGR7.150e-1348.81Alba domain-containing protein n=2 Tax=Naegleria T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 42..92
e-value: 2.9E-6
score: 27.0
IPR036882Alba-like domain superfamilyGENE3D3.30.110.20coord: 39..145
e-value: 3.6E-23
score: 83.7
IPR036882Alba-like domain superfamilySUPERFAMILY82704AlbA-likecoord: 44..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..169
NoneNo IPR availablePANTHERPTHR31947:SF1DNA/RNA-BINDING PROTEIN ALBA 3coord: 31..126
IPR014560Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-relatedPANTHERPTHR31947DNA/RNA-BINDING PROTEIN ALBA 3coord: 31..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:56285..56893 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1Gcaud1996.t1Gracilaria caudata M_176_S67 malemRNANODE_5_length_105932_cov_4.447794 56285..56893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1996.t1 ID=Gcaud1996.t1|Name=Gcaud1996.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MTPSASVDTAVVDAVPENDPHQVVQIKQQAAHQQNGSTCRRIQVSREKRP
VHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRT
SLVQPTKGHSSNPKAKIQIWLTRIEQPHDDNFTNNHSHSPADDAGDTNPR
ASSPTPPNSHQANPSSQTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002775DNA/RNA-bd_Alba-like
IPR036882Alba-like_dom_sf
IPR014560UCP030333_Alba