Gcaud1991.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1991.t1
Unique NameGcaud1991.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length631
Homology
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BLAST of Gcaud1991.t1 vs. uniprot
Match: A0A2V3IJW1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJW1_9FLOR)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-12
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 0 
Query:  394 IRTIINDPSDAIPYFPVEGLPWFVGDLPSLEVVELYLNTEADTSICESLVYAVNNLPCLKSLTIQVWRTKLCEENVGGFRALLQMLEKS 482
            +R I +D S       VEGLP  +G LPSLEVVEL L+T+ D+ ICE L Y +  LP LK  T+QV  +KLC+ +   F+   + L  S
Sbjct:    4 VRKITSDSSGRPSTSQVEGLPLLIGGLPSLEVVELRLDTKVDSYICELLGYVMGWLPVLKVFTVQVSESKLCDGSASHFQQFFRSLISS 92
The following BLAST results are available for this feature:
BLAST of Gcaud1991.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJW1_9FLOR1.230e-1244.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 279..567
e-value: 2.3E-7
score: 31.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 244..517

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:36813..38705 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1991.t1Gcaud1991.t1Gracilaria caudata M_176_S67 malemRNANODE_5_length_105932_cov_4.447794 36813..38705 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1991.t1 ID=Gcaud1991.t1|Name=Gcaud1991.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=631bp
MSSEQRSEEAEEGANSSEHQPEATNESSHAGHDAPTSSPLPSMTDGVLQT
IGAHNGEPLSTVEWMMIKLLPQAATNHESCEQVLRVTRQSLRFDFILYDL
GLKPETKLLLQGRSSSSLMSAVRNVLYGFDQQCANELYATLSNINDAVCQ
FVCCSMLFVDKERDPFFTALDLDKVMNILSPQSLAVFAKMISFIRPAVQS
LRMSPVCDQMFVIVQEPLMQIVRATATSMRRLTVYLPDDQMVEVLRNARF
TLVALEELCLMMRGERIYHYNAPEASNAIHGLYARVSSICPRLKYVSLHN
GGAGSVPVVNMKWLPTSVDHIVNVRDTDLLRSVANCAGVRTITIHVANID
FGRFVLFEREGGFPQLERVNLVNCVLQEPKLQMHHASARLRACIRTIIND
PSDAIPYFPVEGLPWFVGDLPSLEVVELYLNTEADTSICESLVYAVNNLP
CLKSLTIQVWRTKLCEENVGGFRALLQMLEKSECELEHLRMPNMWACSSE
LYAFLESKGASLKTLDVKMHCGSCVNEETTSVLNWEDVVEVLRRLADSCP
RILNASVAESDVLQRALDTNRREFESCVSHEKGGKLKRMWEQVVLGFDRE
KVSCEILRDAMRDVFRERMRCADEGKKSWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf