Gcaud1956.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1956.t1
Unique NameGcaud1956.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Homology
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A2V3IVD0_9FLOR (Putative ribonuclease n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVD0_9FLOR)

HSP 1 Score: 266 bits (680), Expect = 7.260e-88
Identity = 128/199 (64.32%), Postives = 161/199 (80.90%), Query Frame = 0
Query:    1 MAVYIKAMRGVNSIDRVRLKKQVEIIRNTFLNGKFRQHDATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVGAVVSEIGLLGDEKTFPRSYL 199
            MA++I+AMR + ++DR  LKKQ+E++R+T L+GKFR HDATIILAT+AKVRRLNW Y ++R TTDVLSF L D+PRRK R  +  +KD+  L++ APFLDPNTGQL  S +  P +T DLGRIF+AV +CK +AKER +EHADYITLAC HGM HLVGFDH TEDE E M+ AEE VV AV+SE+G++GD K+FP+SYL
Sbjct:    1 MAIFIRAMRRIGTVDRQLLKKQIEVMRDTLLDGKFRNHDATIILATNAKVRRLNWRYASNRETTDVLSFALRDEPRRKSRSLSVSQKDIHGLIQDAPFLDPNTGQL-RSDIHAPRITNDLGRIFVAVPFCKTIAKERSMEHADYITLACAHGMAHLVGFDHETEDEIEIMKRAEEEVVQAVISEVGIVGDVKSFPKSYL 198          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A0G0J9D0_9BACT (Endoribonuclease YbeY n=1 Tax=candidate division TM6 bacterium GW2011_GWF2_37_49 TaxID=1619083 RepID=A0A0G0J9D0_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 6.230e-10
Identity = 46/157 (29.30%), Postives = 71/157 (45.22%), Query Frame = 0
Query:   28 NTFLNGKFRQHDATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKE---RQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVGAV 181
            N FLN      D  I+L T+  +  +N  +      TD+LSFP H  P  KP                        GQ I    V  P  ++LG I I++ + ++ A E   R ++H  ++T    HG+ HL+G DH T+DEY  M   E+ ++ ++
Sbjct:   11 NNFLNFNLFDFDLNILLTTNKSIHAINKQFRNKDKATDILSFPFH--PNLKP------------------------GQKIK---VTSPDDKNLGDIIISLEHVQKDAAEKWNRTLQH--HLTALLAHGIAHLIGHDHHTDDEYNEMLKLEKRLLNSI 136          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A7S0QYM9_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYM9_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 3.370e-9
Identity = 53/183 (28.96%), Postives = 86/183 (46.99%), Query Frame = 0
Query:   19 LKKQVEIIRNTFLNGKFRQHDATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVGAVVSEIGLLGDE-KTFPRSYLC 200
            LK QV ++R  FL  +   +   + LAT+ +++ LN  Y      TDVLSFPL+ K R     P  F       ++S            D+  VP P   +LG + + + Y K+   + +V    +  L   HG+ HL+G+DH T++E+  M+  E+ V+     E+ L  +  K  P   +C
Sbjct:   24 LKFQVNLLRK-FLGVE--DYALGLWLATNQEIKELNLQYRGKSKVTDVLSFPLN-KVRPGELPPRDFGMGFLPKVRSE-----------DTPPVPHP---ELGDVVLGMPYIKRYCVKNEVLMEQHTPLLIAHGLCHLLGYDHETDEEHMVMQAKEDEVLVNFWVELALHAERMKLAPEESVC 188          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A0P9AFH2_9CLOT (Endoribonuclease YbeY n=2 Tax=Oxobacter pfennigii TaxID=36849 RepID=A0A0P9AFH2_9CLOT)

HSP 1 Score: 63.2 bits (152), Expect = 5.790e-9
Identity = 40/139 (28.78%), Postives = 66/139 (47.48%), Query Frame = 0
Query:   41 TIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVG 179
            ++IL  + +++ +N  Y    + TDVLSFP  D P                 L++   +DP+TG+L+            LG I I++    + +KE        +    +HG+ HL+G+DH TE+E   MR  EE ++G
Sbjct:   52 SVILVDNKEIKEINRVYRKIDSATDVLSFPQIDYPAD---------------LENKENIDPDTGELV------------LGDIAISLERAYEQSKEYNHTFEREVAFLTVHGVLHLLGYDHETEEERNIMRVKEEEILG 163          
BLAST of Gcaud1956.t1 vs. uniprot
Match: F0W4A0_9STRA (Uncharacterized protein AlNc14C16G1774 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4A0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.470e-9
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 0
Query:   39 DATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEE 175
            D ++IL TD ++ RLN  +     TTD+LSFP H+  +     P  F               PN         V  P    LG I+I++ Y K+   E   +  + + +   HG+ HL+G+DH T+ E+E M  AE+
Sbjct:   42 DLSVILTTDQQLHRLNKQFRKQDKTTDILSFPSHNINQ-----PGRF---------------PN---------VRTPEDRYLGDIYISLPYVKKYCDEEGTDINEQMRVLFAHGICHLMGYDHETDQEHERMAKAED 149          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-8
Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 0
Query:    3 VYIKAMRGVNSIDRVRLKKQVEIIRNTFLNGKFRQHDATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEH-----------------------ADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVGAVVSE 184
            VY++  +    ID  +L++ +   R+  L G +   D ++ L TD  VR+LN  Y     +TD+LSF  ++       +        T L    P      G+L   A V  P   DLG + +++AY  +V ++ + E                         + + L CIHG+ HLVG+DH T+++YE M   EE ++ A+  E
Sbjct:   37 VYVRNTQRSYKIDTQQLEQHIRAARD--LLG-YSNWDVSLWLTTDKTVRKLNSQYRGKDKSTDILSFSYNELQCSYRLLHGGSHS--TKLQVETP------GKL---AKVRHPEEMDLGEMMVSLAYVDRVIQQDKAEQDGQSQEEEHDRGVSGAMSRVFTVQERLPLLCIHGLLHLVGYDHETDEDYEVMVAREEELLRALKLE 227          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A147I388_9SPHN (Endoribonuclease YbeY n=1 Tax=Sphingomonas endophytica TaxID=869719 RepID=A0A147I388_9SPHN)

HSP 1 Score: 62.4 bits (150), Expect = 1.110e-8
Identity = 43/136 (31.62%), Postives = 62/136 (45.59%), Query Frame = 0
Query:   39 DATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAE 174
            + ++ LATD +VR LN  Y      T+VLSFP+                        A  +D  T    D  V+       LG I +A   C++ A ER +  AD+ +   +HG  HL+G+DH T+DE +AM   E
Sbjct:   45 EISVRLATDEEVRTLNHQYRDKDKPTNVLSFPM----------------------VQADLIDSVTQNSDDGEVL-------LGDIVLAHGVCEREAAERNIPAADHFSHLVVHGCLHLLGYDHMTDDEGDAMEQIE 151          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A3E0PTS5_9ACTN (Endoribonuclease YbeY n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3E0PTS5_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-8
Identity = 44/143 (30.77%), Postives = 69/143 (48.25%), Query Frame = 0
Query:   39 DATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVGAV 181
            + T++L +DA++   N  +      TDVL+FP+ D    +P V               P +D N           PPL   LG I IA +Y  + A+E  V   D I+L  +HG+ HL+G+DH+++DE E M   E  ++  +
Sbjct:   36 EVTLLLVSDAEMSSYNARFLDRDGPTDVLAFPVEDL---RPGV--------------VPDVDTNG----------PPLL--LGDIIIAPSYISRQAEEYGVSFEDEISLMVVHGLLHLLGYDHQSDDEAEEMENRERQILAGI 149          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A6I3SMK8_HELMO (Endoribonuclease YbeY n=3 Tax=Heliobacterium TaxID=2697 RepID=A0A6I3SMK8_HELMO)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-8
Identity = 41/140 (29.29%), Postives = 64/140 (45.71%), Query Frame = 0
Query:   39 DATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVV 178
            + +++L  D K+R +N  Y      TDVLSF + ++   +P                  F DP+ GQ+             LG I I+V   ++ AKE        +    +HGM HL+G+DH+ E++  AMR  EE V+
Sbjct:   45 EISLVLTDDEKIRTMNLQYRNIDAPTDVLSFAMEEQTDDEPE-----------------FEDPSAGQI-------------LGDIIISVETAERQAKEYGHSLEREMGFLFVHGMFHLLGYDHQEEEDTRAMRAVEEKVL 154          
BLAST of Gcaud1956.t1 vs. uniprot
Match: A0A399IYA9_9RHOB (Endoribonuclease YbeY n=1 Tax=Pseudopuniceibacterium sediminis TaxID=2211117 RepID=A0A399IYA9_9RHOB)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-8
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   38 HDATIILATDAKVRRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLDPNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACIHGMGHLVGFDHRTEDEYEAMRTAEETVVG 179
            H+  ++   DA++ RLN  +    T T+VLS+P  D          A ++D       AP   P++   +DS         +LG I I+   C + AKE  +  AD++T   +HG+ HL+G+DH  + + E M   E  ++G
Sbjct:   41 HEICVMGCDDARIARLNTEFRDKPTPTNVLSWPAED---------LAAQED------GAPPFAPDSDDPMDS---------ELGDIAISYDTCAREAKESGLPFADHVTHLVVHGILHLLGYDHVRDGDAELMERKEVEILG 158          
The following BLAST results are available for this feature:
BLAST of Gcaud1956.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVD0_9FLOR7.260e-8864.32Putative ribonuclease n=1 Tax=Gracilariopsis chord... [more]
A0A0G0J9D0_9BACT6.230e-1029.30Endoribonuclease YbeY n=1 Tax=candidate division T... [more]
A0A7S0QYM9_9CHLO3.370e-928.96Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A0P9AFH2_9CLOT5.790e-928.78Endoribonuclease YbeY n=2 Tax=Oxobacter pfennigii ... [more]
F0W4A0_9STRA7.470e-930.66Uncharacterized protein AlNc14C16G1774 n=1 Tax=Alb... [more]
A0A835Z8A0_9STRA1.090e-827.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A147I388_9SPHN1.110e-831.62Endoribonuclease YbeY n=1 Tax=Sphingomonas endophy... [more]
A0A3E0PTS5_9ACTN1.170e-830.77Endoribonuclease YbeY n=1 Tax=Actinomycetia bacter... [more]
A0A6I3SMK8_HELMO1.360e-829.29Endoribonuclease YbeY n=3 Tax=Heliobacterium TaxID... [more]
A0A399IYA9_9RHOB1.630e-829.58Endoribonuclease YbeY n=1 Tax=Pseudopuniceibacteri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002036Endoribonuclease YbeYTIGRFAMTIGR00043TIGR00043coord: 40..178
e-value: 9.1E-19
score: 65.6
IPR002036Endoribonuclease YbeYPFAMPF02130YbeYcoord: 24..178
e-value: 1.7E-22
score: 79.7
IPR002036Endoribonuclease YbeYHAMAPMF_00009Endoribonucl_YbeYcoord: 2..192
score: 14.530983
IPR023091Metalloprotease catalytic domain superfamily, predictedGENE3D3.40.390.30Metalloproteases ("zincins"), catalytic domaincoord: 3..184
e-value: 2.3E-27
score: 97.3
NoneNo IPR availableSUPERFAMILY55486Metalloproteases ("zincins"), catalytic domaincoord: 22..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1304_length_11589_cov_5.861106contigNODE_1304_length_11589_cov_5.861106:4847..5912 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1956.t1Gcaud1956.t1Gracilaria caudata M_176_S67 malemRNANODE_1304_length_11589_cov_5.861106 4847..5912 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1956.t1 ID=Gcaud1956.t1|Name=Gcaud1956.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MAVYIKAMRGVNSIDRVRLKKQVEIIRNTFLNGKFRQHDATIILATDAKV
RRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLD
PNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACI
HGMGHLVGFDHRTEDEYEAMRTAEETVVGAVVSEIGLLGDEKTFPRSYLC
INCLSLGISRPTAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002036YbeY
IPR023091MetalPrtase_cat_dom_sf_prd