Gcaud1950.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1950.t1
Unique NameGcaud1950.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length327
Homology
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A2V3IW61_9FLOR (Pre-mRNA-splicing factor SYF2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW61_9FLOR)

HSP 1 Score: 209 bits (531), Expect = 1.260e-63
Identity = 125/203 (61.58%), Postives = 149/203 (73.40%), Query Frame = 0
Query:    1 MASTAERLKELKKKLLEAREENLKAADYEERQREEDTDVAVNRDSFQGPPKNRKGV--RKESFNRRN-----NANERDSGLGSADEAEGENNDERLRSMKRRARAMEKTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            MAS  ERLKEL+K+L EAREENLKA DYEE Q+ ED   +        PP++ + +  R E+  +R      + + R   +GSADEAE E NDERLR MKRRA+AME     +   V S D+ V+ YG VTD KEG+DRMV E+E V+RRRAKYRRRRTFDEDR+DISFINEGNR+FNRTLDKHFDKF+SV+KIKDSLERGTA
Sbjct:    1 MASAGERLKELRKQLAEAREENLKAVDYEEHQKVEDISSS--------PPRSEEIILLRGENHEKRRMHDGGDKSNRHIDVGSADEAEEEENDERLRGMKRRAKAMELANQNNPVPVISNDDTVVAYGTVTDQKEGVDRMVGELEKVERRRAKYRRRRTFDEDRSDISFINEGNRLFNRTLDKHFDKFDSVKKIKDSLERGTA 195          
BLAST of Gcaud1950.t1 vs. uniprot
Match: R7QLB2_CHOCR (Pre-mRNA-splicing factor SYF2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLB2_CHOCR)

HSP 1 Score: 156 bits (394), Expect = 5.740e-43
Identity = 104/207 (50.24%), Postives = 136/207 (65.70%), Query Frame = 0
Query:    1 MASTAERLKELKKKLLEAREENLKAADYEERQR-------EEDTDVAVNRDSFQGPPKNRKGVRKESFNRRNNANERDSG--LGSADEAEGENNDERLRSMKRRARAMEKTLHESTSQVQSEDNGVITYGAVT-DTK-EGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            M S  ERL  LK KL +AR ENLKA + E ++R       +  +  A    S + PP     ++  +  RR    ER +   +GSADEA+GE+ D+ LRSMKRRA+ M++++  S S  +      + YG    D K E IDRMVNE++ VD+RR+K+ RRR FDE+R +I+FINEGNR+FN+TLDKHFDKFESVQKIKDSLERGTA
Sbjct:    1 MVSAQERLAALKTKLEQARNENLKAVEDESKRRPNSYNNRKRSSSDAELSGSEESPPS----LKSSNCKRRRVKRERSTAAEIGSADEADGEDEDDGLRSMKRRAKNMKRSMPLSGSGEEDGKLQTVAYGLTGHDPKAENIDRMVNELQEVDKRRSKFHRRRAFDENRTEITFINEGNRLFNKTLDKHFDKFESVQKIKDSLERGTA 203          
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A0S7L4D7_9TELE (Pre-mRNA-splicing factor SYF2 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L4D7_9TELE)

HSP 1 Score: 72.8 bits (177), Expect = 3.320e-12
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 0
Query:  100 EKTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            EK   ES        N  ++YG+   TKEGIDRMV ++E    +RAKY RRR +++D ADI +INE N  FN+  ++ + K+ +  +IK +LERGTA
Sbjct:   37 EKQREESGEDFYPTSNS-LSYGSHVPTKEGIDRMVEDVEKQIEKRAKYSRRRAYNDD-ADIDYINERNAKFNKKAERFYGKYTA--EIKQNLERGTA 129          
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A7R9LWZ2_9ACAR (Pre-mRNA-splicing factor SYF2 n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9LWZ2_9ACAR)

HSP 1 Score: 72.0 bits (175), Expect = 9.670e-12
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 0
Query:  114 DNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            ++  + +G+  D+KE IDRMV+++     +R+KY RRR FD+D ADI +INE N  FN+ LD+ + ++   Q+IK +LERGTA
Sbjct:   68 NHNTLIHGSHKDSKEAIDRMVDDLNKQIDKRSKYSRRRRFDDD-ADIDYINERNMKFNKKLDRFYGQY--TQEIKQNLERGTA 147          
BLAST of Gcaud1950.t1 vs. uniprot
Match: T1JU20_TETUR (Pre-mRNA-splicing factor SYF2 n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1JU20_TETUR)

HSP 1 Score: 73.9 bits (180), Expect = 1.090e-11
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  122 AVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            A  DTKEGIDRMV +++    +R KY RRR +D+D ADI FINE NR FN+ LD+ + ++ +  +IK +LERGTA
Sbjct:  165 AFKDTKEGIDRMVEDLDKQLEKRGKYSRRRRYDDD-ADIDFINERNRNFNKKLDRFYGQYTT--EIKQNLERGTA 236          
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A2I4BFL6_9TELE (Pre-mRNA-splicing factor SYF2 n=12 Tax=Percomorphaceae TaxID=1489872 RepID=A0A2I4BFL6_9TELE)

HSP 1 Score: 73.6 bits (179), Expect = 2.380e-11
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 0
Query:  100 EKTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            EK   ES        N +I YG  T +KEGIDRMV ++E    +RAKY RRR +++D ADI +INE N  FN+  ++ + K+ +  +IK +LERGTA
Sbjct:  178 EKQREESGEDFYPTSNSLI-YGTHTPSKEGIDRMVEDVEKQIEKRAKYSRRRAYNDD-ADIDYINERNAKFNKKAERFYGKYTA--EIKQNLERGTA 270          
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A7R9BIY7_9CRUS (Pre-mRNA-splicing factor SYF2 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BIY7_9CRUS)

HSP 1 Score: 73.2 bits (178), Expect = 3.240e-11
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   70 RDSGLGSADEAEGENNDERLRSMKRRARAMEKTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            RD G  S ++A    +D+  R++K    A  K   E            I +G   D+KEG+ RMV ++E   R+R K+ RRRT+D D ADI FINE N  FN+ +D+ + K+    +IK +LERGTA
Sbjct:  148 RDEGFSSFEQATIRQHDKLTRAIKPDMEAY-KYEKEVMGDAFYPSTSTIVHGIREDSKEGVTRMVQDLEKQIRKRGKFSRRRTYDPD-ADIDFINERNMRFNKKIDRFYGKY--TLEIKQNLERGTA 270          
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A3B5PSY7_XIPMA (Pre-mRNA-splicing factor SYF2 n=15 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3B5PSY7_XIPMA)

HSP 1 Score: 72.4 bits (176), Expect = 3.870e-11
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0
Query:  100 EKTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            EK   ES        N  ++YG+   TKEG+DRMV ++E    +RAKY RRR +++D ADI +INE N  FN+  ++ + K+ +  +IK +LERGTA
Sbjct:  145 EKQREESGEDFYPTSNS-LSYGSHVPTKEGVDRMVEDVEKQIEKRAKYSRRRAYNDD-ADIDYINERNAKFNKKAERFYGKYTA--EIKQNLERGTA 237          
BLAST of Gcaud1950.t1 vs. uniprot
Match: A0A3B4F7B5_9CICH (Pre-mRNA-splicing factor SYF2 n=2 Tax=Haplochromini TaxID=319058 RepID=A0A3B4F7B5_9CICH)

HSP 1 Score: 71.2 bits (173), Expect = 7.730e-11
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 0
Query:  100 EKTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            EK   ES        N +I YG    TK+GIDRMV ++E    +R+KY RRR +++D ADI +INE N  FN+  ++ + K+ +  +IK +LERGTA
Sbjct:  129 EKQKEESGEDFHPTSNSLI-YGTHVPTKDGIDRMVEDVEKQIEKRSKYSRRRAYNDD-ADIDYINERNAKFNKKAERFYGKYTA--EIKQNLERGTA 221          
BLAST of Gcaud1950.t1 vs. uniprot
Match: R7UNX6_CAPTE (Pre-mRNA-splicing factor SYF2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UNX6_CAPTE)

HSP 1 Score: 71.2 bits (173), Expect = 8.620e-11
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 0
Query:  124 TDTKEGIDRMVNEIEGVDRRRAKYRRRRTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTA 196
            TDTKE IDRMV+++E    +R+KY RRRT DE+ ADI +INE N  FN+ L++ +  + S  +IK +LERGTA
Sbjct:  159 TDTKESIDRMVDDLEQQIEKRSKYSRRRTHDEE-ADIDYINERNMKFNKKLERFYGSYTS--EIKQNLERGTA 228          
The following BLAST results are available for this feature:
BLAST of Gcaud1950.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IW61_9FLOR1.260e-6361.58Pre-mRNA-splicing factor SYF2 n=1 Tax=Gracilariops... [more]
R7QLB2_CHOCR5.740e-4350.24Pre-mRNA-splicing factor SYF2 n=1 Tax=Chondrus cri... [more]
A0A0S7L4D7_9TELE3.320e-1244.33Pre-mRNA-splicing factor SYF2 (Fragment) n=1 Tax=P... [more]
A0A7R9LWZ2_9ACAR9.670e-1245.78Pre-mRNA-splicing factor SYF2 n=1 Tax=Oppiella nov... [more]
T1JU20_TETUR1.090e-1153.33Pre-mRNA-splicing factor SYF2 n=1 Tax=Tetranychus ... [more]
A0A2I4BFL6_9TELE2.380e-1145.36Pre-mRNA-splicing factor SYF2 n=12 Tax=Percomorpha... [more]
A0A7R9BIY7_9CRUS3.240e-1139.37Pre-mRNA-splicing factor SYF2 n=1 Tax=Notodromas m... [more]
A0A3B5PSY7_XIPMA3.870e-1143.30Pre-mRNA-splicing factor SYF2 n=15 Tax=Cyprinodont... [more]
A0A3B4F7B5_9CICH7.730e-1143.30Pre-mRNA-splicing factor SYF2 n=2 Tax=Haplochromin... [more]
R7UNX6_CAPTE8.620e-1153.42Pre-mRNA-splicing factor SYF2 n=1 Tax=Capitella te... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..150
NoneNo IPR availableCOILSCoilCoilcoord: 1..31
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..103
NoneNo IPR availablePANTHERPTHR13264:SF5PRE-MRNA-SPLICING FACTOR SYF2coord: 3..197
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 326..326
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 307..325
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..306
IPR013260mRNA splicing factor SYF2PFAMPF08231SYF2coord: 13..192
e-value: 2.9E-13
score: 50.5
IPR013260mRNA splicing factor SYF2PANTHERPTHR13264GCIP-INTERACTING PROTEIN P29coord: 3..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_821_length_17530_cov_5.307414contigNODE_821_length_17530_cov_5.307414:5817..7602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1950.t1Gcaud1950.t1Gracilaria caudata M_176_S67 malemRNANODE_821_length_17530_cov_5.307414 5817..7602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1950.t1 ID=Gcaud1950.t1|Name=Gcaud1950.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MASTAERLKELKKKLLEAREENLKAADYEERQREEDTDVAVNRDSFQGPP
KNRKGVRKESFNRRNNANERDSGLGSADEAEGENNDERLRSMKRRARAME
KTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRR
RTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTAQYRE
WLPDRVVIINTELSIPDMRIQLWKVTLVKDKNSFQRIELEARMPTTPNTG
TTLGSIFLGELHLECYSFLRDEHLTAHVTRTTAGNQSNKKATRSQNASYK
SFLQKHLGALSLFTLLMGVLVMKVLR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013260mRNA_splic_SYF2