Gcaud1933.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1933.t1
Unique NameGcaud1933.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Homology
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A7S3PK05_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK05_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.220e-26
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 0
Query:   10 RIASSIPSQATFVRHATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRV--YVSVEPAPEW 119
            ++ +S+P     VR ATKKA GS+ NGRDS GKRLG K+  G++ + G I+VRQRGT + PG ++G GRDHTL+ALT+G  +F        SK+ K GR+  YV +EP P+W
Sbjct:   40 QLVNSVP-----VRFATKKAGGSTNNGRDSPGKRLGVKIYGGQFAKHGAIVVRQRGTPVHPGFNIGMGRDHTLFALTSGKVKFY-------SKEVKPGRIVKYVGIEPLPDW 139          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A7C5IYH2_9GAMM (50S ribosomal protein L27 n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7C5IYH2_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 2.630e-24
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPA 116
            A KKA GSS NGRDS  KRLG K+  G+ V+ G+I++RQRGT++  G+ VGCGRDHTLYALT+G+ +F +  PR         R YVSV PA
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKLFGGQKVKAGNIIIRQRGTRVHAGVGVGCGRDHTLYALTDGVVKFEKKGPR--------NRKYVSVVPA 85          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A847KRG1_9PROT (50S ribosomal protein L27 n=1 Tax=Acetobacter sp. TaxID=440 RepID=A0A847KRG1_9PROT)

HSP 1 Score: 98.2 bits (243), Expect = 4.180e-24
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPAP 117
            A KKA GSS NGRDS G+RLG K   G+ V  G+I+VRQRGTKM PG +VG GRDHT++AL +G  RF R +         +GRV+VSVE  P
Sbjct:    2 AQKKAGGSSRNGRDSAGRRLGVKKFGGQSVIAGNIIVRQRGTKMLPGENVGVGRDHTIFALVDGAVRFARRR---------EGRVHVSVEALP 85          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A523G713_9PROT (50S ribosomal protein L27 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523G713_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 5.290e-24
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPAP 117
            A KKA GSS NGRDS+G+RLG K   GE V  G+I+VRQRGTK  PG +VG G+DHTL+ALT+G  RF        SKK++ GR +V V+PAP
Sbjct:    2 AHKKAGGSSRNGRDSIGRRLGVKKYGGEIVIAGNIIVRQRGTKFHPGENVGMGKDHTLFALTDGQVRF--------SKKAQ-GRTFVLVDPAP 85          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A661ZAN3_9BACT (50S ribosomal protein L27 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661ZAN3_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.510e-23
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPA 116
            A KK  GS+ NGRDS  KRLG K+  G+ V  G+I+VRQRGTK FPG +VG G+DHTL+ALTNGI +F         +K +  + YVSVEPA
Sbjct:    2 AHKKGMGSTRNGRDSESKRLGVKLYGGQKVTAGNIIVRQRGTKHFPGNNVGMGKDHTLFALTNGIIKF---------QKKRNNKSYVSVEPA 84          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A099FC34_9RHOB (50S ribosomal protein L27 n=6 Tax=Paracoccus TaxID=265 RepID=A0A099FC34_9RHOB)

HSP 1 Score: 96.7 bits (239), Expect = 1.680e-23
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPA 116
            A KKA GSS NGRDS G+RLG K+  G+ V  G+I+VRQRGT+ +PG +VG GRDHTL+ALT G   F         +K  KGR Y+SV+PA
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKLFGGQSVIPGNIIVRQRGTQWWPGSNVGMGRDHTLFALTEGTVTF---------RKGLKGRTYISVQPA 84          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A2G2HRA0_9PROT (50S ribosomal protein L27 n=2 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2HRA0_9PROT)

HSP 1 Score: 96.3 bits (238), Expect = 2.260e-23
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPAPE 118
            A KKA GS+ NGRDS G+RLG K   G++V  G+I++RQRGTK++PG +VG G+DHTLYALT G   F R K           R YVSV P PE
Sbjct:    2 AKKKAGGSTSNGRDSAGRRLGVKKFGGQHVIPGNIIIRQRGTKVYPGDNVGMGKDHTLYALTEGHVLFNRKKLN---------RSYVSVTPTPE 86          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A261D9L5_9RICK (50S ribosomal protein L27 n=1 Tax=Rickettsia endosymbiont of Culicoides newsteadi TaxID=1961830 RepID=A0A261D9L5_9RICK)

HSP 1 Score: 95.9 bits (237), Expect = 2.940e-23
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARF 92
            ATKKA GSS NGRDS G+RLG K S+G+YV +G+I+VRQRGTK++PG +VG GRDHTL+AL  G  +F
Sbjct:    2 ATKKAGGSSRNGRDSAGRRLGTKKSDGQYVISGNIIVRQRGTKIYPGENVGIGRDHTLFALVKGKVKF 69          
BLAST of Gcaud1933.t1 vs. uniprot
Match: A0A8F5JPP7_9PROT (50S ribosomal protein L27 n=1 Tax=Elioraea tepida TaxID=2843330 RepID=A0A8F5JPP7_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 3.380e-23
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPAP 117
            A KKA GSS NGRDSVG+RLG K+  GE    G+I+VRQRGTKM PG +VG GRDHTL+AL +G  RF R +           RV+VSV P P
Sbjct:    2 AHKKAGGSSRNGRDSVGRRLGVKLFGGELAIAGNIIVRQRGTKMKPGRNVGLGRDHTLFALVDGRVRFERKRDN---------RVHVSVVPLP 85          
BLAST of Gcaud1933.t1 vs. uniprot
Match: UPI000FDB2F7E (50S ribosomal protein L27 n=1 Tax=Solirhodobacter olei TaxID=2493082 RepID=UPI000FDB2F7E)

HSP 1 Score: 95.9 bits (237), Expect = 3.380e-23
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   25 ATKKAKGSSGNGRDSVGKRLGPKVSNGEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPGSKKSKKGRVYVSVEPAPE 118
            A KKA GSS NGRD+ G+RLG K+  GE V  G+I+VRQRGTK FPG  VG G DHT++A+T G   F         KK  KGR ++SV P PE
Sbjct:    2 AHKKAGGSSRNGRDTAGRRLGVKLYGGEAVRPGNIIVRQRGTKWFPGEGVGMGTDHTIFAMTEGRVSF---------KKGFKGRTFISVLPVPE 86          
The following BLAST results are available for this feature:
BLAST of Gcaud1933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3PK05_9STRA3.220e-2650.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7C5IYH2_9GAMM2.630e-2455.4350S ribosomal protein L27 n=3 Tax=Gammaproteobacte... [more]
A0A847KRG1_9PROT4.180e-2455.9150S ribosomal protein L27 n=1 Tax=Acetobacter sp. ... [more]
A0A523G713_9PROT5.290e-2458.0650S ribosomal protein L27 n=1 Tax=Alphaproteobacte... [more]
A0A661ZAN3_9BACT1.510e-2355.4350S ribosomal protein L27 n=1 Tax=Bacteroidetes ba... [more]
A0A099FC34_9RHOB1.680e-2355.4350S ribosomal protein L27 n=6 Tax=Paracoccus TaxID... [more]
A0A2G2HRA0_9PROT2.260e-2354.2650S ribosomal protein L27 n=2 Tax=Robiginitomaculu... [more]
A0A261D9L5_9RICK2.940e-2366.1850S ribosomal protein L27 n=1 Tax=Rickettsia endos... [more]
A0A8F5JPP7_9PROT3.380e-2356.9950S ribosomal protein L27 n=1 Tax=Elioraea tepida ... [more]
UPI000FDB2F7E3.380e-2354.2650S ribosomal protein L27 n=1 Tax=Solirhodobacter ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001684Ribosomal protein L27PRINTSPR00063RIBOSOMALL27coord: 27..51
score: 57.69
coord: 77..101
score: 36.46
coord: 52..76
score: 53.85
IPR001684Ribosomal protein L27PFAMPF01016Ribosomal_L27coord: 25..102
e-value: 9.8E-30
score: 102.4
IPR001684Ribosomal protein L27TIGRFAMTIGR00062TIGR00062coord: 25..96
e-value: 2.0E-30
score: 102.7
IPR001684Ribosomal protein L27PANTHERPTHR15893RIBOSOMAL PROTEIN L27coord: 13..118
NoneNo IPR availableGENE3D2.40.50.100coord: 30..131
e-value: 8.3E-26
score: 92.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..47
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 25..98
IPR018261Ribosomal protein L27, conserved sitePROSITEPS00831RIBOSOMAL_L27coord: 57..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:31773..32210 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1933.t1Gcaud1933.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 31773..32210 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1933.t1 ID=Gcaud1933.t1|Name=Gcaud1933.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MQTLISGFRRIASSIPSQATFVRHATKKAKGSSGNGRDSVGKRLGPKVSN
GEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPG
SKKSKKGRVYVSVEPAPEWRWKSIQRKIRRLEIARYRGPILHAPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001684Ribosomal_L27
IPR018261Ribosomal_L27_CS