Gcaud1932.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1932.t1
Unique Name	Gcaud1932.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	134

Homology

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BLAST of Gcaud1932.t1 vs. uniprot
Match: A0A2V3IPU2_9FLOR (Cytochrome B5 isoform D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPU2_9FLOR)

HSP 1 Score: 221 bits (562), Expect = 3.040e-72
Identity = 111/133 (83.46%), Postives = 116/133 (87.22%), Query Frame = 0

Query:    1 MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEXXXXXXXXXXEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK 133
            MPGSKAYPMVEVARHTSSSSCWMVIDS VYDVTSFLLEHPGGDDILLDSSGRD+TREFEDVGHSSDARAQLAEL IG+LRDPT EE+  AE          EAQKGGVV+ALAKWLLPLFLVGVAY+LR Y K
Sbjct:    1 MPGSKAYPMVEVARHTSSSSCWMVIDSNVYDVTSFLLEHPGGDDILLDSSGRDATREFEDVGHSSDARAQLAELQIGELRDPTPEEVALAEQEARERGESAEAQKGGVVSALAKWLLPLFLVGVAYILRKYVK 133

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BLAST of Gcaud1932.t1 vs. uniprot
Match: R7QCY4_CHOCR (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCY4_CHOCR)

HSP 1 Score: 167 bits (422), Expect = 6.870e-51
Identity = 82/135 (60.74%), Postives = 101/135 (74.81%), Query Frame = 0

Query:    1 MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEXXXXXXXXXXEAQKGG--VVAALAKWLLPLFLVGVAYVLRNYAK 133
            MP  K YPM+EVARH+++ SCW+VID KVYD T FLLEHPGGDDI+++SSGRD+TREFEDVGHS +ARAQL +L IG LRDPT EE E+AE           A   G  ++  +A W+LP+ LVG+AY+LR YAK
Sbjct:    1 MPDMKEYPMIEVARHSTADSCWLVIDGKVYDTTDFLLEHPGGDDIVVESSGRDATREFEDVGHSGEARAQLEDLLIGTLRDPTPEETERAEDEARKSGEKPAAADAGSAMLKTIAGWVLPIVLVGLAYLLRKYAK 135

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BLAST of Gcaud1932.t1 vs. uniprot
Match: A0A5J4Z7Y1_PORPP (Cytochrome B5 isoform D n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7Y1_PORPP)

HSP 1 Score: 128 bits (321), Expect = 2.140e-35
Identity = 68/134 (50.75%), Postives = 83/134 (61.94%), Query Frame = 0

Query:    1 MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQ-AEXXXXXXXXXXEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK 133
            M   K + M+EV  H S    WMVID KVYDVTSFLL+HPGGDD+LL + GRD+ REFEDVGHS DAR +L EL +G LRDPT EE E+ AE           A     V    K+L P+ ++ +A V+R Y  
Sbjct:   13 MADMKEFSMLEVLEHASRQDFWMVIDGKVYDVTSFLLDHPGGDDLLLQTLGRDAHREFEDVGHSGDARQKLEELFVGKLRDPTPEESEKMAELEKAGKKVGPVASANSPVQTALKFLFPVLILVIALVVRKYVS 146

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BLAST of Gcaud1932.t1 vs. uniprot
Match: A0A7S0G445_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G445_9RHOD)

HSP 1 Score: 124 bits (311), Expect = 6.250e-34
Identity = 63/135 (46.67%), Postives = 86/135 (63.70%), Query Frame = 0

Query:    1 MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEXXXXXXXXXX----EAQKGGVVAALAKWLLPLFLVGVAYVLRNY 131
            M   K Y ++EVA+H     CWMVI  KVYDVTSFLL+HPGG+DIL+++SGRD+TREFEDVGHS+DAR  L +L +G LR+PT+EE  + E              E      +    K+L+P+ ++ V  +LR +
Sbjct:    1 MGEEKQYSLLEVAKHDKRKDCWMVIHGKVYDVTSFLLDHPGGEDILVETSGRDATREFEDVGHSNDARGALKDLLLGTLREPTEEEKAEHEKKVAEGRSKSIISSENDDESFIQKATKFLVPVLIIAVGLLLRQW 135

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BLAST of Gcaud1932.t1 vs. uniprot
Match: A0A7S1TD50_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD50_9RHOD)

HSP 1 Score: 118 bits (295), Expect = 1.570e-31
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 0

Query:    9 MVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEE---IEQAEXXXXXXXXXXEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK 133
            M+E+ +HT   SCWMVI   VYDVT FLL+HPGGDD+LLD +G+D+TR FEDVGHS+DAR ++ +L++G +   T+EE   + ++           E  K  +   LAK+L P+ ++GVA ++R Y  
Sbjct:   13 MLELQQHTKKQSCWMVIHGDVYDVTPFLLDHPGGDDVLLDWAGKDATRGFEDVGHSNDAREEMKKLYVGKILPLTEEEKSKLAESGTKAMSNVTTLEGNKQTLWMTLAKYLFPVVILGVALLIRKYTS 140

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BLAST of Gcaud1932.t1 vs. uniprot
Match: UPI00125DF52A (cytochrome b5 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125DF52A)

HSP 1 Score: 114 bits (286), Expect = 3.140e-30
Identity = 54/131 (41.22%), Postives = 84/131 (64.12%), Query Frame = 0

Query:    3 GSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEXXXXXXXXXXEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK 133
            GSK Y + +V++H ++  CW++ID KVYDVT FL +HPGGD++LL S+G+D+T +FEDVGHSS ARA + E ++GD+   T     + +          + +    +  L ++L+PL ++GVA  +R Y K
Sbjct:    4 GSKVYTLAQVSQHNNAKDCWLIIDGKVYDVTKFLEDHPGGDEVLLSSTGKDATDDFEDVGHSSSARAMMDEYYVGDIDSSTIPS--KTKYTPPKQPHYNQDKTSDFIVKLLQFLVPLIILGVAVGVRFYTK 132

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BLAST of Gcaud1932.t1 vs. uniprot
Match: A5ATD8_VITVI (Cytochrome b5 heme-binding domain-containing protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=A5ATD8_VITVI)

HSP 1 Score: 113 bits (283), Expect = 8.430e-30
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = 0

Query:    1 MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEXXXXXXXXXXEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK 133
            M   K Y + EV+ H +   CW++ID KVYDVT FL +HPGGDD+LL ++G+D+T +FEDVGHSS ARA + E H+GD+   T     +            + +    V  L ++L+PL ++GVA  +R Y K
Sbjct:    1 MGEGKVYTLAEVSEHNTPKDCWLIIDGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSSSARAMMDEFHVGDIDTATIPS--KVNYTPPKQPHYNQDKTSEFVIKLLQFLVPLIILGVAVGIRFYTK 131

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BLAST of Gcaud1932.t1 vs. uniprot
Match: A0A1X6NSS8_PORUM (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSS8_PORUM)

HSP 1 Score: 112 bits (281), Expect = 8.950e-30
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0

Query:    2 PGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEE 86
            P  +  P  E+A HTS SS WM+ID KV+D+T+FL +HPGGD+ILLD++ RD+T+EFEDVGHS +ARAQLAE+ IG  R PT EE
Sbjct:    5 PPMREIPTTELADHTSRSSAWMLIDGKVHDITAFLDDHPGGDEILLDATARDATQEFEDVGHSGEARAQLAEMVIGVARPPTAEE 89

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BLAST of Gcaud1932.t1 vs. uniprot
Match: M1VFN1_CYAM1 (Similar to cytochrome B5 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VFN1_CYAM1)

HSP 1 Score: 114 bits (284), Expect = 1.550e-29
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0

Query:    7 YPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEI 87
            + + EVA+H    SCW+VID KVY V  FL EHPGG+D+LL+++GRD+TREFEDVGHS  AR QL E +IGD+R+PT EE+
Sbjct:    9 FTLDEVAKHADKDSCWLVIDGKVYAVEKFLNEHPGGEDVLLETAGRDATREFEDVGHSKSAREQLKEFYIGDVREPTAEEL 89

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BLAST of Gcaud1932.t1 vs. uniprot
Match: UPI001C27183F (cytochrome b5-like n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27183F)

HSP 1 Score: 111 bits (278), Expect = 4.960e-29
Identity = 54/130 (41.54%), Postives = 80/130 (61.54%), Query Frame = 0

Query:    4 SKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSSGRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEXXXXXXXXXXEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK 133
            SK + + E++ HT++  CW++I  KVYDVT FL +HPGGD++LL S+G+D+T +FEDVGHSS ARA L E ++GD+   T                  + +  G +  L + L+PL ++GVA  +R Y K
Sbjct:    2 SKVFTLAELSEHTTNKDCWLLIGGKVYDVTKFLDDHPGGDEVLLQSTGKDATDDFEDVGHSSTARAMLDEYYVGDIDSSTIPSKASTTYAPPKQAQLNQDKSSGFLIKLLQILVPLLILGVAVGVRFYTK 131

The following BLAST results are available for this feature:

BLAST of Gcaud1932.t1 vs. uniprot

BLAST of Gcaud1932.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IPU2_9FLOR	3.040e-72	83.46	Cytochrome B5 isoform D n=1 Tax=Gracilariopsis cho...	[more]
R7QCY4_CHOCR	6.870e-51	60.74	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A5J4Z7Y1_PORPP	2.140e-35	50.75	Cytochrome B5 isoform D n=1 Tax=Porphyridium purpu...	[more]
A0A7S0G445_9RHOD	6.250e-34	46.67	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7S1TD50_9RHOD	1.570e-31	45.31	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
UPI00125DF52A	3.140e-30	41.22	cytochrome b5 n=1 Tax=Ipomoea triloba TaxID=35885 ...	[more]
A5ATD8_VITVI	8.430e-30	42.11	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A1X6NSS8_PORUM	8.950e-30	62.35	Cytochrome b5 heme-binding domain-containing prote...	[more]
M1VFN1_CYAM1	1.550e-29	61.73	Similar to cytochrome B5 n=1 Tax=Cyanidioschyzon m...	[more]
UPI001C27183F	4.960e-29	41.54	cytochrome b5-like n=2 Tax=Salvia splendens TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001199	Cytochrome b5-like heme/steroid binding domain	PRINTS	PR00363	CYTOCHROMEB5	coord: 67..79 score: 41.03 coord: 29..39 score: 62.12 coord: 54..61 score: 44.32 coord: 39..53 score: 50.51
IPR001199	Cytochrome b5-like heme/steroid binding domain	SMART	SM01117	Cyt_b5_2	coord: 7..80 e-value: 3.3E-25 score: 99.8
IPR001199	Cytochrome b5-like heme/steroid binding domain	PFAM	PF00173	Cyt-b5	coord: 11..79 e-value: 4.9E-20 score: 71.5
IPR001199	Cytochrome b5-like heme/steroid binding domain	PROSITE	PS50255	CYTOCHROME_B5_2	coord: 4..80 score: 25.960201
IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	GENE3D	3.10.120.10		coord: 3..94 e-value: 4.4E-30 score: 105.5
IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	SUPERFAMILY	55856	Cytochrome b5-like heme/steroid binding domain	coord: 4..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..102
None	No IPR available	PANTHER	PTHR19359	CYTOCHROME B5	coord: 4..132
None	No IPR available	PANTHER	PTHR19359:SF107	CYTOCHROME B5 ISOFORM B	coord: 4..132
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..107
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 129..133
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 108..128
None	No IPR available	TMHMM	TMhelix		coord: 106..128
IPR018506	Cytochrome b5, heme-binding site	PROSITE	PS00191	CYTOCHROME_B5_1	coord: 35..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:29918..30415 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1932.t1	Gcaud1932.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_105_length_50300_cov_4.471768 29918..30415 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1932.t1 ID=Gcaud1932.t1|Name=Gcaud1932.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSS
GRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEQEKLERGES
DEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001199	Cyt_B5-like_heme/steroid-bd
IPR036400	Cyt_B5-like_heme/steroid_sf
IPR018506	Cyt_B5_heme-BS