Gcaud1923.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1923.t1
Unique NameGcaud1923.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length214
Homology
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A2V3IPU9_9FLOR (PsbP-like protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPU9_9FLOR)

HSP 1 Score: 301 bits (770), Expect = 2.200e-101
Identity = 149/184 (80.98%), Postives = 162/184 (88.04%), Query Frame = 0
Query:   30 PAMMAGPCSPQRVSRRTFSTLLSTLPLIPLLPASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            P M A P +   +SRR FSTLL+  P  PLLPA+AADISG VTP++DLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVA DKSL+DLG+AE VG KLA AR+ KL+ A +KDIDGIPAY+ EIKRESAHQLTLLTVNKQKLYSVNASCSE+RW KREKLLRGVVDSFRPKL
Sbjct:   29 PRMSASPATASTISRRAFSTLLAIAPFAPLLPAAAADISGFVTPHQDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVAKDKSLTDLGTAEQVGTKLATARNAKLINAAEKDIDGIPAYLFEIKRESAHQLTLLTVNKQKLYSVNASCSERRWNKREKLLRGVVDSFRPKL 212          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A1X6NNU3_PORUM (PsbP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNU3_PORUM)

HSP 1 Score: 186 bits (472), Expect = 7.310e-56
Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 0
Query:   62 ASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            A+A ++   V  YKDL KGFTILRP GWN+FEA    YDIKWQD+IQPLE +TVLT+PV   K+++D+G+ ++VG KLAK+R  +LV A+ K+ +G+  Y +E+K  S HQLT L VNK KLYSVN S +E +W KREKLLRGV +SF+P L
Sbjct:   81 ATAVNLGSSVEVYKDLNKGFTILRPQGWNQFEATAGQYDIKWQDLIQPLEIITVLTTPVGKGKTVADIGTPDAVGTKLAKSRRAELVSAVSKEEEGLTYYTVELKSASVHQLTTLVVNKSKLYSVNVSSAEGKWSKREKLLRGVAESFKPSL 232          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A5J4YMB8_PORPP (PsbP-like protein 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMB8_PORPP)

HSP 1 Score: 178 bits (452), Expect = 8.390e-53
Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 0
Query:   61 PASAA-----DISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            PA AA      I  LVT Y D+PKGF++ RP GWNEF A  D YDIKWQDVIQP E +TVLT+PV+  K+   +G+ + VG++LAK+R   L+ A ++D + +  Y +E++  + HQL  L++NK KLYSV A+C E RW KREKL RGVVDSF PKL
Sbjct:   78 PADAALPRPPGIGSLVTAYSDIPKGFSMYRPQGWNEFSATPDMYDIKWQDVIQPTEQITVLTTPVSKGKTTESMGTPQEVGERLAKSRKATLIAATERDAENVKVYTIELQFGNLHQLNALSINKSKLYSVTATCGEPRWSKREKLYRGVVDSFSPKL 235          
BLAST of Gcaud1923.t1 vs. uniprot
Match: D4NY62_GALSU (Chloroplast photosystem II 23 kDa n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D4NY62_GALSU)

HSP 1 Score: 168 bits (425), Expect = 1.250e-48
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 0
Query:   65 ADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            A ++  V  YKDL +G+ ILRP GWNEF   ++ YDIKWQD+IQPLE V + T  +  +KS+ DLGS   +G+KLAK R  +LV A +K+  GIPAY +E+K +  HQL LLT +K KL++V A+CSE RW  REKLLR VV+SF P L
Sbjct:   95 ASVANQVETYKDLIQGYKILRPLGWNEFSGQRNQYDIKWQDIIQPLEVVMIATVDIGKNKSIKDLGSPMQIGEKLAKNRKLQLVTATEKETGGIPAYEIELKGDPLHQLVLLTASKSKLFNVTATCSESRWSNREKLLRTVVESFVPSL 243          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A7V5I2P9_9BACT (PsbP domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I2P9_9BACT)

HSP 1 Score: 156 bits (394), Expect = 2.920e-43
Identity = 82/155 (52.90%), Postives = 106/155 (68.39%), Query Frame = 0
Query:   61 PASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDN--YDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            PA   D+   +  Y DL +G+ + RP GWNEF+    N  Y+ K+QD+IQPLEFVTV + PV   K+L+ LG AE+VG +LA+ R   LV A QK+ DGI  Y+ E  RE AHQL+LLT+N+ +L+SVNA  SE RW + EKLLR VVDSF P+L
Sbjct:  150 PAVPRDVRNQLELYVDLQRGYKMYRPKGWNEFDGDPGNTKYEKKFQDIIQPLEFVTVFSIPVKPGKTLASLGDAEAVGKRLAEQRGATLVAANQKESDGILYYVFEYVREPAHQLSLLTINRGRLFSVNACASEARWKRLEKLLRAVVDSFVPQL 304          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A7J7IHP7_9RHOD (PsbP-like protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHP7_9RHOD)

HSP 1 Score: 152 bits (383), Expect = 4.440e-43
Identity = 78/150 (52.00%), Postives = 104/150 (69.33%), Query Frame = 0
Query:   66 DISGLVTPYKDLPKGFTILRPNGWNEFEALQDN--YDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            D+  L+  Y DL +G+ + RP GWNEF+    N  Y+ K+QD+IQPLEFVTV + PV   K+L  LG AE+VG +LA+ R   LV A QK+ +G+  Y+ E  RE  HQL+L+T+N+ +L+SVNAS SE RW + EKLLR VVDSF P+L
Sbjct:   33 DVRNLLELYVDLQRGYKMYRPKGWNEFDGDPGNTKYEKKFQDIIQPLEFVTVYSIPVKPGKTLESLGDAEAVGRRLAEKRGATLVAANQKESNGVLYYIFEYVREPVHQLSLITINRGRLFSVNASASEARWKRLEKLLRAVVDSFVPQL 182          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A7S0W0N6_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0N6_9CRYP)

HSP 1 Score: 132 bits (331), Expect = 6.780e-34
Identity = 68/154 (44.16%), Postives = 99/154 (64.29%), Query Frame = 0
Query:   64 AADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIKRES----AHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            A+ + GL+ P+KD+ KGF +L+P GWN+F+A    YDIKW+D+++  E V V T  V + KS+  LG  E++G KLA  +  +LV A ++++DGI  Y    K+ +    A ++  L VNK +L+SV A+ SEKRW KREK    V+ SF PKL
Sbjct:  151 ASRMGGLLEPFKDINKGFQLLKPRGWNQFDAAPGEYDIKWEDLVEKSEMVMVGTKEVQTAKSVDALGDVEALGKKLAAKKKAELVSAEKREVDGILFYKFIFKQGNEKVGAREVYQLCVNKGRLWSVTATTSEKRWAKREKFYDNVMMSFVPKL 304          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A7R9ZSC4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSC4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.910e-32
Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 0
Query:   61 PASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASDK-SLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLE-IKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            P     + GL+ P++D P+   ++ P+GWN+FE     YDIKWQD++ P E + + ++PV S   S+  LG  +++G+ LA  RS KL+ A ++  DGI  Y  + +  +  HQL  L V K KL+S++AS  +KRWGKRE+L   V+ SF PKL
Sbjct:   51 PRIVTRMGGLLEPFQDGPRSIKMMVPSGWNKFEGEVGAYDIKWQDLVDPNENIKISSTPVKSTTASIGVLGDVKALGESLASKRSAKLISAEERQTDGILFYKFDFLISDGTHQLLQLCVCKGKLWSIDASAKDKRWGKREELYNNVLGSFMPKL 205          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A7S2YI26_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YI26_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.150e-32
Identity = 70/179 (39.11%), Postives = 108/179 (60.34%), Query Frame = 0
Query:   46 TFSTLLSTLPLI-PLLPASAAD--------ISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASD-KSLSDLGSAESVGDKLAKARSGKLVRAIQKDIDGIPAYMLEIK-RESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 213
            T S +++T  L  P+  A+ AD        + GL+ P++D P+   ++ P+GWN+F+     +D+KWQD++ P E + + +SPV S  +S++ LG  + VG  LA  R  KL++A ++  DGI  Y  +    +  HQL  L V+K KL+SV+A+  EKRWGKRE+L   V+ SF PKL
Sbjct:   43 TSSAVVATSTLAAPIASAAVADETPRVTTRMGGLLEPFQDGPRSIRMMAPSGWNKFDGEVGAFDLKWQDLVDPTENIKITSSPVKSTTESVALLGPVQDVGLSLASKRGAKLIKAEERQTDGIVFYKFDFAIDDGTHQLLQLCVSKGKLWSVDANAKEKRWGKREELYNNVLGSFMPKL 221          
BLAST of Gcaud1923.t1 vs. uniprot
Match: A0A1Z5JX21_FISSO (Photosystem II oxygen-evolving enhancer protein 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JX21_FISSO)

HSP 1 Score: 124 bits (312), Expect = 4.330e-32
Identity = 68/157 (43.31%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   61 PASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVASD-KSLSDLGSAESVGDKLAKARS-GKLVRAIQKDIDGIPAYMLEIKR-ESAHQLTLLTVNKQKLYSVNASC-SEKRWGKREKLLRGVVDSFRPKL 213
            P     + GL+ PY+D P+GF +L P+GWN+F+     YD+KWQD++ PLE + + ++PV S  +S++ LG+ E +G KLA  R+   LV+A ++  DGI  Y  E    +  HQL LLT++K KL+S++A+  +E RW KR +L   VV SF PKL
Sbjct:   51 PRVVTRMGGLLEPYQDGPRGFRLLAPSGWNKFDGEVGAYDVKWQDLVDPLEQIKLSSTPVKSSIESVAALGTVEELGPKLAAKRNQATLVQASERITDGILFYTFEFALPDQTHQLLLLTIHKSKLWSLDANARNEGRWKKRSELYANVVGSFMPKL 207          
The following BLAST results are available for this feature:
BLAST of Gcaud1923.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPU9_9FLOR2.200e-10180.98PsbP-like protein 1, chloroplastic n=1 Tax=Gracila... [more]
A0A1X6NNU3_PORUM7.310e-5657.89PsbP domain-containing protein n=1 Tax=Porphyra um... [more]
A0A5J4YMB8_PORPP8.390e-5353.80PsbP-like protein 1, chloroplastic n=1 Tax=Porphyr... [more]
D4NY62_GALSU1.250e-4854.36Chloroplast photosystem II 23 kDa n=1 Tax=Galdieri... [more]
A0A7V5I2P9_9BACT2.920e-4352.90PsbP domain-containing protein n=2 Tax=cellular or... [more]
A0A7J7IHP7_9RHOD4.440e-4352.00PsbP-like protein n=1 Tax=Cyanidiococcus yangmings... [more]
A0A7S0W0N6_9CRYP6.780e-3444.16Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7R9ZSC4_9STRA2.910e-3241.29Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S2YI26_9STRA3.150e-3239.11Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5JX21_FISSO4.330e-3243.31Photosystem II oxygen-evolving enhancer protein 2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 60..210
e-value: 1.3E-32
score: 115.0
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 41..210
NoneNo IPR availablePANTHERPTHR31407:SF4PSBP-LIKE PROTEIN 1, CHLOROPLASTICcoord: 41..210
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 72..210
e-value: 5.6E-27
score: 94.8
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 74..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:16560..17201 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1923.t1Gcaud1923.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 16560..17201 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1923.t1 ID=Gcaud1923.t1|Name=Gcaud1923.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=214bp
MASARGAFIAAQPLPVASGYSSPRVSPRRPAMMAGPCSPQRVSRRTFSTL
LSTLPLIPLLPASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYD
IKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRA
IQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREK
LLRGVVDSFRPKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand