Gcaud1918.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1918.t1
Unique NameGcaud1918.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length583
Homology
BLAST of Gcaud1918.t1 vs. uniprot
Match: A0A2V3IPV6_9FLOR (Transcription termination factor MTERF5, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV6_9FLOR)

HSP 1 Score: 294 bits (752), Expect = 1.720e-89
Identity = 202/423 (47.75%), Postives = 279/423 (65.96%), Query Frame = 0
Query:  136 VQTRARLIESSERRTQVMSIEAKLRSLGAQYAADQAHCLLATKAFDIPETWPALLSVLNEHGITNLTLSRITSKLGVVKLLNVSPASASNLFHLFGKSLMLSTDQQKQILSTKPGILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKFLQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKPVLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFLQVQLHFYISFCEA 558
            +Q RA+LI S+E+  QV +IE +LR+L A  AADQA+  L+T    +P TW   L +L ++GIT   LSR+ S+LG++ LLNVSPA A +LF L   ++ LS  Q++++L+++P +L  DVNL++++L+ L E G+R +D++R+V+  P +LLLHP  ++R+ +FLQ SPL +P + +R LLRR+PWI   DID+ MAP   WL EYV    ++P   + ILSAP +L   R+SL+ VM  L     L    +VSV+   P ILT S ++ L+P + +                 XXXXXXXXXXXXXXXXXX F   R +S+    XXXXXXXXXXXXXXXXXX   YL HELGLT+ +ILKFP  FSYDL  RI+PRT+F Q+ G S+ ++GLSR+LS SD  FC+ + +    Y  FCE+
Sbjct:   37 LQPRAKLIHSAEKEDQVTNIETQLRALDAPSAADQAYVALSTPNTPVPSTWMDTLLLLKDYGITGELLSRMASRLGILSLLNVSPARAGSLFKLLDTAISLSASQKRRVLTSRPDLLLSDVNLVNSSLESLQEAGLRRRDLQRLVVIWPRMLLLHPAYVNRVTRFLQHSPLWIPKHMLRPLLRRAPWILVFDIDSQMAPVAYWLDEYVFPFLKRPDRTRFILSAPMVLSRSRSSLNEVMEFLWSNTRLTDTQQVSVLRQFPSILTFSVDEVLQPAVDYFVKDLHFSTSEVSRLIHXXXXXXXXXXXXXXXXXXKFLVSRRISNXXXXXXXXXXXXXXXXXXXXXXKMNYLEHELGLTVHDILKFPGYFSYDLEARIIPRTKFAQENGVSISKVGLSRMLSSSDETFCKLVHMTQESYKLFCES 459          
BLAST of Gcaud1918.t1 vs. uniprot
Match: A0A6H5KUV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.870e-15
Identity = 101/343 (29.45%), Postives = 168/343 (48.98%), Query Frame = 0
Query:  243 QILSTKPGILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKFLQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKPVLAKLILSAPALLGTK-RASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFL-QVQLHFYISFCEA----RMGAFNESILPEQLESAKRVR 579
            ++L+ +P     D +  +  + VL   G+R + +K   +R P +L++ P S  +LA FL S  + +    + SL+R++PW+    ID  M P + +L    +       + +++ + P +L    R  L   +R L  +  +  +D   V+ + P +    P  +++ V++F XXXXXXXXXXXXXXXXXXXX               +  + GV +V R                     +YL+ ++GL++ ++L FPA FSY L T I PRT+F+  RG  +  +GL+  L   DA+F + + +VQ   Y  F +A    R    N  +  E+L S  + R
Sbjct:  760 EVLAPRP-----DGSTAAEAVDVLRTLGLRRRHLKMEAMRWPQLLVVPPGSFFQLAAFLASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLRIAGVAD-----VERVLRAYPKVLSASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFAL-PLSRMKDVMAFXXXXXXXXXXXXXXXXXXXXXLLGLERERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAYINKRAAVKNGLVDAEELLSGPQRR 1091          
BLAST of Gcaud1918.t1 vs. uniprot
Match: D7FXW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.990e-15
Identity = 100/347 (28.82%), Postives = 165/347 (47.55%), Query Frame = 0
Query:  243 QILSTKPGILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKFLQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWL-------TEYVIQPSRKPVLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFL-QVQLHFYISFCEARMGAFNESILPEQLESAKRVRKG 581
            ++L+ +P     D +  +  + VL   G+R + +K   +R P +L + P S  +LA FL S  + +    + SL+R++PW+    ID  M P + +L        E V++   K + A +           R  L   +R L  +  +  +D   V+ + P +    P  +++ V++F XXXXXXXXXXXXXXXXXXX                +  + GV +V R                     +YL+ ++GL++ ++L FPA FSY L T I PRT+F+  RG  +  +GL+  L   DA+F + + +VQ   Y  F +A +     + +   L  AK++  G
Sbjct:  300 EVLAPRP-----DGSTAAEAVDVLRTLGLRRRHLKMEAMRWPQLLAVPPGSFFQLAAFLASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLRIAGVVDVERVLRAYPKVLCASI-----------RGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFAL-PLSRMKDVMAFXXXXXXXXXXXXXXXXXXXXSLLGLERERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAYIN--KRAAVKNGLVDAKQLLSG 627          
BLAST of Gcaud1918.t1 vs. uniprot
Match: A0A7S1TEJ5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TEJ5_9RHOD)

HSP 1 Score: 80.1 bits (196), Expect = 3.930e-12
Identity = 125/306 (40.85%), Postives = 172/306 (56.21%), Query Frame = 0
Query:  244 ILSTKPGILDMDVNLISATLQVLF-----EDGMRFKDVKRVVLRRPHILLLHPTSISRLAKFLQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKPVLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAK-DRVSVVNS-LPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFC 542
            ++   P +L+++V   SA  + L      E G+  +++  + ++   +L + P  I R+   L    + L     +SL+RR P +   DID  M P I +L+    +P R  +        P L G    S   + R+ E+   L  + D   VV +  P +LT S E +        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      FF  +G++ + R XXXXXXXXXXXXXXXXXXX  YL   LGL+  E+L+FPA   Y L  RI PRT F++ RG  +++IGL+ IL+P+D EFC
Sbjct:  199 VIGRNPKLLELEVIDESAPARQLIIKLSDEYGISREELAYMTMKWSSLLCISPEQIDRIFSCLSDDVVGLTMRNFKSLIRRCPAVMGFDIDKQMRPVIQFLSRVGFRPVRAAIQIH-----PQLFGCNVQS--QLYRVYEYILSLGIEEDEFGVVFARYPMVLTASIE-ETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPKEEFFVGKGMASMRRXXXXXXXXXXXXXXXXXXXXYNYLERILGLSTFELLRFPAYLQYSLEERIWPRTSFVRFRGLRIQDIGLNNILAPTDEEFC 496          
BLAST of Gcaud1918.t1 vs. uniprot
Match: A0A835Z724_9STRA (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z724_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.530e-11
Identity = 88/308 (28.57%), Postives = 140/308 (45.45%), Query Frame = 0
Query:  261 ATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKFLQSSPLSL----PDYKVRSL--LRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKPVLAKLILSAPALLGTK-RASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFL-QVQLHFYISFCEARM 560
            A LQ L   G++ K V   V+R P +L   P S+  LA +L S+ + +     D    SL  LR++PW+   D++T + P   +L E +     + VL     + P +L       L   +  L  E  +  +D   VV + P +L   P +++R V   L        XXXXXXXXXXX                +    G+ ++ R                     +YL+  +GL++ ++L FPA FSY L + I PRT+F++ R   +  +GL+  L+  DA+F + + +V+   Y SF  A M
Sbjct:   60 AALQAL---GLKPKMVSMEVIRWPRLLTYSPASLMELATWLGSAEVGMRAASDDSSAVSLNVLRQAPWLAEHDLETQLRPVARYLQESLGIRDMQRVLR----AYPQILCCSITKDLEPRVWFLTEEVGINEEDVPRVVQTFP-LLFAVPVERMRGVYGLLASELLITRXXXXXXXXXXXSLLGLEPEKHVRAVVAYMRSLGIQNIGRFVSRLPPVLGYDVSNNLMPKMDYLVAMMGLSVYDVLTFPAYFSYPLESIIEPRTEFLKLRRRPIAVVGLNMALTSGDADFAKKIAKVRPELYASFKAAYM 359          
BLAST of Gcaud1918.t1 vs. uniprot
Match: A0A5J4Z0R3_PORPP (Transcription termination factor MTEF1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0R3_PORPP)

HSP 1 Score: 76.3 bits (186), Expect = 7.750e-11
Identity = 107/310 (34.52%), Postives = 157/310 (50.65%), Query Frame = 0
Query:  234 LMLSTDQQKQILSTKPGILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKFLQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKPVLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQ 543
            L L      QIL   P +L   V+ +   L VL     R +D++ ++   P +    P  +  L + L     S+   ++R ++RR+PWI T+D  T + P + +L    +   R  V     L  P  +         +M+L   +A ++      +    P I    P+++        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    R V +V+R+                    +YL + LGL+  ++L FPA FSY L+ RIVPRT F+++ G S+ + GLS  +S +D +FC+
Sbjct:  292 LSLQRPGMAQILRHCPALLLEPVDKMKVVLAVLKTLDFRDEDLQFLLKDFPSLFCAKPEDMCTLIELLCGEEFSMSRRELRPIVRRAPWILTLDPHTQVIPGLTFLRALELPSVRDAVRIGPQLLLPESVDVMTRVYEYLMKLGISQAGIRR-----LAPLYPTIFLADPDQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RSRNVQNVARVVAKNPAVLTYDVTTVLAPKVDYLENRLGLSSFDLLIFPAYFSYSLSDRIVPRTLFLKRLGISIADAGLSNAISLTDEDFCR 595          
BLAST of Gcaud1918.t1 vs. uniprot
Match: A0A7S1TDL7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDL7_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 1.380e-8
Identity = 109/227 (48.02%), Postives = 136/227 (59.91%), Query Frame = 0
Query:  318 RRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKPVLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAK-DRVSVVNS-LPRILTCSPEKQLRPVLSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTQRGVSDVSRLXXXXXXXXXXXXXXXXXXXXEYLIHELGLTMDEILKFPASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFC 542
            RR P +   DID  M P I +L+    +P R  +        P L G    S   + R+ E+   L  + D   VV +  P +LT S E +        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      FF  +G++ + R XXXXXXXXXXXXXXXXXXX  YL   LGL+  E+L+FPA   Y L  RI PRT F++ RG  +++IGL+ IL+P+D EFC
Sbjct:    1 RRCPSVMGFDIDKQMRPVIQFLSRVGFRPVRAAIQIH-----PQLFGCNVQS--QLYRVYEYILSLGIEEDEFGVVFARYPMVLTASIE-ETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPKEEFFVGKGMASMRRXXXXXXXXXXXXXXXXXXXXYNYLERILGLSTFELLRFPAYLQYSLEERIWPRTSFVRFRGLRIQDIGLNNILAPTDEEFC 219          
The following BLAST results are available for this feature:
BLAST of Gcaud1918.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IPV6_9FLOR1.720e-8947.75Transcription termination factor MTERF5, chloropla... [more]
A0A6H5KUV8_9PHAE4.870e-1529.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXW7_ECTSI5.990e-1528.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TEJ5_9RHOD3.930e-1240.85Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A835Z724_9STRA4.530e-1128.57mTERF-domain-containing protein n=1 Tax=Tribonema ... [more]
A0A5J4Z0R3_PORPP7.750e-1134.52Transcription termination factor MTEF1, chloroplas... [more]
A0A7S1TDL7_9RHOD1.380e-848.02Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 353..384
e-value: 1400.0
score: 2.8
coord: 460..492
e-value: 0.0011
score: 28.3
coord: 314..345
e-value: 1000.0
score: 3.8
coord: 426..457
e-value: 2.5E-4
score: 30.4
coord: 493..524
e-value: 0.41
score: 19.7
coord: 389..421
e-value: 0.038
score: 23.1
coord: 277..307
e-value: 1000.0
score: 3.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 238..541
e-value: 3.6E-36
score: 124.7
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 305..543
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 306..558
e-value: 1.5E-40
score: 141.0
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 305..543

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:4327..6335 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1Gcaud1918.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 4327..6335 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1918.t1 ID=Gcaud1918.t1|Name=Gcaud1918.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=583bp
MRNTGYRSRDLSHAPAINICDTLAAAIMTSLVSGMSDVGKSSRDVEAAFA
WGDSHLEDRTRGKRSALSRKHQKEETLWLRTLELGRTLLLFMRTATLVPS
SVAFCSPTLWSSFSKALIESPKTRAATCATPRFSSVQTRARLIESSERRT
QVMSIEAKLRSLGAQYAADQAHCLLATKAFDIPETWPALLSVLNEHGITN
LTLSRITSKLGVVKLLNVSPASASNLFHLFGKSLMLSTDQQKQILSTKPG
ILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKF
LQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKP
VLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILT
CSPEKQLRPVLSFLRNTLQLRYYELRKIVRAFPYILTLDVDQQLIPVVDF
FTQRGVSDVSRLVTRFPPILGNDLQNETLPTVEYLIHELGLTMDEILKFP
ASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFLQVQLH
FYISFCEARMGAFNESILPEQLESAKRVRKGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf