Gcaud1906.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1906.t1
Unique NameGcaud1906.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length630
Homology
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BLAST of Gcaud1906.t1 vs. uniprot
Match: A0A2V3J5Q5_9FLOR (Krueppel-like factor 14 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5Q5_9FLOR)

HSP 1 Score: 125 bits (314), Expect = 2.200e-26
Identity = 74/200 (37.00%), Postives = 110/200 (55.00%), Query Frame = 0 
Query:  428 KKRRRTRVEDMDPADVHVCDYEGCGKRFARRYNLTVHQRAHRNEYPFRXXXXXXXXXXXXXXXXXXXXXVHDKGGRSGGRKQRRKARRTQAPSKNLGEHPSDGAQNFP-GVSQK------QEVHKLETIEALVSTVSFDQTIMVLLGGKHPKIEKDVDVKAHLEDRCRQFAYRQQQLVGMWNSPIVMSREIFLRMCTEIL 620
            +KR RTRVEDMDPADVHVC + GCG++FA++YNLTVH+R HR E P++                     VH+K  + G R+ +RKA    A S++     SDG    P  V+Q       +E  +L  ++ALV+T+  +  ++ L       I KD+++KA LE+R + F YR+Q+L    N P  +      ++CT+ L
Sbjct:  516 RKRTRTRVEDMDPADVHVCTFHGCGRKFAKKYNLTVHERGHRGELPYKCEVLNCGKPFMWLSSFSRHLRVHEKKRKVGSRRSQRKA---VADSRS----GSDGDTGSPTNVNQSIANGPSEEAFELLKMQALVNTIGINDAVVGLTHRVQVSIGKDLNIKAQLEERWKSFGYRKQKLTNSRNLPFDIRNVRLRQLCTQTL 708
The following BLAST results are available for this feature:
BLAST of Gcaud1906.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5Q5_9FLOR2.200e-2637.00Krueppel-like factor 14 n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 444..468
e-value: 7.9E-4
score: 28.7
coord: 474..498
e-value: 6.0E-4
score: 29.1
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 444..468
e-value: 6.3E-5
score: 23.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 476..498
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 446..468
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 474..498
score: 12.112707
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 444..473
score: 13.733788
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 467..500
e-value: 3.3E-8
score: 35.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 444..466
e-value: 3.6E-10
score: 41.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 500..517
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 521..539
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..437
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 496..539
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..262
NoneNo IPR availablePANTHERPTHR24377:SF762ZINC FINGER PROTEIN 641coord: 451..532
coord: 409..502
NoneNo IPR availablePANTHERPTHR24377IP01015P-RELATEDcoord: 451..532
coord: 409..502
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 444..498

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1086_length_13996_cov_4.532255contigNODE_1086_length_13996_cov_4.532255:10018..12372 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1906.t1Gcaud1906.t1Gracilaria caudata M_176_S67 malemRNANODE_1086_length_13996_cov_4.532255 10018..12372 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1906.t1 ID=Gcaud1906.t1|Name=Gcaud1906.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=630bp
MSALEYILESYDNRLPTKGNFRTNSRDETAIALRGVKCIVASDPLVVDLV
ASSSPPLFVFSEYFVVRPRYSLVSAETLLSSTQDKDFGSHCVTSCHEANI
ATTAGFPGVYPCAALATHSPTTAQAISRGNPGKDNTELVDGENGRVLRPD
SITAGLPDVGQRFEEVAEVEKIYGGDDVGNTGPPTEGGREISEVPFDPAS
LPDDDYLDLMFGAMPKEDRVRLSTGQTQASLLRELLPDLPATDIPGHGPQ
AGGQAVRDNETVPMSISDDDYMDQMFVPLPPEDKLRLSANQTRESLFREL
LGPDIVADAPSVCEGSPHEDVPSKSPAGNPNAAGQYGPKMANNETREAYG
AGVCAQVPHLMVCNEIPPQSQGGIPHRQDAEGEVARVSKAPHQQSQDNPP
GPVKRAKRKRSSGKRVAKSAQGGQPRPKKRRRTRVEDMDPADVHVCDYEG
CGKRFARRYNLTVHQRAHRNEYPFRCDVPDCGKPFMWHSSLSRHLRVHDK
GGRSGGRKQRRKARRTQAPSKNLGEHPSDGAQNFPGVSQKQEVHKLETIE
ALVSTVSFDQTIMVLLGGKHPKIEKDVDVKAHLEDRCRQFAYRQQQLVGM
WNSPIVMSREIFLRMCTEILGADRMETDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf