Gcaud1904.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1904.t1
Unique NameGcaud1904.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Homology
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A2V3ITE6_9FLOR (Ferritin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITE6_9FLOR)

HSP 1 Score: 382 bits (982), Expect = 2.840e-132
Identity = 199/257 (77.43%), Postives = 221/257 (85.99%), Query Frame = 0
Query:    1 MAAFVTPSVFSSGSSSFALRVSTARST--PFR-ASPTRFARVRSPVMGLDDVTSIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTLRE 254
            M+AFV  S F   +S+F    + AR+   P R A PT+ A    P M   DVTSIDFSKVNINTAG+NLAGLVFTPESETDA+VKTRVDVGYT  QE+AVNRHINVEYTAMYAYHAIW+YFDRDTVALPGFAHYFN+QSKEEREHA+EFMKYQN+RGG VQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKL+DLH VA + +D QMQDF+E YL+HQ+ +IKTAADY++QLKRVGTPHGVYHIDL LRE
Sbjct:    1 MSAFVPASGFVLRTSAFTHGGAQARAQDQPSRFAQPTKRAARGVPRMVSSDVTSIDFSKVNINTAGQNLAGLVFTPESETDAIVKTRVDVGYTPAQEEAVNRHINVEYTAMYAYHAIWAYFDRDTVALPGFAHYFNEQSKEEREHAEEFMKYQNKRGGVVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLVDLHKVAAQQSDVQMQDFIEGYLTHQVDSIKTAADYLSQLKRVGTPHGVYHIDLALRE 257          
BLAST of Gcaud1904.t1 vs. uniprot
Match: R7QG34_CHOCR (Ferritin n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG34_CHOCR)

HSP 1 Score: 324 bits (830), Expect = 2.880e-109
Identity = 170/251 (67.73%), Postives = 196/251 (78.09%), Query Frame = 0
Query:    3 AFVTPSVFSSGSSSFALRVSTARSTPFRASPTRFARVRSPVMGLDDVTSIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTLR 253
            AFV+P   SS      LR S + S   R      +R  +  M  DD +SIDF KV+I  AGENL+GL+FTPESE+   +KTR DVGYT +QE AVNRHINVEYTA YAYHAIW+YFD+DTVALPGFA YF +QS+EER HA EFMKYQN+RGG+V+LQPIAVPEM FT EDGTSDA+YAMDLHLQLEKFV+HKL  LH VA +A D QMQD ++ YL+HQI AIKTAADYVAQLKRVGTPHG+YH DL L+
Sbjct:    5 AFVSPVPLSS------LRPSLSTSLTQRRPSATPSRTATRAMMADDRSSIDFGKVDIKGAGENLSGLIFTPESESP--LKTRCDVGYTEQQEAAVNRHINVEYTASYAYHAIWAYFDKDTVALPGFAKYFAEQSEEERTHAAEFMKYQNKRGGSVELQPIAVPEMTFTQEDGTSDAVYAMDLHLQLEKFVFHKLRALHKVAQDAGDEQMQDMIDDYLTHQIDAIKTAADYVAQLKRVGTPHGIYHFDLNLQ 247          
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A7S0ZGF5_9RHOD (Ferritin n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGF5_9RHOD)

HSP 1 Score: 258 bits (660), Expect = 2.470e-83
Identity = 125/210 (59.52%), Postives = 162/210 (77.14%), Query Frame = 0
Query:   45 GLDDVTSIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTLRE 254
            G DD  +IDFS VN+  AG+   G++F PE ++ + V +R  V ++AK E A+N  +NVEYTA YAYHA+ +YFDRDTVALPGF+ +F++QS+EER HA+  MKYQNRRGG ++ +P+A+PEM+F   DGTSDA+YAMDLHLQLEKFVY KL+D+H  A E NDP+M +F+E  L  Q+ AIKTAADYVAQL+R+GT HGV+H D  L E
Sbjct:   47 GADD--TIDFSSVNLKEAGKEFEGMIFKPEGDSGSQVPSRARVNFSAKCEAAINNQVNVEYTASYAYHALMAYFDRDTVALPGFSKFFSEQSEEERGHAEHLMKYQNRRGGRLEFKPVALPEMQFDNLDGTSDAMYAMDLHLQLEKFVYKKLLDVHATAEEDNDPEMTNFIEDMLEEQVQAIKTAADYVAQLRRIGTGHGVWHFDKELAE 254          
BLAST of Gcaud1904.t1 vs. uniprot
Match: M2XSP3_GALSU (Ferritin n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSP3_GALSU)

HSP 1 Score: 237 bits (605), Expect = 1.990e-74
Identity = 116/171 (67.84%), Postives = 138/171 (80.70%), Query Frame = 0
Query:   82 KTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTL 252
            +TRV+VGY  + E+A+N HI VEYTA Y YH ++++FDRDTVALPGFA YFN+QS EER+HA EF++YQN RGG V L+PIA+PEM F   D TSD +YAMDLHLQLEK+VY KL+ LH VA EA D Q+QDFVE YL HQ+GAIK AA+YVAQ+KRVGT HGVY ID  L
Sbjct:  128 ETRVNVGYDCRCEEALNNHICVEYTASYVYHGLFAFFDRDTVALPGFAKYFNEQSIEERQHAHEFIQYQNARGGRVVLKPIALPEMGFESVDATSDVLYAMDLHLQLEKYVYRKLLQLHKVATEAEDVQLQDFVEKYLEHQVGAIKVAAEYVAQIKRVGTGHGVYDIDRKL 298          
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A1X6PIJ5_PORUM (Ferritin n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIJ5_PORUM)

HSP 1 Score: 236 bits (601), Expect = 2.430e-74
Identity = 116/199 (58.29%), Postives = 151/199 (75.88%), Query Frame = 0
Query:   51 SIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHID 249
            +IDFS V++  AG   +G++F+P++  DA + +R +VG++   +DAVN  I VEYTA YAYHA+++YF+RDTVALPGFA YF +QS EER HA EFM+Y N+RGG V L+P+AVP M F  +DGTSDA+YAMDLHLQLEKFV+HKL ++   A   ND  + D ++ YL  Q+ A+K AAD VAQLKRVGTPHGV+H D
Sbjct:   54 TIDFSDVDLTEAGTQFSGMIFSPDT-ADAPL-SRANVGFSENCQDAVNNQIQVEYTASYAYHAMFAYFNRDTVALPGFAKYFEEQSLEERTHADEFMRYMNKRGGQVVLKPLAVPSMSFNNKDGTSDAVYAMDLHLQLEKFVWHKLEEVAAAANADNDLSLADLIDDYLQEQVSAVKKAADMVAQLKRVGTPHGVWHFD 250          
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A7S0ML14_9CRYP (Ferritin (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0ML14_9CRYP)

HSP 1 Score: 235 bits (600), Expect = 5.200e-74
Identity = 119/204 (58.33%), Postives = 151/204 (74.02%), Query Frame = 0
Query:   52 IDFSKVNINTAGEN-LAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTLRE 254
            IDFSKV  N   E+  +G++F PE   +   + RVD  +  + E A+N HINVE+TA YAYHA+++YFDRDTVAL GFA YF  QS EER+HA++FMKYQN+RGG V L+P+AVPEM+FT  DG SDA+YAM+L LQLEKFVY KL  LH + GEA DPQ  D +E YL  Q+ AIKT + YVAQ++R+GT HGV+ +D  L+E
Sbjct:   73 IDFSKVGFNDGSESGFSGMIFRPEDSEEPESRCRVD--WDVRCEKALNDHINVEFTASYAYHALFAYFDRDTVALQGFAEYFKKQSNEERDHAEQFMKYQNKRGGKVVLKPVAVPEMQFTRVDGASDALYAMELALQLEKFVYGKLKQLHALGGEATDPQFCDEIEKYLGDQVSAIKTISGYVAQIRRLGTGHGVWDLDRALQE 274          
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A5J4Z7Q2_PORPP (Ferritin n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7Q2_PORPP)

HSP 1 Score: 234 bits (596), Expect = 1.480e-72
Identity = 124/217 (57.14%), Postives = 150/217 (69.12%), Query Frame = 0
Query:   40 RSPVM--GLDDVTSIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTLRE 254
            RS VM  G      IDF+ V++  AG+   G+VF PE      V TR  V  +   E+A+N  INVEYTA YAYHA+ +YF RDTVALPGFA YF ++S EER HAQ F+ YQN +GG VQ +PIAVP M F   DGTSDA+YAMDLHLQLEKFVY KLMD+ N A EA DP+M  FVE  L+ Q  A+K +AD+VAQL+R+GT HG++H D  L E
Sbjct:  120 RSVVMQTGNGGADRIDFADVDVQEAGKEFQGMVFQPEDGGTVAVATRCRVLLSDACEEALNNQINVEYTASYAYHALSAYFGRDTVALPGFAKYFKEESSEERSHAQMFIDYQNSKGGRVQFKPIAVPTMHFENLDGTSDALYAMDLHLQLEKFVYKKLMDVWNTADEAKDPEMTQFVEDMLAEQRLAVKKSADFVAQLRRIGTGHGIWHFDRELAE 336          
BLAST of Gcaud1904.t1 vs. uniprot
Match: J9V7R2_NEOYE (Ferritin n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=J9V7R2_NEOYE)

HSP 1 Score: 231 bits (589), Expect = 1.750e-72
Identity = 116/199 (58.29%), Postives = 149/199 (74.87%), Query Frame = 0
Query:   51 SIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHID 249
            +IDFS V++  AG   +G+VFTP++  DA + +R +VG++   +DAVN  I VEYTA YAYHA+++YF+RDTVALPGFA YF +QS EER HA EFM+Y N+RGG V L+P+AVP M F   DGTSDA+YAMDLHLQLEKFV+ KL ++   A   ND  + D ++ Y+  Q+ A+K AAD VAQLKRVGTPHGV+H D
Sbjct:   57 TIDFSDVDVTDAGAQFSGMVFTPDT-ADAPL-SRANVGFSQACQDAVNNQIQVEYTASYAYHAMFAYFNRDTVALPGFAKYFEEQSLEERTHADEFMRYMNKRGGQVVLKPLAVPSMSFNNTDGTSDAVYAMDLHLQLEKFVWAKLEEVAAAANADNDLSLADLIDDYVQEQVQAVKKAADMVAQLKRVGTPHGVWHFD 253          
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A7S1XC19_9RHOD (Ferritin n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XC19_9RHOD)

HSP 1 Score: 228 bits (581), Expect = 4.530e-72
Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 0
Query:   52 IDFSKVNINTAGENLAGLVFTPESET-DAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDLTLRE 254
            IDFS+VN+  AG+   G++F PE ++ D +  +R ++G++   +DA+N  INVEYTA Y YHA+W++F RDTVALPGFA +F DQS EER HA + M YQ +RGG V L+P+AVP + F   +  SDA +A+DLHLQLEKF Y KL ++H VA   +DPQMQD VE YL+ Q+ AIK AAD +AQ+KR GT HG+YHID  L +
Sbjct:    1 IDFSEVNLAEAGKACLGMIFRPEEDSEDQITDSRCNIGWSQPLQDAINNQINVEYTASYVYHALWAFFQRDTVALPGFAQFFLDQSDEERTHATQLMTYQTKRGGKVVLKPVAVPSIAFDRLNSISDAQFAVDLHLQLEKFNYAKLREVHRVAQSHDDPQMQDEVEKYLAEQLDAIKQAADLLAQIKRCGTGHGIYHIDRVLSQ 204          
BLAST of Gcaud1904.t1 vs. uniprot
Match: A0A7S4ULG2_GUITH (Ferritin n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4ULG2_GUITH)

HSP 1 Score: 228 bits (581), Expect = 3.880e-71
Identity = 127/233 (54.51%), Postives = 158/233 (67.81%), Query Frame = 0
Query:   30 RASPTRFARVRSPVMGLDDVTSIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRHINVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQNRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLHNVAGEANDPQMQDFVEHYLSHQ--------IGAIKTAADYVAQLKRVGTPHGVYHIDLTLRE 254
            RA P    R+R+     D V  IDF KV  + A   +  LVF PE E +   ++R  V +  K E A+N HINVEYTA YAYHA++SYFDRDTVAL GFA +F DQS+EER HA++FMKYQN RGG V L+P+AVP+M+F+  DGTSDA+YA +L L LEKFVY KL+DLH +  E  DPQ  D +E+YL  Q        + AIKT A+YVAQ+KRVGT HGV+ +D  L E
Sbjct:   40 RAGPAA-VRIRAAKEQPDQV--IDFGKVGFSDAENQMRSLVFQPE-EGETEPESRCRVNWDIKLEQALNDHINVEYTASYAYHALFSYFDRDTVALKGFAKFFADQSQEERGHAEQFMKYQNTRGGKVVLKPLAVPDMQFSRVDGTSDALYAFELALMLEKFVYRKLLDLHALGAECEDPQFCDEIENYLGDQQDETRPCKVRAIKTMAEYVAQIKRVGTGHGVWDLDKKLEE 268          
The following BLAST results are available for this feature:
BLAST of Gcaud1904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITE6_9FLOR2.840e-13277.43Ferritin n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
R7QG34_CHOCR2.880e-10967.73Ferritin n=1 Tax=Chondrus crispus TaxID=2769 RepID... [more]
A0A7S0ZGF5_9RHOD2.470e-8359.52Ferritin n=1 Tax=Timspurckia oligopyrenoides TaxID... [more]
M2XSP3_GALSU1.990e-7467.84Ferritin n=1 Tax=Galdieria sulphuraria TaxID=13008... [more]
A0A1X6PIJ5_PORUM2.430e-7458.29Ferritin n=1 Tax=Porphyra umbilicalis TaxID=2786 R... [more]
A0A7S0ML14_9CRYP5.200e-7458.33Ferritin (Fragment) n=1 Tax=Cryptomonas curvata Ta... [more]
A0A5J4Z7Q2_PORPP1.480e-7257.14Ferritin n=1 Tax=Porphyridium purpureum TaxID=3568... [more]
J9V7R2_NEOYE1.750e-7258.29Ferritin n=1 Tax=Neopyropia yezoensis TaxID=2788 R... [more]
A0A7S1XC19_9RHOD4.530e-7254.90Ferritin n=1 Tax=Compsopogon caeruleus TaxID=31354... [more]
A0A7S4ULG2_GUITH3.880e-7154.51Ferritin n=3 Tax=Guillardia theta TaxID=55529 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008331Ferritin/DPS protein domainPFAMPF00210Ferritincoord: 95..239
e-value: 1.3E-28
score: 99.8
IPR012347Ferritin-likeGENE3D1.20.1260.10coord: 64..254
e-value: 1.1E-61
score: 209.8
NoneNo IPR availablePANTHERPTHR11431:SF75FERRITINcoord: 83..253
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..254
NoneNo IPR availableCDDcd01056Euk_Ferritincoord: 94..249
e-value: 9.85941E-63
score: 191.988
IPR001519FerritinPANTHERPTHR11431FERRITINcoord: 83..253
IPR009040Ferritin-like diiron domainPROSITEPS50905FERRITIN_LIKEcoord: 87..240
score: 32.948044
IPR009078Ferritin-like superfamilySUPERFAMILY47240Ferritin-likecoord: 86..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1086_length_13996_cov_4.532255contigNODE_1086_length_13996_cov_4.532255:6223..6987 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1904.t1Gcaud1904.t1Gracilaria caudata M_176_S67 malemRNANODE_1086_length_13996_cov_4.532255 6223..6987 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1904.t1 ID=Gcaud1904.t1|Name=Gcaud1904.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MAAFVTPSVFSSGSSSFALRVSTARSTPFRASPTRFARVRSPVMGLDDVT
SIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRH
INVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQ
NRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLH
NVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDL
TLRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008331Ferritin_DPS_dom
IPR012347Ferritin-like
IPR001519Ferritin
IPR009040Ferritin-like_diiron
IPR009078Ferritin-like_SF