Gcaud1894.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1894.t1
Unique NameGcaud1894.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length281
Homology
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A2V3IHL5_9FLOR (SNF1-related protein kinase regulatory subunit beta-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHL5_9FLOR)

HSP 1 Score: 272 bits (696), Expect = 2.770e-87
Identity = 138/235 (58.72%), Postives = 167/235 (71.06%), Query Frame = 0
Query:   46 SKLWSASAATTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYDQAPAND-FANDPPQLPPFLGERYLKPLPDDMSPSIAAAA-QTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTSSNQ 278
            S L  A+A     ++   +DDLVPTMF+W+FGG  V VAG WD+W  KTPMSKNGQ H++LVYIPCGQ QFKY+VD+TWQCAPNLPT TD+ GN NNL+T+   +PQFD++  L++ PP SP SSYDQ+  N   + DPP LPPFL  R LKPLPDD+SP +A  +   PS        K      S RPFFSHV+VDHLYVARS     +RSFSH +RHYGK+INTVFVTS+ Q
Sbjct:   85 SSLHPAAATDAQPEEEPRDDDLVPTMFHWSFGGRHVFVAGAWDDWKLKTPMSKNGQHHMALVYIPCGQFQFKYFVDNTWQCAPNLPTTTDAHGNNNNLITILPVDPQFDVSTPLTEHPPSSPTSSYDQSTLNSSLSTDPPLLPPFLEHRCLKPLPDDISPKVAPLSPHAPSVI-----TKHHPQHRSSRPFFSHVSVDHLYVARSSN-PSLRSFSHTSRHYGKLINTVFVTSAPQ 313          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A200PVE1_9MAGN (5-AMP-activated protein kinase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PVE1_9MAGN)

HSP 1 Score: 112 bits (280), Expect = 1.150e-25
Identity = 69/222 (31.08%), Postives = 103/222 (46.40%), Query Frame = 0
Query:   56 TASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYDQAP--ANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTS 275
            T  +D L E+  +PTM  W+FGG EV V G WDNW +K P+ ++G+    +  +P G + +++ VD  W+ AP+LP   D +GN  N++ +    P+ D+       PP SP SSY  +   + D+A +PP +PP L    L   P        +    PS SR                   HV ++HLYV +      V +F    R   K +  V   S
Sbjct:  100 TNYEDGLCEEQGIPTMITWSFGGKEVVVEGSWDNWKSKMPLQRSGKDFTIMKVLPSGFYHYRFIVDGEWRYAPDLPWAHDDMGNAYNILDLQDYVPE-DLESISGFEPPQSPESSYTNSHLGSEDYAKEPPLVPPHLQTTLLNAPP--------SCLDNPSLSRP-----------------QHVALNHLYVHKEKSSQSVVAFGSTHRFLAKYVTVVLYKS 295          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A8B8K5W3_ABRPR (SNF1-related protein kinase regulatory subunit beta-2-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8K5W3_ABRPR)

HSP 1 Score: 108 bits (269), Expect = 4.040e-24
Identity = 69/223 (30.94%), Postives = 104/223 (46.64%), Query Frame = 0
Query:   55 TTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYD--QAPANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTS 275
            TT+  + +  +  +PTM  W++ G EV V G WDNW  + P+ ++G+    +  +P G +QF++ VD  W+CAP+LP   D  GN  N++ +    P+ D+    S  PP SP SSY+  Q  + D+A +PP +PPFL    L        PS     Q P  SR                   HV ++HLY+ +      V +     R   K +  V   S
Sbjct:   95 TTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKARMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRCAPDLPWAKDDAGNAYNILDLQDYVPE-DIGSISSFEPPKSPESSYNNLQLSSEDYAKEPPLVPPFLQMTLLN------VPSANMEIQ-PLISRP-----------------QHVVLNHLYMQKGKSSPSVVALGTTHRFLAKYVTVVLYKS 292          
BLAST of Gcaud1894.t1 vs. uniprot
Match: B8LP92_PICSI (AMPKBI domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LP92_PICSI)

HSP 1 Score: 107 bits (268), Expect = 5.520e-24
Identity = 71/220 (32.27%), Postives = 105/220 (47.73%), Query Frame = 0
Query:   55 TTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYD---QAPANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTV 271
            ++AS+D   E   +PTM  W++GG +V V G WDNW  + P+ + G+    ++ +P G +Q+K+ VD  W+  P+LP  TD  GN  N++ V    P+ ++       PP SP SSY+    AP  DFA DPP +PP L    L   P ++ P +A                       PRP   HV ++HLYV +      V +     R   K +  V
Sbjct:   93 SSASEDLFYERG-IPTMITWSYGGNDVAVEGSWDNWTLRKPLHRAGKDFTIMMVLPSGVYQYKFIVDGEWRYVPDLPWITDETGNVKNILDVQDYVPE-NLESVAEFEPPQSPDSSYNGPFPAP-EDFAKDPPAVPPHLHLTLLNVPPAEV-PGVA-----------------------PRP--QHVVLNHLYVGKEKSSQSVLALGLTHRFRSKYVTVV 283          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A8B9AAG3_PHODC (SNF1-related protein kinase regulatory subunit beta-2-like n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AAG3_PHODC)

HSP 1 Score: 107 bits (267), Expect = 5.870e-24
Identity = 68/213 (31.92%), Postives = 99/213 (46.48%), Query Frame = 0
Query:   65 DDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYDQAP--ANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTS 275
            D  +PTM  W+ GG EV V G WDNW TK P+ K+G+    +  +P G +Q+++ VD  W+ AP++P   D +GN  N++ +     + D+       PP SP SSY+  P  + DFA +PP +PP L    L    D  SPS        S SR                   HV ++HLY+ +     P+ +     R   K +  V   S
Sbjct:   89 DQGIPTMITWSHGGKEVFVEGSWDNWKTKKPLQKSGKDFTIMKVLPSGFYQYRFIVDGEWRYAPDIPWMHDDIGNAYNILDLKEFVAE-DIESIAGFEPPQSPDSSYNNWPLGSEDFAKEPPIVPPQLHLTLLNAPADIESPS--------SLSRP-----------------PHVVLNHLYIQKGRSGQPMVALGATRRFLSKYVTVVLYKS 275          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A7J7D960_TRIWF (SNF1-related protein kinase regulatory subunit beta-2-like n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D960_TRIWF)

HSP 1 Score: 107 bits (266), Expect = 1.670e-23
Identity = 62/195 (31.79%), Postives = 99/195 (50.77%), Query Frame = 0
Query:   55 TTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYD--QAPANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVAR 247
            T    + +  +  +PTM  W++GG EV V G WDNW  + P+ ++G+ +  +  +P G +Q+++ VD  W+ AP+LP   D +GN  NL+ +    P+ D+    S  PP SP +SY+  Q  + DFA +PP +PP L    L  +P       A+  + PS                P P   HV ++HLY+ +
Sbjct:   86 TAGGYEDMCNEQAIPTMITWSYGGKEVAVEGSWDNWKIRVPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYAPDLPWAQDDVGNAYNLLDLKDYVPE-DLGSISSFEPPQSPEASYNSLQLGSEDFAKEPPLVPPHLQTTLLN-VP-------ASCMEIPS----------------PLPRPQHVVLNHLYMQK 255          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A0A0LYK2_CUCSA (AMPKBI domain-containing protein n=6 Tax=Cucumis TaxID=3655 RepID=A0A0A0LYK2_CUCSA)

HSP 1 Score: 105 bits (261), Expect = 7.190e-23
Identity = 70/228 (30.70%), Postives = 107/228 (46.93%), Query Frame = 0
Query:   50 SASAATTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYDQA--PANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTS 275
            S   ++ A +D  +E   +PTM  W++GG EV + G WD W T+ P+ ++G+    +  +P G +Q+++ VD  W+ AP LP   D  GN  N++ +    P+ D+    S  PP SP SSYD     ++D+A +PP +PP L    L       SPS     + P+C                RP   HV ++HLY+ R      V +     R   K +  V   S
Sbjct:  102 SQMQSSLAYEDTCNEQS-IPTMITWSYGGKEVTIEGSWDCWRTRMPLQRSGKDFTLMKVLPAGVYQYRFLVDGQWRYAPELPWAQDDAGNAYNVLDLQDNVPE-DIESISSFEPPQSPDSSYDNLLLGSDDYAKEPPLVPPHLQRTLLN------SPS--TYMEIPTCLS--------------RP--QHVVLNHLYMQRGKGGPSVVALGTTHRFLSKYVTVVLYKS 303          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A175YIL9_DAUCS (AMPKBI domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YIL9_DAUCS)

HSP 1 Score: 103 bits (256), Expect = 1.460e-22
Identity = 66/224 (29.46%), Postives = 104/224 (46.43%), Query Frame = 0
Query:   55 TTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYD--QAPANDFANDPPQLPPFLGERYLKPLPDDMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTSS 276
            TT++ + +  +  +PTM  W++   EV V G WD+W T+ P+ ++G+    L  +P G +++++ VD  W+ AP+LP   D  GN  N++ +    P+ D+       PP SP SSY+  Q  A DFA +PP +PP L    L        PS       PS                 RP   HV ++HLY+ +      V +     R + K +  V   S+
Sbjct:   57 TTSAYEDISSEQGIPTMITWSYDANEVFVEGSWDDWKTRKPLQRSGKDFTILKVLPSGVYRYRFIVDGQWRYAPDLPWTQDDAGNAYNILDLQEYVPE-DIESIAGFGPPQSPDSSYNNSQLGAEDFAKEPPIVPPHLQMTLLN------VPSQPMEIPPPS-----------------RP--QHVVLNHLYMQKGRSSSAVVALGSTHRFFSKYVTVVVYKST 254          
BLAST of Gcaud1894.t1 vs. uniprot
Match: A0A7S3EJW8_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJW8_9RHOD)

HSP 1 Score: 102 bits (253), Expect = 1.580e-22
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   62 LDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYDQAPAN 177
            +D D  VPT F WN GG +++V G WD W TK P+S+ G +  +++ +P G+ Q+KY VD  W+     PT  D  GN NN+V V      FD   + +   PLSPL +YD +  N
Sbjct:   20 VDLDSPVPTTFSWNLGGQQIYVTGAWDQWQTKQPLSRFGNEFTAVLLLPVGKFQYKYIVDGEWRPHREQPTERDEHGNLNNVVEVVEQKSAFDPNEAPTAAEPLSPLETYDDSVPN 135          
BLAST of Gcaud1894.t1 vs. uniprot
Match: UPI001262CB01 (SNF1-related protein kinase regulatory subunit beta-2 n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001262CB01)

HSP 1 Score: 103 bits (257), Expect = 1.680e-22
Identity = 64/212 (30.19%), Postives = 99/212 (46.70%), Query Frame = 0
Query:   68 VPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNGQQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPNPQFDMAPSLSDTPPLSPLSSYD--QAPANDFANDPPQLPPFLGERYLKPLPDDMS--PSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGECDPVRSFSHNARHYGKIINTVFVTS 275
            +PTM  W++ G EV V G WDNW T+ P+ ++G+    +  +P G +Q+++ VD  W+ AP+LP   D +GN  N++ +    P+ D+    S  PP SP  SY+  Q  A DFA +PP +PP +    L     +M   P +A                        RP   HV ++HLY+ +      V +   + R   K +  V   S
Sbjct:   93 IPTMITWSYDGQEVTVEGSWDNWKTRIPLQRSGKDFTIMKVLPSGVYQYRFLVDGQWRYAPDLPWAQDDVGNSYNILDLQEYVPE-DLESISSFEPPQSPEMSYNNLQLTAEDFAKEPPLVPPHMQMTLLNVPASNMEIPPPLA------------------------RP--QHVVLNHLYMQKGNSGPSVVALGSSHRFLAKYVTVVLYKS 277          
The following BLAST results are available for this feature:
BLAST of Gcaud1894.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHL5_9FLOR2.770e-8758.72SNF1-related protein kinase regulatory subunit bet... [more]
A0A200PVE1_9MAGN1.150e-2531.085-AMP-activated protein kinase n=1 Tax=Macleaya co... [more]
A0A8B8K5W3_ABRPR4.040e-2430.94SNF1-related protein kinase regulatory subunit bet... [more]
B8LP92_PICSI5.520e-2432.27AMPKBI domain-containing protein n=1 Tax=Picea sit... [more]
A0A8B9AAG3_PHODC5.870e-2431.92SNF1-related protein kinase regulatory subunit bet... [more]
A0A7J7D960_TRIWF1.670e-2331.79SNF1-related protein kinase regulatory subunit bet... [more]
A0A0A0LYK2_CUCSA7.190e-2330.70AMPKBI domain-containing protein n=6 Tax=Cucumis T... [more]
A0A175YIL9_DAUCS1.460e-2229.46AMPKBI domain-containing protein n=2 Tax=Daucus ca... [more]
A0A7S3EJW8_9RHOD1.580e-2240.52Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
UPI001262CB011.680e-2230.19SNF1-related protein kinase regulatory subunit bet... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 61..150
e-value: 1.9E-22
score: 80.9
IPR032640AMP-activated protein kinase, glycogen-binding domainPFAMPF16561AMPK1_CBMcoord: 68..149
e-value: 2.7E-26
score: 91.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..33
e-value: 1.3E-9
score: 37.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..59
e-value: 5.9E-10
score: 40.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..183
NoneNo IPR availableCDDcd02859E_set_AMPKbeta_like_Ncoord: 69..146
e-value: 2.16681E-26
score: 96.8992
IPR043554SNF1-related protein kinase regulatory subunit betaPANTHERPTHR46316SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1coord: 44..274
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..41
IPR037256ASC domain superfamilySUPERFAMILY160219AMPKBI-likecoord: 163..272
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 66..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_807_length_17687_cov_4.345135contigNODE_807_length_17687_cov_4.345135:1708..3326 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1894.t1Gcaud1894.t1Gracilaria caudata M_176_S67 malemRNANODE_807_length_17687_cov_4.345135 1708..3326 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1894.t1 ID=Gcaud1894.t1|Name=Gcaud1894.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MRGDRELRGKLHAFDQHLNMILGDVEETVTTTDVDPETFEELLKTSKLWS
ASAATTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNG
QQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPN
PQFDMAPSLSDTPPLSPLSSYDQAPANDFANDPPQLPPFLGERYLKPLPD
DMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGE
CDPVRSFSHNARHYGKIINTVFVTSSNQHA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR032640AMPK1_CBM
IPR001163LSM_dom_euk/arc
IPR043554KINB
IPR010920LSM_dom_sf
IPR037256ASC_dom_sf
IPR014756Ig_E-set