Gcaud1893.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1893.t1
Unique NameGcaud1893.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length347
Homology
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3IMC1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 306 bits (783), Expect = 4.200e-99
Identity = 161/346 (46.53%), Postives = 225/346 (65.03%), Query Frame = 0
Query:    1 MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNFNLQRAGNVSLQNGDVRCSKKAVYRTDFIVLSETRKLPESGVHMGCMSDDFCVFCFQQGNFTFLSEPFLRDMESGLRSGEIDIELEYLKTELLFNSTGLLVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCISEAKSK 346
            M  IALK+Q+VSLIITIISF  E +F++AL    ++R+ Q L + K + +RN++ R+  +   S LLF  LEIIVSFF+DP  L+ F+S PC+ +D + R    Q +FREAD +E  CQ  R NFN  R GNVSL +G VRCSKKA Y  D +  SET+KLP S   + C  +  CVF F+Q N T+ S   L D+ + LRSG +D E+ +LKTELLF+S+ +L  FA RA DAF + V DP+E+RRR FLGSA++ CPFV E ID T VP  ++  L+ +W  +++++ L     R V F+V N LHWA+ V++R  E V+++P ++   ED    + +SE  +K
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVLRLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGET-CVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSERGNK 345          
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3J5A0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 167 bits (422), Expect = 6.260e-45
Identity = 123/363 (33.88%), Postives = 181/363 (49.86%), Query Frame = 0
Query:    1 MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIISRTPQDQA-QFREADIVESACQVQRKNFNLQRAGNVSLQNGDVRCSKKAVYR------------TDFIVLSETRKLPESGVHMGCMSDDFCVFC----FQQGNF---TFLSEPFLRDMESGLRSGEIDIELEYLKTELLF--NSTGLLVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCIS 341
            M +I LKSQ+VSLI TIIS   E   L AL +  N  +   L K   V++  HQ R+  L   +   FF +E+++SF++DPA    F+S PC+ ++ ++R   D      E  IV S  +    N  L R GN S++   V C++ A               T   V SE    P     + C +D FCV      +Q  +     + S+ F  D  S L+     I+  +L T +    N+T LL  FA+R   A+ +N+ DP+E+RR  FLGS R TC F   T +ATEVP F+IV +   W  S+  YA+    +R V +++ N +HWA    RR  E V  +P++S   E+ H V+ +S
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFL-RVGNYSMETRKVECAESATLMFTLEPHVSLPIGTAAAVSSEN---PFPDPLLKC-ADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIK--FLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQF-QRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVS 355          
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3J6F3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 153 bits (386), Expect = 6.150e-40
Identity = 111/349 (31.81%), Postives = 169/349 (48.42%), Query Frame = 0
Query:    1 MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNFNLQRAGNVSLQNGDVRCSKKAVYRTDFIVLSETRKLPESGVHMGCMSDD----FCVFCFQQGNFTFLSEPFLRDMESGLRSGEIDIELEYLKTELLFNSTGLLVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCISEAKS 345
            M +I LK+ FVS+I+T++S  AE   LS L    NL + + L + +SV +R H RR+  L+   +  FF LE++ SF+ DP    +     CI      +   D  QF  A  +   C+        Q  GN S +   V CS +A+Y     +  ET +   + V  GC+S       CVF  Q+GN + +S PF  D  S L        L ++ TEL F     +  FA RA +AF QN+  P  +RR  + G++   C F      AT VP  +IV L   W  ++  +A +    R V F++D+ +HWA    R   + + +NP L+   +D+  +V IS ++S
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITASNSVKDSGDSTQFLRASDILVECRRLDNGTITQFGGNFSSRTQQVECSTEAMYTHP--LGDETSEEIVADVPFGCVSGGEEGAACVFVQQRGNLSLISAPFFLDELSILPD-----TLPHIITELHFTPPSNVSLFATRATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRGSATTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVRAADDPLGDNPVLTGLMQDDKTLVHISTSES 342          
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 145 bits (366), Expect = 1.990e-36
Identity = 113/369 (30.62%), Postives = 179/369 (48.51%), Query Frame = 0
Query:    4 IALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNFNLQRAGNVSLQ---NGDVRCSKKAVYR------TDFIVLSETRK------------LPESGVHMGCMSDDFCVFCFQQG----NFT--FLSEPFLRDMESGLRSGEIDIELEYLKTELLFNSTGLLVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCISEAKS 345
            I LKSQFVSLI+T+IS  AE     AL       +   L K + V++R H+ R+  L   ++++F  LE+I+SFF+DPA   +FR+  C+ +D I           + D +   C   +K+  LQRAGN SL       VRC K A+Y         F + + TR             LP   V     ++  C    Q       FT  +LS   +R+ E G    +  + + +L+T + +N++GL  +FA+R   A+ ++V DP EIR+R F+G  RR C F     D T VP  ++  +V +W  S + +A      R++ +++ + LHWA    R   E +  NP ++   E    ++ +S + S
Sbjct:    4 IPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAA-VRESEVGPLVNQ-QVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVSGSAS 370          
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3J5C2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 126 bits (317), Expect = 1.160e-29
Identity = 106/357 (29.69%), Postives = 163/357 (45.66%), Query Frame = 0
Query:    1 MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIISRTPQDQAQFREADIVESACQVQRKNFNLQRAGNVS----LQNGD-------VRCSKKAVYRTDFIVLSETRKLPESGVHMGCMSDDFCVFCFQQGN-FTFLSEPFLRDMESGLRSGEIDIELEYLKTELLFNSTGLLVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCISEAKS 345
            M +I LKSQ+ SLI+T+IS  AE   LSA+       + + L     VN+R+H+ R+ ALT A+ L F  LE+  SF++DP          C  +D ++          +  +V   C         Q AGN+S    + NG          C KK V  T  +  +    +P+  V +GC+    CVF ++ GN  TF       D+   L      I L   KT + +N TGL  +FA RA D  SQ V D + +RR  F GSA   C F + + DAT V    I  +V++W  S+  +       R + +++ + LHWA    R       +NP ++   E+    + ++ + +
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYV-VGCVGTS-CVFVYRSGNEVTFTDFVHSEDVSRVLNES---ITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFS-DATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSSA 351          
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3ISI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 102 bits (254), Expect = 6.690e-21
Identity = 97/350 (27.71%), Postives = 159/350 (45.43%), Query Frame = 0
Query:    1 MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIIS-RTPQDQAQFREADIVESACQVQRKNFNLQRAGNVSLQNGDVRCSKKAVYRTDFIVLSETRKLPESGVHMGCMSD---DFCVFCFQQGNFTFLSEPFL-RDMESGLRSGEIDIELEYLKTELLFNSTGLLVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCISEAKS 345
            M +I LKSQ+ SLI TI+S  AE   LSA+       + + L     VN+R+H+ R+ ALT A+ L F  LE+  SFF+DPA      +  CI +D +  R        R A +V   C     +   Q AGN+S  +G+++C    ++  D I  S    +P+    M C+ D   + C F +  G+    +E  L  D+   L +   +  L   KT + +N+TG+     +R+       V D + +RR  F G+    C F      AT +    +  + V+WT S+  +         V +++ + L WA    R E     +NP ++   E+    V ++ + +
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAA-VVGINCLGTNTSLLWQLAGNIS-DDGEIKCGDDFLFSAD-IHHSPNEPVPDEHT-MECILDGELNLCAFLYSNGSEVTFTEIVLDTDLSFVLDN---NYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNF-DVFSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRSSA 342          
BLAST of Gcaud1893.t1 vs. uniprot
Match: A0A2V3ICZ9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ9_9FLOR)

HSP 1 Score: 70.5 bits (171), Expect = 6.780e-10
Identity = 85/319 (26.65%), Postives = 147/319 (46.08%), Query Frame = 0
Query:    1 MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNIRNHQRRSLALTTASVLLFFILEIIV-SFFTDPATLDRFRSSPCIGIDIISRTPQDQAQFREAD---IVESACQVQRKNFNLQR-AGNVSLQNGDVRCSKKAVYRTDFIVLSETRKLPESGVHMGC--MSDDFCVFC-FQQGNFTFLSEPFLRDMESGLRSGEIDIELEYLKTELLFNSTGL-LVSFAKRAADAFSQNVGDPYEIRRRAFLGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVLFEVDNLLHWA 310
            M +I +KSQ VSL IT+ +  AE  F + +    + R++  L   KS+++R HQR       A +  F I+EIIV +   D   +  F + PC+   I   T Q+     +     + +++C  + K+F LQ    N S+ +  V C+ + VY       S  R++ ++  + G       FC F   + G F+F        ++ G +S     E +++  +L F      ++S          ++  D   I  R  LGS   TC F     +AT VP  ++ VLV  W  S++ +  +A ++R +LF+++  L W+
Sbjct:    1 MVVIGVKSQVVSLFITLATAVAELSFTTGVLLFISSREWSKLENGKSLSVRGHQRVVSQTLAACIAAFIIVEIIVGASIEDELRMTPF-TEPCVQTGI--NTGQEFTSIEQPSRSYLAQTSCS-KFKDFWLQIFLTNFSVTSTVVSCADEPVYELHIRDRSR-RQIGQAKPYCGENEWGVTFCSFTSLETGTFSFTEL-----LDEGEKSMN---ETKFIDVKLFFEPDSQDIISKRLLRVILHGESAMDLDAILSRVLLGSRLSTCTFFKAR-NATRVPVVLMCVLVSIWLCSILLFVCVACSSRKMLFDLNKSLDWS 305          
The following BLAST results are available for this feature:
BLAST of Gcaud1893.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IMC1_9FLOR4.200e-9946.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A0_9FLOR6.260e-4533.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6F3_9FLOR6.150e-4031.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR1.990e-3630.62Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C2_9FLOR1.160e-2929.69Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI7_9FLOR6.690e-2127.71Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICZ9_9FLOR6.780e-1026.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 297..346
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 273..296
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..78
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..272
NoneNo IPR availableTMHMMTMhelixcoord: 10..30
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 270..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_809_length_17679_cov_4.568569contigNODE_809_length_17679_cov_4.568569:9167..10207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1893.t1Gcaud1893.t1Gracilaria caudata M_176_S67 malemRNANODE_809_length_17679_cov_4.568569 9167..10207 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1893.t1 ID=Gcaud1893.t1|Name=Gcaud1893.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MAIIALKSQFVSLIITIISFFAETLFLSALHKAGNLRDFQNLSKTKSVNI
RNHQRRSLALTTASVLLFFILEIIVSFFTDPATLDRFRSSPCIGIDIISR
TPQDQAQFREADIVESACQVQRKNFNLQRAGNVSLQNGDVRCSKKAVYRT
DFIVLSETRKLPESGVHMGCMSDDFCVFCFQQGNFTFLSEPFLRDMESGL
RSGEIDIELEYLKTELLFNSTGLLVSFAKRAADAFSQNVGDPYEIRRRAF
LGSARRTCPFVSETIDATEVPTFVIVVLVVSWTFSVVWYALIAFAARNVL
FEVDNLLHWALYVERREGEVVENNPTLSYFKEDNHPVVCISEAKSK*
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