Gcaud1874.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1874.t1
Unique NameGcaud1874.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length445
Homology
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BLAST of Gcaud1874.t1 vs. uniprot
Match: R7QFH7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFH7_CHOCR)

HSP 1 Score: 120 bits (302), Expect = 7.580e-26
Identity = 101/393 (25.70%), Postives = 176/393 (44.78%), Query Frame = 0 
Query:    2 LASNSPGLVGRTHYEFADASRKIQGHSTQVFLACRCLDYG-----CREAMVLEPRQVK--SEDGKQSEL---VCTYPRVGGKWRDCHTELLRLQ-----------EINVDDVHSIPDSTDFSVELGPNNFWRAIGRRRYIRDISRSELDRLEEVIFEDIL-EDFKKKVNASSTGEFYVFGNDTAGDYQFPDKSA-----VEVGDSEDCAKLFDFAQRSADWMGAQQDQLAIARNEDSFIVPRPEEPSSSDAFLAIGTGLTG-LFASIGIWTHFGPYMRVAGQRKPSKWMTLWEVFKALLAVFVIGVEVATLAFSWVTQNEAEGWSSFFTWFDASVALSPSVRDCESSEQFVCSAARSVYVVAGLMGTATAFHPNRTRWKALLTSMVLIIAASL 366
            +A N  G VG   Y F ++   +QG+STQV +ACRC+  G     C  A+++ P  +     DG++ E    VC Y  VG K+ DCH+EL+RL               ++  + +PD           ++WRA G+R +  D   +E D L E    ++  ED +   + +  G+         G Y  P +       V  G  ++CA+L+DFA  S+  +  QQD++A+ ++  ++I  +    S ++  L++     G LFA    W+ +   M+     +P K+  +      L  V    +E   L  +   +     W S F + DA++ L+      + S      A  S+ V+  +MG     + N +   AL+T++  +IA ++
Sbjct:  105 VAINGFGTVGEVQYTFNNSRENLQGNSTQVMVACRCIGQGKNSAECGVALLVRPITLTRVGADGEREETGRHVCIYEAVGEKFSDCHSELVRLSTRPAGTKPEYWRHPLNFTYEVPDPIS-------GDYWRADGQRGWTHDCEEAEFDALPEYNISNLRREDLRFNNHTTPAGK---------GGYCRPPEGVQYYRDVAEGSDDECAELYDFAAPSSAHIATQQDEIAVGQDPHTYISEKTPLTSYTELALSVSAACLGVLFA----WSMYRKIMKKKNAEQPVKYFLVG----LLKQVMSYALEALPLHIALAHEVGCRHWWSQFAFMDATITLAHGFTGAQGS------ARDSMLVITAVMGEVEYLYTNESL-LALITALFDLIAIAI 466
The following BLAST results are available for this feature:
BLAST of Gcaud1874.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QFH7_CHOCR7.580e-2625.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..224
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 267..289
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 225..246
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 290..352
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 353..374
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 375..444
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 247..266
NoneNo IPR availableTMHMMTMhelixcoord: 353..374
NoneNo IPR availableTMHMMTMhelixcoord: 267..289
NoneNo IPR availableTMHMMTMhelixcoord: 225..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_823_length_17514_cov_4.507834contigNODE_823_length_17514_cov_4.507834:9386..10720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1874.t1Gcaud1874.t1Gracilaria caudata M_176_S67 malemRNANODE_823_length_17514_cov_4.507834 9386..10720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1874.t1 ID=Gcaud1874.t1|Name=Gcaud1874.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MLASNSPGLVGRTHYEFADASRKIQGHSTQVFLACRCLDYGCREAMVLEP
RQVKSEDGKQSELVCTYPRVGGKWRDCHTELLRLQEINVDDVHSIPDSTD
FSVELGPNNFWRAIGRRRYIRDISRSELDRLEEVIFEDILEDFKKKVNAS
STGEFYVFGNDTAGDYQFPDKSAVEVGDSEDCAKLFDFAQRSADWMGAQQ
DQLAIARNEDSFIVPRPEEPSSSDAFLAIGTGLTGLFASIGIWTHFGPYM
RVAGQRKPSKWMTLWEVFKALLAVFVIGVEVATLAFSWVTQNEAEGWSSF
FTWFDASVALSPSVRDCESSEQFVCSAARSVYVVAGLMGTATAFHPNRTR
WKALLTSMVLIIAASLVFVCSFFVKSYRSWTQNGLYGSYWWTGEAYPTTL
LVKLNKRDRRRIHKSHGLLRVRLDTVLTNHSTVPRSWSDSGRSR*
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