Gcaud1855.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1855.t1
Unique NameGcaud1855.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length94
Homology
BLAST of Gcaud1855.t1 vs. uniprot
Match: R7QD51_CHOCR (Ribonucloprotein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QD51_CHOCR)

HSP 1 Score: 162 bits (411), Expect = 5.230e-50
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86
            M  QE NPKAVPMADAEL+VKILDLVQQ+ANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK
Sbjct:    1 MAAQEPNPKAVPMADAELTVKILDLVQQAANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86          
BLAST of Gcaud1855.t1 vs. uniprot
Match: A0A7S2FW40_9STRA (Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2FW40_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.750e-43
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 0
Query:    5 EANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86
            E NPKA P+ADAE++VKILDLVQQ+ NYKQ+KKGANEATKTLNRG SEF+V+A DAEPLEILLHLPLLCEDKNVPYVFVPSK
Sbjct:    3 EVNPKAYPLADAEMTVKILDLVQQACNYKQLKKGANEATKTLNRGISEFVVLAADAEPLEILLHLPLLCEDKNVPYVFVPSK 84          
BLAST of Gcaud1855.t1 vs. uniprot
Match: A0A0L0FMD7_9EUKA (Ribonucloprotein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FMD7_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 2.480e-43
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0
Query:    5 EANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            E NPKA P+ADAEL+V ILDLVQQ+ANYKQ+KKGANEATKTLNRG SEFIVMA D EP+EILLHLPLLCEDKNVPYVFVPSK 
Sbjct:    3 EVNPKAYPLADAELTVTILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKQ 85          
BLAST of Gcaud1855.t1 vs. uniprot
Match: A0A022QHN0_ERYGU (Ribonucloprotein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QHN0_ERYGU)

HSP 1 Score: 143 bits (361), Expect = 2.160e-42
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            MT    NPKA P+ADA+L++ ILDLVQQ ANYKQ+KKGANEATKTLNRG SEF+VMA DAEPLEILLHLPLL EDKNVPYVFVPSK 
Sbjct:    1 MTADAVNPKAYPLADAQLTITILDLVQQGANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQ 87          
BLAST of Gcaud1855.t1 vs. uniprot
Match: R7U1Q6_CAPTE (Ribonucloprotein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U1Q6_CAPTE)

HSP 1 Score: 143 bits (361), Expect = 2.160e-42
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            M   E NPKA P+AD +L+VKILDLVQQ+ANYKQ++KGANEATKTLNRG SEFIVMA DAEPLEILLHLPLLCEDKNVPYVFV SK 
Sbjct:    1 MADGEVNPKAYPLADPQLTVKILDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKQ 87          
BLAST of Gcaud1855.t1 vs. uniprot
Match: I3NMQ2_HEVBR (Ribonucloprotein n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=I3NMQ2_HEVBR)

HSP 1 Score: 143 bits (360), Expect = 3.070e-42
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            MT +  NPKA P+ADA+L++ ILDLVQQ+ANYKQ+KKGANEATKTLNRG SEFIVMA D EPLEILLHLPLL EDKNVPYVFVPSK 
Sbjct:    1 MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQ 87          
BLAST of Gcaud1855.t1 vs. uniprot
Match: K7M084_SOYBN (Ribonucloprotein n=4 Tax=Phaseoleae TaxID=163735 RepID=K7M084_SOYBN)

HSP 1 Score: 144 bits (362), Expect = 3.270e-42
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            MT +  NPKA P+ADA+LS+ ILDLVQQ+ANYKQ+KKGANEATKTLNRG SEF+VMA D EPLEILLHLPLL EDKNVPYVFVPSK 
Sbjct:   26 MTGETVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQ 112          
BLAST of Gcaud1855.t1 vs. uniprot
Match: A0A5B6ZQ35_DAVIN (Ribonucloprotein n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZQ35_DAVIN)

HSP 1 Score: 142 bits (359), Expect = 4.360e-42
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            MT +  NPKA P+ADA+L++ ILDL+QQ+ANYKQ+KKGANEATKTLNRG SEF+VMA D EPLEILLHLPLL EDKNVPYVFVPSK 
Sbjct:    1 MTAEAVNPKAYPLADAQLTITILDLIQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQ 87          
BLAST of Gcaud1855.t1 vs. uniprot
Match: Q676X4_HYAOR (Ribonucloprotein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q676X4_HYAOR)

HSP 1 Score: 142 bits (359), Expect = 4.500e-42
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    2 TKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            T+   NPKA P+ADA+L++ ILDLVQQ+ANYKQ+KKGANEATKTLNRG SEF+VMA DAEPLEILLHLPLL EDKNVPYVFVPSK 
Sbjct:    3 TEMAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQ 88          
BLAST of Gcaud1855.t1 vs. uniprot
Match: UPI0003F0AC69 (NHP2-like protein 1 n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0AC69)

HSP 1 Score: 142 bits (358), Expect = 4.560e-42
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 0
Query:    1 MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKD 87
            MT+ + NPKA P+ADA L+ K+LDLVQQS NYKQ++KGANEATKTLNRG SEFIVMA DAEPLEI+LHLPLLCEDKNVPYVFV SK 
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQ 87          
The following BLAST results are available for this feature:
BLAST of Gcaud1855.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QD51_CHOCR5.230e-5094.19Ribonucloprotein n=2 Tax=Rhodymeniophycidae TaxID=... [more]
A0A7S2FW40_9STRA1.750e-4385.37Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 ... [more]
A0A0L0FMD7_9EUKA2.480e-4385.54Ribonucloprotein n=1 Tax=Sphaeroforma arctica JP61... [more]
A0A022QHN0_ERYGU2.160e-4280.46Ribonucloprotein n=6 Tax=Mesangiospermae TaxID=143... [more]
R7U1Q6_CAPTE2.160e-4281.61Ribonucloprotein n=1 Tax=Capitella teleta TaxID=28... [more]
I3NMQ2_HEVBR3.070e-4280.46Ribonucloprotein n=4 Tax=Hevea brasiliensis TaxID=... [more]
K7M084_SOYBN3.270e-4280.46Ribonucloprotein n=4 Tax=Phaseoleae TaxID=163735 R... [more]
A0A5B6ZQ35_DAVIN4.360e-4278.16Ribonucloprotein n=2 Tax=Davidia involucrata TaxID... [more]
Q676X4_HYAOR4.500e-4280.23Ribonucloprotein n=2 Tax=Mesangiospermae TaxID=143... [more]
UPI0003F0AC694.560e-4279.31NHP2-like protein 1 n=1 Tax=Elephantulus edwardii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 70..80
score: 66.53
coord: 35..49
score: 45.15
coord: 54..67
score: 43.51
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 38..48
score: 87.27
coord: 21..36
score: 60.0
coord: 8..21
score: 55.71
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 22..86
e-value: 4.4E-18
score: 64.8
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 1..88
e-value: 3.2E-37
score: 129.0
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 6..86
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 4..87
NoneNo IPR availablePANTHERPTHR23105:SF158NHP2-LIKE PROTEIN 1coord: 4..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1223_length_12420_cov_4.813286contigNODE_1223_length_12420_cov_4.813286:2553..2995 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1Gcaud1855.t1Gracilaria caudata M_176_S67 malemRNANODE_1223_length_12420_cov_4.813286 2553..2995 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1855.t1 ID=Gcaud1855.t1|Name=Gcaud1855.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=94bp
MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQ
SEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKDPPFPLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like