Gcaud1849.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1849.t1
Unique NameGcaud1849.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length138
Homology
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BLAST of Gcaud1849.t1 vs. uniprot
Match: A0A2V3IR29_9FLOR (CHHC U11-48K-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR29_9FLOR)

HSP 1 Score: 163 bits (413), Expect = 2.000e-49
Identity = 83/137 (60.58%), Postives = 95/137 (69.34%), Query Frame = 0 
Query:    1 MGGGRRKFRHCRLGSSFDDAEHLHGLAHGVTSYKGNAFTVRNRNFAEQQLELCVARTQLMKRVIEETGQDHIPSGEETDSNKFFVNDPLLPRCRHNPLHAVPLRNLRKHELSCPSNPEKRRRTKEHEYHYSYMTPAA 137
            MGGGRRKFRHCRLGS+ DDAE+L G   GV   K        RN A+QQLELCVARTQ++KRV EET      SGEE   N   + DPLLPRCR+NP H V LRNL+KHE  CPSNP++RRR KE     ++MTPAA
Sbjct:    1 MGGGRRKFRHCRLGSTLDDAEYLLGFTQGVVPTKEYTLKSLKRNIADQQLELCVARTQVVKRVFEETVDGDFLSGEELSRNDVVMADPLLPRCRYNPSHTVSLRNLKKHESFCPSNPDRRRRCKEESEDPTFMTPAA 137
The following BLAST results are available for this feature:
BLAST of Gcaud1849.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IR29_9FLOR2.000e-4960.58CHHC U11-48K-type domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:26102..26594 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1Gcaud1849.t1Gracilaria caudata M_176_S67 malemRNANODE_207_length_37223_cov_4.468356 26102..26594 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1849.t1 ID=Gcaud1849.t1|Name=Gcaud1849.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=138bp
MGGGRRKFRHCRLGSSFDDAEHLHGLAHGVTSYKGNAFTVRNRNFAEQQL
ELCVARTQLMKRVIEETGQDHIPSGEETDSNKFFVNDPLLPRCRHNPLHA
VPLRNLRKHELSCPSNPEKRRRTKEHEYHYSYMTPAA*
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