Gcaud1845.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1845.t1
Unique NameGcaud1845.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length266
Homology
BLAST of Gcaud1845.t1 vs. uniprot
Match: A0A2V3ITW0_9FLOR (Protein HVA22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITW0_9FLOR)

HSP 1 Score: 291 bits (746), Expect = 1.270e-92
Identity = 141/236 (59.75%), Postives = 183/236 (77.54%), Query Frame = 0
Query:   30 ELATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIRRQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNWLSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDRVMACLGATMSSVQRQVITPRKKKRA 265
            EL  LR WVVF +AW  RSL  YFCP + E F+  FD  L YF +W EL++TKGAE +YS+I+ T R+R+R+     ++KLN+ LRLLVA G+L +D  +D+    AESGL LLG +FLITPRM+TF+GTVA+G ++P YL+  VIE+ D K LYR+NWLSYWS+L LIE AYT+ +  LGWLPLWYHVK+ VV+WLQLPYFRGA+ +LDR+M  +G+T+SSV+RQV+TPRK+KRA
Sbjct:  291 ELKALRSWVVFGIAWGCRSLSWYFCPQLLEHFVTSFDILLFYFFVWAELELTKGAEVLYSIIARTSRSRLRKPRGEGVQKLNIFLRLLVAAGILKDDQTSDLFGFAAESGLTLLGTIFLITPRMLTFVGTVAIGLMMPAYLTIAVIEAGDPKGLYRYNWLSYWSVLSLIEAAYTAASNRLGWLPLWYHVKMCVVMWLQLPYFRGASTLLDRMMGQVGSTLSSVKRQVVTPRKRKRA 526          
BLAST of Gcaud1845.t1 vs. uniprot
Match: R7QLA4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLA4_CHOCR)

HSP 1 Score: 112 bits (281), Expect = 1.100e-25
Identity = 61/127 (48.03%), Postives = 81/127 (63.78%), Query Frame = 0
Query:   26 HEALELATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIRRQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPR 152
            ++A E A L+FWV F L W ARS++ YF P M +G +   D  LLY L+W +L ITKGAE VY L++   R R RR  R+R +  N+ LR+ VA  +L  +    ++ +IAESGLAL G  FLITPR
Sbjct:  155 YQASEPAALKFWVTFGLVWTARSIMWYFVPSMLKGAIESLDITLLYVLIWAQLGITKGAEIVYGLVAGVARRRWRRGGRDRTQTANMFLRMAVAANLLRSERLIYMTGMIAESGLALTGVFFLITPR 281          
BLAST of Gcaud1845.t1 vs. uniprot
Match: F0WN15_9STRA (Transmembrane protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WN15_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.410e-25
Identity = 70/218 (32.11%), Postives = 115/218 (52.75%), Query Frame = 0
Query:   34 LRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIRRQ-------DRNRLEK----LNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNWLSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDR 240
            LRFW+V++L +  +S+   F P     ++   + +  + LLW ++ + +G+  +Y LIS   + R   Q       D   L+      N+V+R L+A  +++E H + +  + ++ G AL G +FL TP  +T  G   +GF  P +     +  R     Y   WL Y+ +L  +E  Y +  QA  W+PL++HVKL  +LWLQ PYF+GA  +LDR
Sbjct:  294 LRFWIVWSLGFCVKSITSLFIPSFIVAYIKPSNYWSNFILLWLQIPVMRGSSMLYYLISRFYQPRTTTQWIDFGQVDATNLQPESTDRNLVIRTLMALSIISERHISILQDVWSQ-GPALCGLIFLFTPGFITSRGCYIIGFGFPAHSVIVTLHRRCQTKRYEW-WLCYYIVLAGVEYTYYAVEQAFSWVPLFFHVKLLTLLWLQFPYFQGAQRLLDR 509          
BLAST of Gcaud1845.t1 vs. uniprot
Match: A0A024G773_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G773_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.280e-24
Identity = 73/232 (31.47%), Postives = 116/232 (50.00%), Query Frame = 0
Query:   34 LRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISE------TMR------TRIRRQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNW-LSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDRVMACLGATMSSV 252
            LRFW+V++  +   S+  +F P     ++     +   FLLW +L I +G+  +Y +IS       T R        +         + N++LR  +A  +++E H A +  + ++ G AL G +FL TP  +T  G   +GF  P +    ++    S  L R+ W L Y+ +L  +E  Y    QA  W+PL+YH KL ++LWLQ PYF+GA  +LDR  A +  T   V
Sbjct:  295 LRFWIVWSCGFCLMSISSFFIPSFVTAYIKPSKYWSNLFLLWLQLPILRGSSMLYYVISRFYQPCTTTRWGHFGQANMTNAQSETTARSNLILRTFMALSIISERHIAVLQDVWSQ-GPALCGLIFLFTPGFITSRGCYIIGFGFPAH--SVILTLHRSNQLKRYEWWLCYYIVLASVEYTYYGVEQAFSWVPLFYHAKLLILLWLQFPYFQGAQRLLDRFYANVFVTKVGV 523          
BLAST of Gcaud1845.t1 vs. uniprot
Match: A0A1W0ACU8_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACU8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.930e-23
Identity = 77/228 (33.77%), Postives = 116/228 (50.88%), Query Frame = 0
Query:   17 LDMPENEKEHEALELATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRT---RIRRQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNWLSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDRV 241
            L MP    + E LE   L+ WV +AL   + SL+  F P      L         FL+W  L IT+G   +Y ++S  M     RI    RN +E  NVVLR + A G ++E  A  +  + A+ G AL G +FL TP  +T  G   V    P ++    +     ++     W+ Y++++ ++E  ++S    L W+PL+YH+KL V+L+LQ PYFRGA  + D V
Sbjct:  265 LTMPLTPTDDEYLE-HCLKVWVPWALYITSVSLVTLFLPNFISSTLTVSGLTTNIFLIWFHLPITRGYRVIYQILSSWMHPYADRIPAAARNEVESANVVLRAMTAIGAISERSAHILRDLRAQ-GPALAGLIFLGTPGFLTMRGCDCVALAFPAFVVMSTMTLGHRRT--HEWWVCYFTVVSIVESIFSSLEVVLWWVPLFYHLKLFVMLYLQFPYFRGAQTIFDGV 488          
BLAST of Gcaud1845.t1 vs. uniprot
Match: G5ACU2_PHYSP (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=G5ACU2_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 5.900e-23
Identity = 67/211 (31.75%), Postives = 116/211 (54.98%), Query Frame = 0
Query:   32 ATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMR---TRIRRQDR----NRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNW-LSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGA 234
            A L++WV++++A  +  ++  F P     F     +F   FL+W     T+G   +Y+++S  +     RI  ++     +  EK N ++RLLV+  V+ E H   ++  +   G AL G +F+ TP  V   G   +GF  P Y++ GV+  + ++   R+ W L+Y+S+   ++   T+  + +GWLPL+YH KL V++WLQ PYF+GA
Sbjct:  325 ACLKYWVIWSVAACSIGMVTLFLPAFVTSFFTVPLHFCNIFLIWMHSPFTRGDIALYTMLSPLISPYANRIHEREAEVNADAEEKTNFLIRLLVSFRVVPERHV-HLAKDLWSQGPALFGLIFMFTPGFVASRGCSLMGFGFPAYVTIGVLGEKRTR---RYEWWLAYFSVAVTVDYLITAIGREIGWLPLFYHAKLLVMMWLQFPYFQGA 531          
BLAST of Gcaud1845.t1 vs. uniprot
Match: H3H2Q5_PHYRM (PH domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2Q5_PHYRM)

HSP 1 Score: 105 bits (261), Expect = 8.640e-22
Identity = 68/210 (32.38%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   32 ATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIRR-QDRNRL-----EKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNW-LSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGA 234
            A L++WV+++L      ++  F P     F     +F   FL+W     T+G   +Y+L+S  +     R  +R  +     EK NV++RLLV+  V+ E H   ++  +   G AL G +F+ TP  V   G   +GF  P Y++ GV+  + ++   R+ W L+Y+S+    +    +  + + WLPL+YHVKL V++WLQ PYF+GA
Sbjct:  292 ACLKYWVIWSLTACLIGMVTLFLPAFVTSFFTVPLHFCNIFLVWMHSPFTRGDIALYTLLSPLISPYANRLHEREPINTEGEEKANVLMRLLVSLRVVPEKHV-HLAKDLWSQGPALFGLLFMFTPGFVASRGCSLMGFGFPAYVTIGVLGEKRTR---RYEWWLAYFSVAVTADYLIAAIGREIAWLPLFYHVKLLVMMWLQFPYFQGA 497          
BLAST of Gcaud1845.t1 vs. uniprot
Match: A0A0W8DI37_PHYNI (Pectin lyase F n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DI37_PHYNI)

HSP 1 Score: 104 bits (259), Expect = 8.640e-22
Identity = 65/211 (30.81%), Postives = 110/211 (52.13%), Query Frame = 0
Query:   32 ATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIRRQDRNRL-------EKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNW-LSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGA 234
            A L++WV+++LA     ++  F P     F     +F   FL+W     T+G   +Y+ +S  +     R             EK N ++R+LV+  V+ E H      + ++ G AL G +F+ TP  V   G   +GF  P Y++ GV+  + ++   R+ W ++Y+S+   ++   T+  + +GWLPL+YH KL V++WLQ PYF+GA
Sbjct:  296 ACLKYWVLWSLAVCVIGMVTLFLPAFVTSFFTVPLHFCNIFLIWMHSPFTRGDIALYTWLSPLVSPYANRIHEREATVNPEAEEKTNFLIRILVSLRVVPERHVYLAKDLWSQ-GPALFGLIFMFTPGFVASRGCSLMGFGFPAYVTIGVLGEKRTR---RYEWWIAYFSVAVTVDYLITAIGREIGWLPLFYHAKLLVMMWLQFPYFQGA 502          
BLAST of Gcaud1845.t1 vs. uniprot
Match: A0A5D6Y5A0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5A0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.650e-21
Identity = 72/217 (33.18%), Postives = 113/217 (52.07%), Query Frame = 0
Query:   34 LRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFL-LYFLLWTELDITKGAETVYSLISETMRTRIRR---------QDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNW-LSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLD 239
            L++WV+++LA  A S++  F P  F   LV    +    FL W    +T+G   +Y+L+S  +     R         +     E  + V+R LVA  VL E   A +  + ++ G AL G +F+ TP  VT  G + VGF  P Y++ G +  + ++   R+ W LSY+ +   ++   T+    L WLPL+YH KL +++WLQ PYFRGA  + D
Sbjct:  296 LKYWVLWSLASCAGSVVSLFLP-RFVLALVTAPTYAGSVFLAWVHSPVTRGDIALYTLLSPVLNPYANRLRDVGAGAARATGDTEATSFVMRALVALRVLPEQRVALLQDLWSQ-GPALAGLLFVFTPGFVTARGCMLVGFGFPAYVTMGALAEKTAR---RYEWWLSYFCVAVALDSVLTAAVSELAWLPLFYHAKLLLLMWLQFPYFRGAQKIFD 507          
BLAST of Gcaud1845.t1 vs. uniprot
Match: A0A225W419_9STRA (Transmembrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W419_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.150e-21
Identity = 66/211 (31.28%), Postives = 113/211 (53.55%), Query Frame = 0
Query:   32 ATLRFWVVFALAWAARSLLRYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMR---TRIRRQDRN----RLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLITPRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNW-LSYWSILYLIEIAYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGA 234
            A L++WV+++ A     ++  F P     F+    +F   FL+W     T+G   +Y+ +S  +     RI  ++ +      EK   ++R+LV+  VL E H   ++  +   G AL G +F+ TP  V   G   +GF  P Y++ GV+  + ++   R+ W L+Y+S+   ++   T+  + + WLPL+YHVKL V++WLQ PYF+GA
Sbjct:  300 ACLKYWVIWSFAACLIGMVTLFLPAFVTSFVTVPLHFCNIFLIWMHSPFTRGDIALYTWLSPLISPYANRIHEREASVNAEAEEKTTFLMRMLVSFRVLPERHV-HLAKDLWSQGPALFGLIFVFTPGFVASRGCSLMGFGFPAYVTIGVLGEKRTR---RYEWWLAYFSVAVTVDYLLTAIGREIAWLPLFYHVKLLVMMWLQFPYFQGA 506          
The following BLAST results are available for this feature:
BLAST of Gcaud1845.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITW0_9FLOR1.270e-9259.75Protein HVA22 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
R7QLA4_CHOCR1.100e-2548.03Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
F0WN15_9STRA3.410e-2532.11Transmembrane protein putative n=1 Tax=Albugo laib... [more]
A0A024G773_9STRA4.280e-2431.47Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1W0ACU8_9STRA1.930e-2333.77Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
G5ACU2_PHYSP5.900e-2331.75Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
H3H2Q5_PHYRM8.640e-2232.38PH domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A0W8DI37_PHYNI8.640e-2230.81Pectin lyase F n=14 Tax=Phytophthora TaxID=4783 Re... [more]
A0A5D6Y5A0_9STRA1.650e-2133.18Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A225W419_9STRA4.150e-2131.28Transmembrane protein n=1 Tax=Phytophthora megakar... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004345TB2/DP1/HVA22-related proteinPFAMPF03134TB2_DP1_HVA22coord: 167..242
e-value: 3.1E-15
score: 55.9
IPR004345TB2/DP1/HVA22-related proteinPANTHERPTHR12300HVA22-LIKE PROTEINScoord: 156..244
NoneNo IPR availablePANTHERPTHR12300:SF22LP05237P-RELATEDcoord: 156..244
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 211..229
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 253..265
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..210
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..139
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 230..252
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 171..190
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 140..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 230..252
NoneNo IPR availableTMHMMTMhelixcoord: 188..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:20746..21543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1845.t1Gcaud1845.t1Gracilaria caudata M_176_S67 malemRNANODE_207_length_37223_cov_4.468356 20746..21543 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1845.t1 ID=Gcaud1845.t1|Name=Gcaud1845.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MSKSSDSLYPSSMSALLDMPENEKEHEALELATLRFWVVFALAWAARSLL
RYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIR
RQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLIT
PRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNWLSYWSILYLIEI
AYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDRVMACLGATMS
SVQRQVITPRKKKRA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22