Gcaud1838.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1838.t1
Unique NameGcaud1838.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length378
Homology
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BLAST of Gcaud1838.t1 vs. uniprot
Match: A0A2V3ILX4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILX4_9FLOR)

HSP 1 Score: 179 bits (453), Expect = 2.400e-50
Identity = 98/235 (41.70%), Postives = 146/235 (62.13%), Query Frame = 0 
Query:  143 SDGDIAAFVGYLANEGKVGPASIPQYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRKQAANPSDRPARVGCDATTMRRVVEFGCECEDMQLVGACCATLFSFIFHLRSVSSNNLMRSNLSITATTMELRINRRKGKQGQRPFSLRYWRHKNWHPAKNPFALVRRWLRLTRNPHLFGISATSKPSLEESLSLALSATGIQAPSGGVYTSHSPRIGSFNELLQLGFTRELIMHRFD 377
            ++GD+ A++G+L+NEG+V   S+PQY+SA+SR+H  H  P PTK+ +VR V+ AY R+   + S R  RVGC A+ M +VV  G    D   + AC AT+ +F+F LR+VS NNL R ++ I+   +   I RRKGK  +RP  LRY   + W P +NPFAL+++W+    +P      A    SL ++L  +++       +G  +TSH+PRIG +NELL LG ++E IM R +
Sbjct:    7 TEGDVLAYIGFLSNEGQVSHNSLPQYISAVSRYHELHFLPLPTKTPMVRAVMKAYARRMETDGSVRAIRVGCPASLMAKVVAAGLTSNDQIDLDACAATVLAFVFQLRAVSVNNLHRRDVVISDGLIVASIFRRKGKSIRRPSMLRYASAETWEP-ENPFALIKKWVCSHTDP-----KAVMNLSLSDALDRSMALVNGVPSTGCRFTSHTPRIGGYNELLGLGLSKEWIMRRLN 235
[Close]
BLAST of Gcaud1838.t1 vs. uniprot
Match: A0A2V3IMP3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMP3_9FLOR)

HSP 1 Score: 129 bits (325), Expect = 5.510e-32
Identity = 67/212 (31.60%), Postives = 117/212 (55.19%), Query Frame = 0 
Query:   98 TGGGQSAADMVAEFGYSESTWLHRSVQLRKWFSFRELNRQPKFTTSDGDIAAFVGYLANEGKVGPASIPQYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRKQAANPSDRPARVGCDATTMRRVVEFGCECEDMQLVGACCATLFSFIFHLRSVSSNNLMRSNLSITATT-MELRINRRKGKQGQRPFSLRYWRHKNWHPAKNPFALVRRW 308
            TG  + AA+++AE+G+++  W +R  QL KW  F +   +P     +G+  A+VGYL+ EG+V P S   Y++ +SR+H    + SPTK++LV  ++ AY +      S++ AR G DA  +RR+V    + +D ++V +C   LF+F+F  RS +  ++  ++L ++ T  +  ++  +K K+   P  L Y     W        L+ RW
Sbjct:   15 TGAKERAAELLAEYGWTDEKWKNRVSQLHKWLFFFDEEGRPALPAGEGEFMAYVGYLSLEGRVWPTSARHYVTTVSRYHEDAGYDSPTKTRLVLRLLKAYEKMVDRFASEKLARAGLDAGVIRRIVALVLDSDDREVVCSCAMLLFAFVFQCRSATVIHVTLTDLKVSDTLGIRAKLVYQKAKRASLPLLLIYPLSSEWEDGTGRHLLLARW 226
The following BLAST results are available for this feature:
BLAST of Gcaud1838.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ILX4_9FLOR2.400e-5041.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMP3_9FLOR5.510e-3231.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010998Integrase/recombinase, N-terminalGENE3D1.10.150.130coord: 104..205
e-value: 1.4E-14
score: 55.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableSUPERFAMILY47823lambda integrase-like, N-terminal domaincoord: 108..204
IPR044068Core-binding (CB) domainPROSITEPS51900CBcoord: 102..180
score: 8.807255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:74439..75572 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1838.t1Gcaud1838.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 74439..75572 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1838.t1 ID=Gcaud1838.t1|Name=Gcaud1838.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=378bp
MDPAVRFHPVGAPEDRDRQRQGGARSAVLAEPAMVPDGAANQHIDYGHSP
ARHGVSAARQSSVITALGRRDRSNPVLEEYKRTVHATVLEKSTLHDRTGG
GQSAADMVAEFGYSESTWLHRSVQLRKWFSFRELNRQPKFTTSDGDIAAF
VGYLANEGKVGPASIPQYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRK
QAANPSDRPARVGCDATTMRRVVEFGCECEDMQLVGACCATLFSFIFHLR
SVSSNNLMRSNLSITATTMELRINRRKGKQGQRPFSLRYWRHKNWHPAKN
PFALVRRWLRLTRNPHLFGISATSKPSLEESLSLALSATGIQAPSGGVYT
SHSPRIGSFNELLQLGFTRELIMHRFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010998Integrase_recombinase_N
IPR044068CB