Gcaud1830.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1830.t1
Unique NameGcaud1830.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length237
Homology
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BLAST of Gcaud1830.t1 vs. uniprot
Match: A0A2V3ISD1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISD1_9FLOR)

HSP 1 Score: 217 bits (552), Expect = 6.120e-69
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0 
Query:  104 MNRLRALMVPDHDSKMALLHLNPLLFVLGDSLLKDADLLTKYAIKQRRAVLFVNVYGMGYFFWTLFCTRFNGGHWPYPFQHRFSPVQHLMFVAFSLTCATYLTRTGFRLHARLDRRRRRRYLLAEKDRSMR 234
            MNRLRA MVPDHDSKMALLHLNPLLF LGDSLLKDADLL KYAIKQ RAVL V+ YG+ YFFWTLFCTRFNGGHWPYPFQ  FSPVQHLMF+A S++CA YLTR GFR H RLDRRRRRR  LAEK+RS R
Sbjct:    1 MNRLRAHMVPDHDSKMALLHLNPLLFALGDSLLKDADLLAKYAIKQSRAVLLVSAYGVMYFFWTLFCTRFNGGHWPYPFQMAFSPVQHLMFMALSVSCAIYLTRAGFRFHGRLDRRRRRRLALAEKERSAR 131
The following BLAST results are available for this feature:
BLAST of Gcaud1830.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISD1_9FLOR6.120e-6982.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006838FAR-17a/AIG1-like proteinPFAMPF04750Far-17a_AIG1coord: 26..213
e-value: 3.1E-13
score: 49.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..169
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..99
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 137..151
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 211..236
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 170..188
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..210
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..136
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 100..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 60..79
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 190..212
NoneNo IPR availableTMHMMTMhelixcoord: 119..136
NoneNo IPR availableTMHMMTMhelixcoord: 80..99
NoneNo IPR availableTMHMMTMhelixcoord: 37..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:54817..55527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1830.t1Gcaud1830.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 54817..55527 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1830.t1 ID=Gcaud1830.t1|Name=Gcaud1830.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=237bp
LAAPNFLYAQYVQLIALKAEGRTPLPAAVAFGRDSVFLTFHGNFHCTWYA
CLCLMNAVLQMGRRARSRPARAVERIVHRFTTVLFPLAAFVGLAYYLILH
FHPMNRLRALMVPDHDSKMALLHLNPLLFVLGDSLLKDADLLTKYAIKQR
RAVLFVNVYGMGYFFWTLFCTRFNGGHWPYPFQHRFSPVQHLMFVAFSLT
CATYLTRTGFRLHARLDRRRRRRYLLAEKDRSMRRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006838Far-17a_AIG1