Gcaud1824.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1824.t1
Unique NameGcaud1824.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length542
Homology
BLAST of Gcaud1824.t1 vs. uniprot
Match: A0A2V3IJR0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJR0_9FLOR)

HSP 1 Score: 668 bits (1723), Expect = 3.880e-235
Identity = 356/538 (66.17%), Postives = 418/538 (77.70%), Query Frame = 0
Query:    3 PVGKLQFLRSSGKADQQKGLLLVRQLPSRIALELLQLSVETSDNEFIRSTAAISIGQLSFEDDNIAMEAVRLMAALLATDEDYSVRAAAGAAMGYATNISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVPVLHKWLSSDNDLLVQAAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPSVIDALRTLSKDQSFAVREAAEEALKVFGCGNPVKEDIRTDEELIEAEISNLIQGDESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPKPEASSDMHAFRQLVDDLKAGSPLAQVMAAIQLRKFDGKLASEAALSSNSFDPKVSTERLRAVCVGLLAKGGELEQVIRILKTDPDQNVRSACCDALLDLGGGLPAVEACIDTFQNDSHWLVRVSAAIALGTIGKENRQVEEILIQSLYPGGVKDMNPPQDFVIHRHVVTALGFLGSRKALTRFEELTRSHDTDDSVRYRIAAALRGIHCEESAGLLRLLIEDENESVAEMAQGSLDALSQLGF 540
            P      L S GKA+QQKGLLLVRQLP ++AL+LL+LSVETSDNEFIRSTAAISIGQL FED+ +A EAVR+M+ LLATD DYSVRAAA AA+GYAT +    KS LFDAL RAL+ED+EWQV FSCLASLGS  D+RA+PVL KWL + NDLLVQA++G                                         EPSVIDALRTLSKDQSFAVR+AA E+L+ FGC +PVK + R+DEELIEAE+SNL++GDE+GSAVESASDALRRRLERSFDKEY+   A     +     DM A+ +LVD+LKAG+PL+QVMAAIQLRK+DGKLA+EA +SSN+ DP+ S+ERLRA+ VGLLA+GG++E+VI +LKTDPDQNVRSACCDALLDLGGG  A+  CI+TF+NDSHWLVR+SAAI LGTIGK N +VE++LIQSL   GVK +N PQD V+HRHVVTALGFLGS+KAL  FEEL  + DT  +VRYRIAAALRGIHCEES    RLLI+DE+ESVAEMAQGSLDAL+Q  F
Sbjct:   42 PADVRALLTSKGKAEQQKGLLLVRQLPPQVALDLLKLSVETSDNEFIRSTAAISIGQLPFEDEALATEAVRVMSDLLATDNDYSVRAAAAAAVGYATELPEFGKSALFDALMRALLEDSEWQVHFSCLASLGSLRDERAIPVLRKWLDAKNDLLVQASIGALGDLGAISAVADLLQLLGSKDMMTRQRLAQALGQMSDAKKEPSVIDALRTLSKDQSFAVRDAALESLERFGCASPVKTETRSDEELIEAEVSNLMKGDEAGSAVESASDALRRRLERSFDKEYVQTDAHIGSVREAGLRDMDAYSKLVDELKAGNPLSQVMAAIQLRKYDGKLAAEAVVSSNALDPQTSSERLRAISVGLLARGGDMERVIDVLKTDPDQNVRSACCDALLDLGGGPSAIATCIETFENDSHWLVRISAAITLGTIGKGNEEVEDVLIQSLKANGVKGLNAPQDTVLHRHVVTALGFLGSKKALKSFEELLSNEDTGGAVRYRIAAALRGIHCEESIVFARLLIDDEDESVAEMAQGSLDALAQHDF 579          
BLAST of Gcaud1824.t1 vs. uniprot
Match: R7QP05_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP05_CHOCR)

HSP 1 Score: 429 bits (1102), Expect = 4.710e-140
Identity = 256/554 (46.21%), Postives = 318/554 (57.40%), Query Frame = 0
Query:   10 LRSSGKADQQKGLLLVRQLPSRIALELLQLSVETSDNEFIRSTAAISIGQLSFEDDNIAMEAVRLMAALLATDEDYSVRAAAGAAMGYATNISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVPVLHKWLSSDNDLLVQAAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPSVIDALRTLSKDQSFAVREAAEEALKVFGCGNPVKEDIRTDEELIEAEISNLIQGDESGSAVESASDALRRRLERSFDKEYIH-PSAFKNVPK--------------------PEASSDMHA-FRQLVDDLKAGSPLAQVMAAIQLRKFDGKLASEAALSSNSFDPKVSTERLRAVCVGLLAKGGELEQVIRILKTDPDQNVRSACCDALLDLGGGLPAVEACIDTFQNDSHWLVRVSAAIALGTIGKENRQVEEILIQSLYPGGVKDMNPPQDFVIHRHVVTALGFLGSRKALTRFEELTRSHDTDDSVRYRIAAALRGIHCEESAGLLRLLIEDENESVAEMAQGSLDALSQLGFS 541
            + S GKADQQ+GLLLVR+LP  +ALELL LS++TS NEFIRSTAAI+IGQL F D   A  AV                                                                 D+RAVP+L +W+ SDNDLLVQA++G                                         EPSVIDALR LSKDQSFAVR+AA+EAL  FGC    K D  +D+E ++ E++NL++GDE  +   SAS+A+RRRLERSFDKEY+  P AF +V K                    PE +    A F  L++DLK G  L Q MA I+LRKFDGK  S+A L +   D    +ER+R++CV LLA+GGEL +VI +L  DPDQNVRSACCDA+ ++GGG   VEAC+  F+ D HWLVRVSAAIALG+IGK     E+ L+ SL PGGV+ +  PQD V+ RH VTALGFLGS K L     L    D+D ++RYRIA ALRGIHC+ESA L+R L+ D +  V+ MAQG+LDAL+Q GFS
Sbjct:  114 ITSEGKADQQRGLLLVRKLPPAVALELLLLSIQTSTNEFIRSTAAITIGQLQFPDPATASAAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLKDERAVPILLRWMDSDNDLLVQASIGAMGDIGDLGVVPDLLKVLGSKDMMTRQRLAHSLGQMKDARHEPSVIDALRILSKDQSFAVRDAAKEALTDFGCMEAAKPDSMSDDERLDLEVANLLEGDEGRNVGASASEAMRRRLERSFDKEYVEDPDAFSSVAKRSNTSQDESEDDDREQNIVDPEVAKQSDAEFEDLMNDLKHGEHLDQTMAGIRLRKFDGKRVSKAVLEAGVLDASRFSERVRSLCVTLLARGGELWEVISVLMGDPDQNVRSACCDAIAEIGGGSVGVEACLKAFKTDKHWLVRVSAAIALGSIGKGFPNAEQELMDSLLPGGVEGLESPQDSVVRRHAVTALGFLGSEKCLPVIRALLNGEDSDTAIRYRIAGALRGIHCKESAALVRTLVHDGDNEVSGMAQGTLDALAQYGFS 667          
BLAST of Gcaud1824.t1 vs. uniprot
Match: A0A7S2ZJB6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB6_9RHOD)

HSP 1 Score: 177 bits (448), Expect = 5.000e-45
Identity = 179/550 (32.55%), Postives = 281/550 (51.09%), Query Frame = 0
Query:   10 LRSSGKAD-QQKGLLLVRQLPSRIALELLQLSVETSDNEFIRSTAAISIGQLSFEDDNIAMEAVRLMAALLATDE-DYSVRAAAGAAMGYATNISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVPVLHKWLSSDNDLLVQAAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPSVIDALRTLSKDQSFAVREAAEEALKVFGCGNPVKEDIRTDEELIEAEISNLIQGDESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPKPEASSDMHA------------FRQLVDDLKAGS-PLAQVMAAIQLRKFDGKLASEAALSSNSF-DPKVSTERLRAVCVGLLAKGGELEQVIRILKTDPDQNVRSACCDALLDLGGGLPAVEACIDTFQNDSHWLVRVSAAIALGTIGKENRQVEEILIQSL-YPGGV---KDMNPPQDFVIHRHVVTALGFLGSRKALTRFEELTRSHDTDDSVRYRIAAALRGIHCEESAGLLRLLIEDENESVAEMAQGSLDALSQLG 539
            L   G A+ ++K L L R L     LELL + ++ S+NE + + A + + Q + ++     + V ++   L+++E D  +R+AA   +G   +         F+AL RA  E+ EW VQ++ LA+LG+  D +A+P+L   L S+  +LVQ ++   XXXXXXXXXXXXXXXXX                       P V+  LR ++  ++     AAEEAL+       V +D  T +            GD+      S +  +R  LERSF  E  HPS+  +   P A  +  A            ++ L + LK G+    + +AAI+LR F   L  EA   + +  DP   ++R+RA  + L++    +  +  +L  DPDQNVRS+ C AL++ G    +V A I  FQND+HW+VRVSAAIALG+    +++  ++L +SL    GV   + + PP    +  H +T+LGF+G+ +A+   + ++RS +    VR R AAAL  +   +S  +L  L+ED++  V E A  S   L + G
Sbjct:   61 LMDMGTAESERKALTLSRNLSPTKELELLMIIMDKSENEIVEAAATVMLAQFARKNPESTDKCVEILCDRLSSNEYDLGIRSAAATGLGELKHEGS------FEALRRAFYEETEWAVQYAVLAALGNLGDTKALPLLIDALGSNIRMLVQRSINSLXXXXXXXXXXXXXXXXXKVDVVVEQSLAQALGSFTSY---PKVVTVLREMANSENPLTCFAAEEALQ----SAEVAQDPDTAQN----------GGDKDAP---SMNYTIRELLERSF--EQAHPSSRADRTLPLAHKEAEAEFQRMSPARQAEYKALCEQLKDGTIEDERAIAAIRLRSFPRGLKEEAVNQAGALNDP---SQRVRASVLNLVSHNPTV--LASVLLGDPDQNVRSSACSALVECGEMEASVLATIVAFQNDTHWIVRVSAAIALGSYAVNDKRAFDVLAESLCLKDGVPFAEGLKPPDALAVQCHAITSLGFVGNAEAVPLLDMMSRSSEV--KVRLRTAAALGFLADSQSLVILSRLVEDDDGEVVENAVASRARLLEEG 575          
BLAST of Gcaud1824.t1 vs. uniprot
Match: A0A1X6P4F0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4F0_PORUM)

HSP 1 Score: 65.9 bits (159), Expect = 6.330e-9
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 0
Query:   71 AVRLMAALLATDEDYSVRAAAGAAMGYATNISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVP-VLHKWLSSDNDLLVQAAVG 162
            A   + ALLAT  +  VR+AA A +GY     P A +    AL R+L+EDA+WQV FS L SLG+       P V+  +L+  N LLVQAAVG
Sbjct:    4 ATATLTALLATAPEVGVRSAAAAGLGYLPPTFPPATTDGVPALRRSLVEDADWQVHFSALVSLGTLRAGGDAPRVVASYLTDANALLVQAAVG 96          
The following BLAST results are available for this feature:
BLAST of Gcaud1824.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IJR0_9FLOR3.880e-23566.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QP05_CHOCR4.710e-14046.21Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZJB6_9RHOD5.000e-4532.55Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P4F0_PORUM6.330e-946.24Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004155PBS lyase HEAT-like repeatSMARTSM00567EZ_HEATcoord: 47..82
e-value: 72.0
score: 9.8
coord: 491..520
e-value: 2.4
score: 17.1
coord: 154..183
e-value: 8.0
score: 15.4
coord: 185..218
e-value: 5.2
score: 16.0
coord: 123..152
e-value: 5.3
score: 16.0
coord: 416..447
e-value: 23.0
score: 13.8
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 454..540
e-value: 1.3E-6
score: 30.0
coord: 299..453
e-value: 2.1E-12
score: 49.0
coord: 7..293
e-value: 1.9E-29
score: 105.0
NoneNo IPR availablePFAMPF13646HEAT_2coord: 111..196
e-value: 2.2E-13
score: 50.4
coord: 409..502
e-value: 3.8E-7
score: 30.4
NoneNo IPR availablePANTHERPTHR12697:SF5DEOXYHYPUSINE HYDROXYLASEcoord: 109..234
coord: 261..432
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 109..234
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 261..432
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 34..537

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:38653..40481 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1824.t1Gcaud1824.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 38653..40481 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1824.t1 ID=Gcaud1824.t1|Name=Gcaud1824.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=542bp
MIPVGKLQFLRSSGKADQQKGLLLVRQLPSRIALELLQLSVETSDNEFIR
STAAISIGQLSFEDDNIAMEAVRLMAALLATDEDYSVRAAAGAAMGYATN
ISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVPVLHKWLS
SDNDLLVQAAVGSLGDIGDSASIPELLKLLGSGDMMTRQRLAQALGYISE
AKGEPSVIDALRTLSKDQSFAVREAAEEALKVFGCGNPVKEDIRTDEELI
EAEISNLIQGDESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPKPEA
SSDMHAFRQLVDDLKAGSPLAQVMAAIQLRKFDGKLASEAALSSNSFDPK
VSTERLRAVCVGLLAKGGELEQVIRILKTDPDQNVRSACCDALLDLGGGL
PAVEACIDTFQNDSHWLVRVSAAIALGTIGKENRQVEEILIQSLYPGGVK
DMNPPQDFVIHRHVVTALGFLGSRKALTRFEELTRSHDTDDSVRYRIAAA
LRGIHCEESAGLLRLLIEDENESVAEMAQGSLDALSQLGFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004155PBS_lyase_HEAT
IPR011989ARM-like
IPR016024ARM-type_fold