Gcaud1821.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1821.t1
Unique NameGcaud1821.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length720
Homology
BLAST of Gcaud1821.t1 vs. uniprot
Match: A0A2V3IJT6_9FLOR (DNA polymerase I B, chloroplastic/mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJT6_9FLOR)

HSP 1 Score: 511 bits (1315), Expect = 1.600e-168
Identity = 285/700 (40.71%), Postives = 428/700 (61.14%), Query Frame = 0
Query:   14 FPTFRKAVASSALASPQEKGDTKRPHRQISIIHDVRTASRAIEALLRLPEGTPVAWSSQALPPKSSPALVTLCGYAGDPFQNGMWTFVCPSSRYEEAVWGLMRDYFADKETKVLCFDVQDLTNSLLSRGIQANGCVHDIKGMARMLGLKERGFDASVKSILSKHTLRKRETMFRGQDRLWEAPSGELRLSSEEWVFPAC-ADAHAIFHIYQRLRTNMLKKGAMSAEASNVFEAYEKFYAQVDKELCTLGKQGLFLSQDLLKDVLMRFEYEGKSEQSLFETWAQNYCDEVSNVEMTSP-MLRHLLFAPYRNIHNISEKIPAEKAFSGRRQVVAEQDGSTTGK---KNRTKKRKVLIRGAGLEPQQHTPNGVPSVSVPALQALITTLSSAEDSELQAACSAINGLLNAQTIRQAAQSFEKRLRQVADFDRYIRPRTTIDFERGRLES-LCSDVLEVLRANEDYERLVLDFENLSLCAVADLSGCVSLKKRLWLRDGVHAYLAKEFSKEISNALYDGSCVLKGEG-VTVEKAFPEKFQMAKMLDTCMGKGARVEVVRNVMKCDQARALQLIDGWFQVHPEVKAWCEQEEGRMRDRKVAETLRGRQKTLKIGKGKRSAFAVSEGMTFAIEGSAGDFIMQSVLRMVQCERINALAWKVVLADGDRIVLHGPRWSTEEAIPAVLDTLASSKDGGPILESALHQLRI 706
            F   ++  +S+A  +P +        +Q S+I D R AS+ IEALLRLP+ TPVAWS+QA    +SP + ++C YAGD F++G + ++ P S  E AVW L R+YF D+ TK +CFDV+  TN L SRGI+A+G VHD++ M RM G + +  +A  +S+L+K T  +R +MF           G++  S+++    +C ADAH IFH+Y  +   M KK  +S  A+N FEAY+KFYA+V+K+L  +GKQ L +  +L+ ++   FE EG++E+++FE WA  +C + + V +TSP MLRHLLFAPY N+H+ ++ + AE+ FS R   V    G+  GK   K +  K++++IRGAGL  Q  T NGVPSVS  ALQ +++T+  ++D+ +++AC AI  LL  Q   +  + FEK + +  D D  + P T IDFE G +ES L   V +V+RA    E +V++  N+ LCA+A++SGC  L+ R+   + +H  LA+EFS+EI  A+ +G CVL G G V V + +P+K +MA+MLD CM +G R+  V++ M CD  R  +L+  W  VHP V+ W E+       R+VAET+ G+Q+ ++ G GKR+   V+EG+ FA+  SA D ++     +   + + AL W+V L D  R+ L G   S   AI AV   L  +   G +    + QLRI
Sbjct:   46 FIALKRLCSSAAATAPVQHNQKHERPKQWSVIDDARKASKTIEALLRLPDDTPVAWSTQATSTATSPPMTSMCAYAGDSFEHGAYIYIRPQSTQESAVWALFREYFRDELTKSVCFDVRCFTNDLQSRGIRAHGRVHDVQAMIRMYGRQAKHIEACCESLLNKRTRDRRTSMF-----------GDV--SADKQSIQSCHADAHGIFHLYHDVAKRMRKKALLSNFANNTFEAYDKFYARVEKKLAEMGKQDLQVDSELMNEMKSGFEREGQAERAVFEKWAVGHCTDGTAVNLTSPTMLRHLLFAPYTNVHDKTQSVGAERTFSVR---VGGGGGAEDGKGVKKGKAVKKRIVIRGAGLGAQTWTRNGVPSVSTSALQKVVSTIEKSDDAAVESACRAICALLKWQEAGRKWERFEKSVLKAVDNDGLVLPSTRIDFESGAIESNLSRHVYDVVRAKSGNELMVVELNNVKLCALAEVSGCEVLRARVAQGEALHTLLAREFSREIQAAVLEGHCVLNGGGGVKVSQKYPQKVRMARMLDWCMTRGGRLHDVKSAMGCDDERGRRLVRAWLNVHPGVRRWVERGMKGTGGRRVAETVCGQQRAVRGGGGKRAEARVAEGVAFAVSASARDVVLCVADTLWSDDLVRALGWRVALVDARRVALCGASHSAPAAIDAVRRALWRAGGAG-VTARVMAQLRI 728          
The following BLAST results are available for this feature:
BLAST of Gcaud1821.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJT6_9FLOR1.600e-16840.71DNA polymerase I B, chloroplastic/mitochondrial n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.370coord: 460..683
e-value: 2.0E-11
score: 45.6
NoneNo IPR availableGENE3D1.10.150.20coord: 478..635
e-value: 2.0E-11
score: 45.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..368
NoneNo IPR availablePANTHERPTHR10133:SF41DNA POLYMERASE NUcoord: 97..688
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 23..258
e-value: 8.3E-9
score: 36.8
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 97..688
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 280..649
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 64..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:32740..34899 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1821.t1Gcaud1821.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 32740..34899 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1821.t1 ID=Gcaud1821.t1|Name=Gcaud1821.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=720bp
MLGLRTWTGFRYRFPTFRKAVASSALASPQEKGDTKRPHRQISIIHDVRT
ASRAIEALLRLPEGTPVAWSSQALPPKSSPALVTLCGYAGDPFQNGMWTF
VCPSSRYEEAVWGLMRDYFADKETKVLCFDVQDLTNSLLSRGIQANGCVH
DIKGMARMLGLKERGFDASVKSILSKHTLRKRETMFRGQDRLWEAPSGEL
RLSSEEWVFPACADAHAIFHIYQRLRTNMLKKGAMSAEASNVFEAYEKFY
AQVDKELCTLGKQGLFLSQDLLKDVLMRFEYEGKSEQSLFETWAQNYCDE
VSNVEMTSPMLRHLLFAPYRNIHNISEKIPAEKAFSGRRQVVAEQDGSTT
GKKNRTKKRKVLIRGAGLEPQQHTPNGVPSVSVPALQALITTLSSAEDSE
LQAACSAINGLLNAQTIRQAAQSFEKRLRQVADFDRYIRPRTTIDFERGR
LESLCSDVLEVLRANEDYERLVLDFENLSLCAVADLSGCVSLKKRLWLRD
GVHAYLAKEFSKEISNALYDGSCVLKGEGVTVEKAFPEKFQMAKMLDTCM
GKGARVEVVRNVMKCDQARALQLIDGWFQVHPEVKAWCEQEEGRMRDRKV
AETLRGRQKTLKIGKGKRSAFAVSEGMTFAIEGSAGDFIMQSVLRMVQCE
RINALAWKVVLADGDRIVLHGPRWSTEEAIPAVLDTLASSKDGGPILESA
LHQLRILHGENFRALQRMG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR002298DNA_polymerase_A
IPR043502DNA/RNA_pol_sf
IPR012337RNaseH-like_sf