Gcaud1807.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1807.t1
Unique NameGcaud1807.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Homology
The following BLAST results are available for this feature:
BLAST of Gcaud1807.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 12..35
e-value: 0.076
score: 22.1
coord: 46..69
e-value: 0.029
score: 23.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 48..69
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 14..35
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 12..40
score: 10.26301
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 46..74
score: 10.907288
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 8..89
e-value: 7.3E-13
score: 50.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..160
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 10..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2042_length_7094_cov_4.903042contigNODE_2042_length_7094_cov_4.903042:4685..5429 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1Gcaud1807.t1Gracilaria caudata M_176_S67 malemRNANODE_2042_length_7094_cov_4.903042 4685..5429 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1807.t1 ID=Gcaud1807.t1|Name=Gcaud1807.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MGSHGSSSSRLFRCPECGGSFKDAKTRSRHINSAHAGGSGTNRRKYQCGH
CCFTFEKKRSLQRHERNVHGNSNNDSVPSDPVPSNSLSQSRARSPRNDDS
GGPQVLTRSSDLSRSHSRQVSSGKMQVLPPCLEGLRSHERSIHKRNENKT
RPNQHHVDHD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf