Gcaud1782.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1782.t1
Unique NameGcaud1782.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length258
Homology
BLAST of Gcaud1782.t1 vs. uniprot
Match: A0A2V3IUG9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG9_9FLOR)

HSP 1 Score: 223 bits (567), Expect = 1.930e-69
Identity = 127/258 (49.22%), Postives = 167/258 (64.73%), Query Frame = 0
Query:    1 MEIVVATSILAHIGVLTIDRFASRFDAALHRPRDDALSPTALSSQTESETHPEPLPSSPQEPQNAEENTQQGPDGHSPPEAVDEDSVQFLQQRLNELRNQAKKLNTPDTLVQYARVTREANKVEKTLEEKKAEQGLTASTSMGVDAMTSALAEMLKPGAQAV-RQGFATQMLRMVPRIIAFIFLWYYFSWRDASARQGIVMTVDCRALRPMSFLFRKMSPPCLDNDWVCAAEASQTPVCVISYPWALILCNVVISLLF 257
            ME+V+ATS++AH GVL +DR+ ++ +A+       A        QT S + P+             E+  +     + PE   E S++FL+ RL ELRNQAK+LN PDTLVQYARVTREANKVEK + EKKA +G+T   S  VDA++ A   M+ PGA +V R+   +QMLR VPR++ F FLWYYFSWR  + RQG VMT+DC ALRP+S+LFRK    C + +WVCAA   Q P C ISY WAL+ CN+VI+ +F
Sbjct:    1 MEVVIATSLIAHFGVLAVDRYIAKLEASAVGDVPHATD----EQQTISSSQPQ-----------GNESATKNESAVTKPE---EGSIEFLEMRLKELRNQAKRLNAPDTLVQYARVTREANKVEKDVNEKKAAEGITEEPSANVDALSRAFTSMVTPGATSVVRRRINSQMLRTVPRVLGFAFLWYYFSWRSGALRQGNVMTIDCEALRPLSWLFRKQWRMCSEEEWVCAA---QRPQCAISYSWALVFCNMVIATIF 237          
BLAST of Gcaud1782.t1 vs. uniprot
Match: R7Q5M8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5M8_CHOCR)

HSP 1 Score: 135 bits (340), Expect = 2.820e-35
Identity = 96/258 (37.21%), Postives = 144/258 (55.81%), Query Frame = 0
Query:    1 MEIVVATSILAHIGVLTIDRFASRFDAALHRPRDDALSPTALSSQTESETHPEPLPSSPQEPQNAEENTQQGPDGHSPPEAVDEDSVQFLQQRLNELRNQAKKLNTPDTLVQYARVTREANKVEKTLEEKKAEQGLTASTSMGVDAMTSALAEMLKPGAQAVRQGFATQM-LRMVPRIIAFIFLWYYFSWRDASARQGIVMTVDCRALRPMSFLFRKMSPPCLDNDWVCAAEASQTPVCVISYPWALILCNVVISLLF 257
            ME+V+  S L+++  L ID +ASR    L +P  +  + T  +S ++     E  P+S   PQ A+   +Q P+G          S+  L++++  LR +AK++N PDT VQYAR+TREANKVEK L EKKA +      ++  D M   L++ + P AQ+  +  A  M L+ + R + F+ LW+YFS           + +DCRA RP+SF+F K  P C D+ W+CAA   Q P C +SY   L+L N V  ++F
Sbjct:    1 MEVVLLGSALSNLCALLIDAYASRAQRPLIQPPAEPDTTTQRASNSKDRV--EAAPASDANPQEAD--AEQFPEG----------SIPALEKKVKHLRAEAKRVNAPDTFVQYARLTREANKVEKELTEKKALEPSDTHGTVLPDVMAM-LSKAVTPQAQSSMKRRAQFMVLKAIVRALPFLLLWWYFSPFGYDRGPADALVIDCRAFRPLSFIFSKREPSCGDDHWMCAA---QPPQCAVSYWMVLVLANTVFPMIF 240          
The following BLAST results are available for this feature:
BLAST of Gcaud1782.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUG9_9FLOR1.930e-6949.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q5M8_CHOCR2.820e-3537.21Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 80..107
NoneNo IPR availableCOILSCoilCoilcoord: 113..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 170..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 188..257
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_338_length_29361_cov_4.567031contigNODE_338_length_29361_cov_4.567031:20047..20922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1782.t1Gcaud1782.t1Gracilaria caudata M_176_S67 malemRNANODE_338_length_29361_cov_4.567031 20047..20922 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1782.t1 ID=Gcaud1782.t1|Name=Gcaud1782.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MEIVVATSILAHIGVLTIDRFASRFDAALHRPRDDALSPTALSSQTESET
HPEPLPSSPQEPQNAEENTQQGPDGHSPPEAVDEDSVQFLQQRLNELRNQ
AKKLNTPDTLVQYARVTREANKVEKTLEEKKAEQGLTASTSMGVDAMTSA
LAEMLKPGAQAVRQGFATQMLRMVPRIIAFIFLWYYFSWRDASARQGIVM
TVDCRALRPMSFLFRKMSPPCLDNDWVCAAEASQTPVCVISYPWALILCN
VVISLLF*
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