Gcaud1780.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1780.t1
Unique NameGcaud1780.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length418
Homology
BLAST of Gcaud1780.t1 vs. uniprot
Match: A0A2V3IX96_9FLOR (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX96_9FLOR)

HSP 1 Score: 479 bits (1233), Expect = 2.150e-165
Identity = 271/421 (64.37%), Postives = 322/421 (76.48%), Query Frame = 0
Query:    1 MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNVAPPQ-KPVPPVVRERPPPRQNAWTKPIQSQQVRSAAQQPSXXXXXXXARGHHRRQNSFPASFGSKLDRFDSDPQRQQPRAPNAPTTTLYVANLPYETHEQAIGDFFSVNTIQVFGIRLMRHSDTGNIKAALVTIAADHVSKALATDGKLFGGRTIHVKVDGTDGKRGGRERDRGERGHNRTPSFGS-FGSRVPA-NGNQRSGTAWSERGPGHSFDSQLSRRTSDGSREDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPTPALQVDQGSTDAPKAPQSAMPAPGRQENDSLSHQKGSAAPRRVNSAGGDRFN-RNDRNADKFDRVERRDRGGKVFDDSASKRTNLKETSTTRPSSQPASKKEDDSKRPVLLNTFAALELNDSDA 417
            MDDDWAS+GEEEGLGDLSDIPD+D+P Q +  +  P  +P  PVV     PRQNAWTKP QSQQVRSA Q P+        R  HRRQNSFPASFGS L+R      R QPR+   PTTTLYV NLPY+THEQAIGDFF+ +++ V GIRL++H DTGNI+AALVT+ ADHV KALA DG++FGGRTI+VK+DGTDGKRG R    GER  +R PSFGS FG+R P  NGN RS ++W +RGPGHS DSQL+RR SD +R+DRRSR    +KDP+IP GPPPAGRKKLQLMPRTKP P LQVDQ +    K PQSAMPAPGRQ+++  S  +    PRRVNS GG+R + R DR++D+FDRV+RRDRG ++ DDS +K TN KET+T+RPSSQP +KKEDDSKRPVL NTFAAL++ D DA
Sbjct:    1 MDDDWASEGEEEGLGDLSDIPDVDLPVQIKTPLPEPTPQPPAPVV-----PRQNAWTKPNQSQQVRSAVQSPAQHQQQPQGRALHRRQNSFPASFGSNLERPSQPAPRHQPRSHTGPTTTLYVTNLPYQTHEQAIGDFFTASSVHVVGIRLVKHPDTGNIRAALVTVVADHVPKALAVDGRMFGGRTIYVKIDGTDGKRGAR----GERSQSRNPSFGSSFGTRAPPLNGNARS-SSWHDRGPGHSIDSQLTRRASD-NRDDRRSRLAPLAKDPSIPVGPPPAGRKKLQLMPRTKPPPELQVDQRAISQQKPPQSAMPAPGRQDSEKFSQNRAGPPPRRVNSYGGERSSTRGDRSSDRFDRVDRRDRGPRM-DDSRNKWTNSKETATSRPSSQPTAKKEDDSKRPVLQNTFAALDIKDPDA 409          
BLAST of Gcaud1780.t1 vs. uniprot
Match: R7Q424_CHOCR (Possible translation initiation factor eIF4, subunit H n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q424_CHOCR)

HSP 1 Score: 152 bits (385), Expect = 7.030e-39
Identity = 138/346 (39.88%), Postives = 181/346 (52.31%), Query Frame = 0
Query:  107 RQQPRAP-NAP---TTTLYVANLPYETHEQAIGDFFSVNTIQVFGIRLMRHSDTGNIKAALVTIAAD-HVSKALATDGKLFGGRTIHVKVDGTDGKRGGRERDRGERGHNRTPSFGSFGSRVPA------NGNQRSGT---AWSERGPGHSFDSQLSRRTSDGSREDRRSRGGS--------HSKDPTIPTGPPPAGRKKLQLMPRTKPTPALQVDQGSTDA--PKAPQSAMPAPGRQENDSLSHQ---KGSAAPRRVNSAGGDRFNRNDRNADKFD-RVER----RDRGGKVFDDSASKRTNLKETSTTRPS--SQPASKKEDDSK-RPVLLNTFAALELNDSDA 417
            R+QP +P +AP   TTTLYV +LP++T E  I   F    +    + L RH+DTGNIKAALVTI  + ++S  LA DG    GR +HVKVDG     GG +R+R   G      FGS   R+ A      +G QR  T    W++R  G  FD           R    SRG            +DPTIPTGPPPAGRKKL L PRTKP P L+VD  + D   P  P S      R EN   S     + ++ PR V +   +  + N +     D +VE+    +D   K       + ++ KE +  + S  +Q ++KK+DDSK RPVLLNTFAALE+ND+DA
Sbjct:   28 RRQPSSPASAPAGSTTTLYVFHLPFDTSEVEIASLFRHCAVTPADVHLTRHNDTGNIKAALVTIRGEENLSAGLAVDGAKLSGRPVHVKVDGDRRGSGGGQRERSGYG------FGSKDRRMEAMPSSSPHGGQRDSTWSSGWTDRSGGGGFDQSSRGERGVEGRSAGASRGAGVTPRGASEQREDPTIPTGPPPAGRKKLVLKPRTKPPPVLEVDTRAIDGVKPSVPSSVSQPRHRFENSDPSKNLAMRQNSGPR-VTAPLSEGADPNPKEVTPADPKVEKWTTPKDATAKT---QGERWSSAKEGAPQKASGTAQGSNKKDDDSKKRPVLLNTFAALEVNDADA 363          
The following BLAST results are available for this feature:
BLAST of Gcaud1780.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX96_9FLOR2.150e-16564.37RRM domain-containing protein n=1 Tax=Gracilariops... [more]
R7Q424_CHOCR7.030e-3939.88Possible translation initiation factor eIF4, subun... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 119..190
e-value: 0.0011
score: 28.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 118..194
score: 9.200421
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 95..271
e-value: 5.7E-13
score: 51.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..94
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 88..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_338_length_29361_cov_4.567031contigNODE_338_length_29361_cov_4.567031:13329..14582 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1780.t1Gcaud1780.t1Gracilaria caudata M_176_S67 malemRNANODE_338_length_29361_cov_4.567031 13329..14582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1780.t1 ID=Gcaud1780.t1|Name=Gcaud1780.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNVAPPQKPVPPVVRERPPP
RQNAWTKPIQSQQVRSAAQQPSQPSQPSQARGHHRRQNSFPASFGSKLDR
FDSDPQRQQPRAPNAPTTTLYVANLPYETHEQAIGDFFSVNTIQVFGIRL
MRHSDTGNIKAALVTIAADHVSKALATDGKLFGGRTIHVKVDGTDGKRGG
RERDRGERGHNRTPSFGSFGSRVPANGNQRSGTAWSERGPGHSFDSQLSR
RTSDGSREDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPTPALQVD
QGSTDAPKAPQSAMPAPGRQENDSLSHQKGSAAPRRVNSAGGDRFNRNDR
NADKFDRVERRDRGGKVFDDSASKRTNLKETSTTRPSSQPASKKEDDSKR
PVLLNTFAALELNDSDA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf