Gcaud1775.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1775.t1
Unique NameGcaud1775.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length320
Homology
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BLAST of Gcaud1775.t1 vs. uniprot
Match: A0A2V3IS53_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS53_9FLOR)

HSP 1 Score: 161 bits (408), Expect = 1.010e-44
Identity = 106/235 (45.11%), Postives = 137/235 (58.30%), Query Frame = 0 
Query:  122 MKIGFLSLVFYIAAIVSDGTIFSPHRSSIAGNVASVLILIALSLLL-----------------------------------PAIAIILLNLVIFCVTFLWFFVEQTFSVLVAFLHFLVGLSLFNLQHTYLCLRQIYFNGSETEYEQHLVVNSERFLQQVRNNWFLNRVPRCFLENADLAVRTVLSEHLHDQVEFIPYMDMDSFGSEEDEE-AITTRTDPDV--NETTALLERASG 318
            M I F++LVFYIAAI++DGT F+PHR +IA   A+ LI+IALS LL                                   P IAII LN  +F V F+ F ++   + L+   HF  GL+L++ QHTYLCLRQIY N SE +Y+Q L+  S++ L+  R+NW L+RVPR  L++AD AVRTVL EHLHD VEF P+  M S  S  D+E A + +  P     ETTALL R  G
Sbjct:    1 MNIAFVTLVFYIAAILADGTFFTPHRPTIATTTATALIMIALSSLLYITIVPARMQFVLFGAGILHSAAFLLIVLTCAFVLPGIAIITLNFTVFLVAFVGFLLDLMLTFLIGVFHFFRGLALYHAQHTYLCLRQIYSNLSEDDYDQQLLAYSDKLLRHARSNWNLHRVPRSLLDSADHAVRTVLPEHLHDDVEFAPFTTMGSLDSNHDQEDANSEQEQPQTLPTETTALLGRTPG 235
The following BLAST results are available for this feature:
BLAST of Gcaud1775.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IS53_9FLOR1.010e-4445.11Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..319
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..156
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..187
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..117
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 188..192
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 212..319
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..137
NoneNo IPR availableTMHMMTMhelixcoord: 124..143
NoneNo IPR availableTMHMMTMhelixcoord: 193..215
NoneNo IPR availableTMHMMTMhelixcoord: 158..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:15763..16827 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1775.t1Gcaud1775.t1Gracilaria caudata M_176_S67 malemRNANODE_837_length_17206_cov_4.413380 15763..16827 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1775.t1 ID=Gcaud1775.t1|Name=Gcaud1775.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=320bp
LFVPSTAARKRVVNAAICKVVHVAYDSSACHGARRDLVTRSTPCLWRVSV
VSDVIQERHPLVMAQQFPLSSGDVRLLTRLDGCNSTEQCDDEQVDCTYGI
EDPSDAFWWREYNQDIKFVVMMKIGFLSLVFYIAAIVSDGTIFSPHRSSI
AGNVASVLILIALSLLLPAIAIILLNLVIFCVTFLWFFVEQTFSVLVAFL
HFLVGLSLFNLQHTYLCLRQIYFNGSETEYEQHLVVNSERFLQQVRNNWF
LNRVPRCFLENADLAVRTVLSEHLHDQVEFIPYMDMDSFGSEEDEEAITT
RTDPDVNETTALLERASGA*
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